Wall clock time and date at job start Fri Apr 10 2020 17:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47034 * 299.99866 * 3 2 1 6 6 H 1.48504 * 109.47092 * 59.99317 * 3 2 1 7 7 C 1.38798 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00276 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99998 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47262 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99643 * 359.97438 * 11 10 9 13 13 O 1.34247 * 120.00043 * 179.97438 * 11 10 9 14 14 C 1.35942 * 117.00210 * 185.77044 * 13 11 10 15 15 C 1.38758 * 119.98960 * 68.99655 * 14 13 11 16 16 C 1.38048 * 120.01169 * 180.25703 * 15 14 13 17 17 C 1.38837 * 119.98758 * 359.46916 * 16 15 14 18 18 N 1.40322 * 120.00775 * 180.23282 * 17 16 15 19 19 C 1.35047 * 127.38654 * 0.02562 * 18 17 16 20 20 N 1.30744 * 107.27430 * 179.87504 * 19 18 17 21 21 N 1.28422 * 110.64482 * 0.40389 * 20 19 18 22 22 N 1.28948 * 110.19983 * 359.74724 * 21 20 19 23 23 C 1.38833 * 119.97988 * 0.52918 * 17 16 15 24 24 C 1.38045 * 119.99453 * 359.72630 * 23 17 16 25 25 H 0.96995 * 120.00052 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47026 * 59.99817 * 10 9 7 27 27 H 1.09001 * 109.46797 * 299.99984 * 10 9 7 28 28 H 1.08002 * 119.99356 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.00599 * 179.70487 * 16 15 14 30 30 H 1.07998 * 126.36307 * 359.97438 * 19 18 17 31 31 H 1.08010 * 119.99922 * 179.74629 * 23 17 16 32 32 H 1.07993 * 119.99858 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3027 -0.0001 12 8 0.7959 -5.5015 0.0000 13 8 2.8411 -6.3390 -0.0007 14 6 2.3033 -7.5815 -0.1231 15 6 1.7216 -7.9705 -1.3212 16 6 1.1705 -9.2303 -1.4443 17 6 1.2082 -10.1119 -0.3724 18 7 0.6525 -11.3942 -0.4986 19 6 0.0492 -11.9232 -1.5849 20 7 -0.3178 -13.1384 -1.2719 21 7 0.0049 -13.4107 -0.0591 22 7 0.5992 -12.4016 0.4807 23 6 1.7903 -9.7222 0.8262 24 6 2.3364 -8.4604 0.9501 25 1 -0.4850 0.8400 -0.0004 26 1 3.1247 -3.7313 0.8905 27 1 3.1246 -3.7313 -0.8895 28 1 1.6959 -7.2861 -2.1563 29 1 0.7136 -9.5313 -2.3754 30 1 -0.1007 -11.4339 -2.5360 31 1 1.8162 -10.4064 1.6616 32 1 2.7889 -8.1571 1.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032767942.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:30 Heat of formation + Delta-G solvation = 61.052828 kcal Electronic energy + Delta-G solvation = -20636.497079 eV Core-core repulsion = 17112.571376 eV Total energy + Delta-G solvation = -3523.925703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 306.057 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.35289 -42.50756 -40.24164 -38.17325 -35.86192 -34.60720 -33.54981 -32.37616 -31.84652 -30.32795 -27.72005 -26.26469 -25.26375 -24.03300 -23.06048 -22.24046 -19.99485 -19.86071 -19.36990 -17.95091 -17.86010 -17.74255 -17.23364 -16.89189 -16.31754 -16.18316 -15.62949 -15.18427 -14.83634 -14.75346 -14.56504 -14.46212 -14.13990 -14.03692 -13.43341 -13.19558 -13.13964 -12.92196 -12.68352 -12.54095 -12.21851 -11.98283 -11.77301 -11.75807 -11.68946 -11.17484 -10.38372 -10.35630 -9.72783 -8.73370 -8.37841 -6.16967 -0.93300 0.01241 0.23876 0.61118 0.96329 1.01591 1.14738 1.42520 1.42763 1.56691 1.82022 2.23163 2.43881 2.93668 2.98063 3.23103 3.24826 3.54229 3.58474 3.68474 3.77768 3.98500 4.14675 4.16556 4.27161 4.34951 4.44286 4.62064 4.70878 4.91212 5.03660 5.11081 5.26562 5.42651 5.58485 6.18737 6.63962 7.05029 7.20508 8.71290 