Wall clock time and date at job start Fri Apr 10 2020 17:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47034 * 299.99866 * 3 2 1 6 6 H 1.48504 * 109.47092 * 59.99317 * 3 2 1 7 7 C 1.38798 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00276 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99998 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47262 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99643 * 359.97438 * 11 10 9 13 13 O 1.34247 * 120.00043 * 179.97438 * 11 10 9 14 14 C 1.35942 * 117.00210 * 185.77044 * 13 11 10 15 15 C 1.38758 * 119.98960 * 68.99655 * 14 13 11 16 16 C 1.38048 * 120.01169 * 180.25703 * 15 14 13 17 17 C 1.38837 * 119.98758 * 359.46916 * 16 15 14 18 18 N 1.40322 * 120.00775 * 180.23282 * 17 16 15 19 19 C 1.35047 * 127.38654 * 0.02562 * 18 17 16 20 20 N 1.30744 * 107.27430 * 179.87504 * 19 18 17 21 21 N 1.28422 * 110.64482 * 0.40389 * 20 19 18 22 22 N 1.28948 * 110.19983 * 359.74724 * 21 20 19 23 23 C 1.38833 * 119.97988 * 0.52918 * 17 16 15 24 24 C 1.38045 * 119.99453 * 359.72630 * 23 17 16 25 25 H 0.96995 * 120.00052 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47026 * 59.99817 * 10 9 7 27 27 H 1.09001 * 109.46797 * 299.99984 * 10 9 7 28 28 H 1.08002 * 119.99356 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.00599 * 179.70487 * 16 15 14 30 30 H 1.07998 * 126.36307 * 359.97438 * 19 18 17 31 31 H 1.08010 * 119.99922 * 179.74629 * 23 17 16 32 32 H 1.07993 * 119.99858 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3027 -0.0001 12 8 0.7959 -5.5015 0.0000 13 8 2.8411 -6.3390 -0.0007 14 6 2.3033 -7.5815 -0.1231 15 6 1.7216 -7.9705 -1.3212 16 6 1.1705 -9.2303 -1.4443 17 6 1.2082 -10.1119 -0.3724 18 7 0.6525 -11.3942 -0.4986 19 6 0.0492 -11.9232 -1.5849 20 7 -0.3178 -13.1384 -1.2719 21 7 0.0049 -13.4107 -0.0591 22 7 0.5992 -12.4016 0.4807 23 6 1.7903 -9.7222 0.8262 24 6 2.3364 -8.4604 0.9501 25 1 -0.4850 0.8400 -0.0004 26 1 3.1247 -3.7313 0.8905 27 1 3.1246 -3.7313 -0.8895 28 1 1.6959 -7.2861 -2.1563 29 1 0.7136 -9.5313 -2.3754 30 1 -0.1007 -11.4339 -2.5360 31 1 1.8162 -10.4064 1.6616 32 1 2.7889 -8.1571 1.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032767942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:31 Heat of formation + Delta-G solvation = 80.781969 kcal Electronic energy + Delta-G solvation = -20635.641559 eV Core-core repulsion = 17112.571376 eV Total energy + Delta-G solvation = -3523.070183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 306.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.59470 -41.43077 -39.36003 -36.99505 -35.04661 -32.79337 -32.59519 -31.66157 -30.64371 -29.30747 -25.74555 -25.39285 -24.53068 -23.06347 -22.32933 -21.22845 -19.16455 -18.38319 -18.00148 -17.01097 -16.88702 -16.63844 -16.48856 -15.14241 -15.00657 -14.94455 -14.59986 -14.13678 -13.98240 -13.89982 -13.70348 -13.14602 -12.91015 -12.77843 -12.58220 -12.06994 -11.76735 -11.45139 -11.20794 -11.17784 -11.06178 -10.91563 -10.91163 -10.42658 -10.01948 -9.66300 -9.22949 -8.92542 -8.51529 -6.74942 -6.38489 -4.12881 -0.18098 0.70701 1.05512 1.30883 1.85517 2.25894 2.37565 3.05795 3.12608 3.20042 3.23867 3.37673 3.59249 3.77538 4.03518 4.18774 4.36208 4.38861 4.52413 4.76810 4.91785 4.96379 4.98047 5.05261 5.25201 5.35562 5.52367 5.55850 5.64248 5.79703 5.84753 5.88000 6.13296 6.50327 7.45142 7.86280 7.97601 8.19453 9.07449 10.68988 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.048942 B = 0.002316 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.965297 B =12088.731163 C =12305.627345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.923 3.077 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.078 0.922 9 S -0.056 6.056 10 C -0.128 4.128 11 C 