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.048942 B = 0.002316 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.965297 B =12088.731163 C =12305.627345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.088 0.912 9 S -0.134 6.134 10 C -0.108 4.108 11 C 0.489 3.511 12 O -0.498 6.498 13 O -0.286 6.286 14 C 0.073 3.927 15 C -0.107 4.107 16 C -0.085 4.085 17 C 0.118 3.882 18 N -0.326 5.326 19 C 0.246 3.754 20 N -0.357 5.357 21 N -0.059 5.059 22 N -0.099 5.099 23 C -0.089 4.089 24 C -0.098 4.098 25 H 0.272 0.728 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.153 0.847 29 H 0.187 0.813 30 H 0.294 0.706 31 H 0.155 0.845 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -18.158 -4.490 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.693 4.693 8 H 0.106 0.894 9 S 0.093 5.907 10 C -0.256 4.256 11 C 0.332 3.668 12 O -0.383 6.383 13 O -0.201 6.201 14 C 0.031 3.969 15 C -0.126 4.126 16 C -0.106 4.106 17 C 0.026 3.974 18 N -0.116 5.116 19 C -0.049 4.049 20 N -0.206 5.206 21 N -0.054 5.054 22 N -0.084 5.084 23 C -0.109 4.109 24 C -0.117 4.117 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.171 0.829 29 H 0.204 0.796 30 H 0.309 0.691 31 H 0.173 0.827 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.908 -19.535 -3.607 20.462 hybrid contribution 1.599 2.023 -0.202 2.586 sum 6.507 -17.512 -3.809 19.066 Atomic orbital electron populations 1.70157 1.07883 1.28712 1.47839 1.26082 0.95943 1.03223 0.93641 0.84916 0.78727 0.76409 0.77997 1.17938 1.20006 1.20158 1.23227 0.95586 0.91477 1.59048 0.89381 1.85565 1.08874 0.99033 1.97193 1.23128 1.04544 0.88995 1.08925 1.23443 0.84806 0.86850 0.71672 1.90716 1.17816 1.85382 1.44339 1.84661 1.39027 1.13038 1.83413 1.19111 0.98978 0.83751 0.95034 1.21436 0.96583 0.97147 0.97444 1.21029 0.99495 0.91287 0.98761 1.17761 1.01136 0.81031 0.97464 1.49101 1.39863 1.12144 1.10519 1.28509 0.90158 0.90262 0.95967 1.74447 1.24036 1.14689 1.07437 1.78083 1.07439 1.17771 1.02091 1.82630 1.20331 0.92919 1.12535 1.20911 0.96859 0.96353 0.96820 1.21198 0.99116 0.92801 0.98563 0.91889 0.85581 0.85220 0.82887 0.79590 0.69081 0.82734 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.81 13.22 21.65 0.29 -52.52 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 1.00 41.18 29.55 68.60 2.03 43.21 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -28.86 9.50 67.95 0.65 -28.22 16 8 H 0.09 4.31 7.80 -2.91 -0.02 4.28 16 9 S -0.13 -6.71 20.58 -56.49 -1.16 -7.88 16 10 C -0.11 -3.78 6.27 71.24 0.45 -3.33 16 11 C 0.49 15.94 7.75 71.24 0.55 16.50 16 12 O -0.50 -19.39 15.27 21.96 0.34 -19.05 16 13 O -0.29 -7.41 10.04 4.51 0.05 -7.36 16 14 C 0.07 1.62 5.27 22.52 0.12 1.74 16 15 C -0.11 -1.88 9.32 22.35 0.21 -1.67 16 16 C -0.09 -1.02 9.48 22.37 0.21 -0.80 16 17 C 0.12 1.83 6.71 38.07 0.26 2.08 16 18 N -0.33 -5.43 3.86 -191.00 -0.74 -6.17 16 19 C 0.25 2.95 12.16 180.19 2.19 5.14 16 20 N -0.36 -7.18 12.15 -60.14 -0.73 -7.91 16 21 N -0.06 -1.44 13.39 37.02 0.50 -0.95 16 22 N -0.10 -2.25 13.33 37.02 0.49 -1.75 16 23 C -0.09 -1.51 9.69 22.37 0.22 -1.29 16 24 C -0.10 -1.82 9.98 22.35 0.22 -1.59 16 25 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.13 3.98 8.14 -2.40 -0.02 3.96 16 27 H 0.13 3.99 8.14 -2.39 -0.02 3.97 16 28 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.19 0.46 6.88 -2.91 -0.02 0.44 16 30 H 0.29 -0.37 7.19 -2.91 -0.02 -0.39 16 31 H 0.16 2.40 7.77 -2.91 -0.02 2.