0.478 3.522 12 O -0.465 6.465 13 O -0.297 6.297 14 C 0.111 3.889 15 C -0.101 4.101 16 C -0.100 4.100 17 C 0.118 3.882 18 N -0.322 5.322 19 C 0.227 3.773 20 N -0.331 5.331 21 N -0.036 5.036 22 N -0.076 5.076 23 C -0.084 4.084 24 C -0.098 4.098 25 H 0.270 0.730 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.241 0.759 31 H 0.150 0.850 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -17.914 -3.292 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.749 3.251 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.685 4.685 8 H 0.096 0.904 9 S 0.171 5.829 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.347 6.347 13 O -0.214 6.214 14 C 0.068 3.932 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.026 3.974 18 N -0.112 5.112 19 C -0.070 4.070 20 N -0.180 5.180 21 N -0.031 5.031 22 N -0.062 5.062 23 C -0.104 4.104 24 C -0.117 4.117 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.256 0.744 31 H 0.167 0.833 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.592 -19.262 -2.411 19.742 hybrid contribution 1.975 2.147 -0.539 2.966 sum 5.566 -17.116 -2.950 18.238 Atomic orbital electron populations 1.70009 1.06011 1.27719 1.46373 1.25018 0.95089 0.99209 0.94183 0.86048 0.79594 0.81445 0.78028 1.19450 1.20447 1.20444 1.22864 0.95073 0.90910 1.59699 0.90373 1.85485 1.03793 0.96697 1.96942 1.23360 1.07483 0.89689 1.06991 1.23863 0.85228 0.86529 0.72406 1.90727 1.16443 1.84827 1.42653 1.84702 1.40086 1.12665 1.83965 1.18744 0.96474 0.84605 0.93394 1.21249 0.96827 0.96073 0.97901 1.20667 1.01007 0.92806 0.97635 1.17577 1.01600 0.81079 0.97120 1.49074 1.39520 1.12335 1.10302 1.27475 0.92870 0.91428 0.95207 1.74505 1.22888 1.12799 1.07780 1.78090 1.06763 1.17101 1.01149 1.82676 1.19699 0.92365 1.11416 1.20796 0.96904 0.96527 0.96174 1.21092 0.99288 0.92831 0.98488 0.91994 0.87396 0.87392 0.83524 0.83944 0.74357 0.83277 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.73 13.22 55.49 0.73 -24.00 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.27 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.25 9.50 30.94 0.29 -13.95 16 8 H 0.08 1.95 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.37 20.58 -107.50 -2.21 -3.59 16 10 C -0.13 -2.30 6.27 36.00 0.23 -2.07 16 11 C 0.48 7.97 7.75 36.00 0.28 8.25 16 12 O -0.46 -9.05 15.27 -18.75 -0.29 -9.34 16 13 O -0.30 -4.04 10.04 -23.63 -0.24 -4.28 16 14 C 0.11 1.29 5.27 -39.20 -0.21 1.09 16 15 C -0.10 -1.00 9.32 -39.46 -0.37 -1.37 16 16 C -0.10 -0.77 9.48 -39.43 -0.37 -1.14 16 17 C 0.12 1.06 6.71 -83.53 -0.56 0.50 16 18 N -0.32 -3.06 3.86 -11.72 -0.05 -3.10 16 19 C 0.23 1.73 12.16 -90.17 -1.10 0.63 16 20 N -0.33 -3.61 12.15 29.64 0.36 -3.25 16 21 N -0.04 -0.45 13.39 60.35 0.81 0.35 16 22 N -0.08 -0.90 13.33 60.35 0.80 -0.10 16 23 C -0.08 -0.77 9.69 -39.43 -0.38 -1.15 16 24 C -0.10 -0.96 9.98 -39.46 -0.39 -1.36 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 27 H 0.11 1.76 8.14 -51.92 -0.42 1.33 16 28 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.14 0.57 6.88 -52.49 -0.36 0.21 16 30 H 0.24 0.51 7.19 -52.49 -0.38 0.13 16 31 H 0.15 1.21 7.77 -52.48 -0.41 0.81 16 32 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -33.28 314.67 -5.41 -38.70 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -2.38 Total: -2.73 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.68 Total: -8.66 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 2.66 Total: -30.09 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.52 Total: -13.62 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.28 -5.41 -38.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032767942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.480 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds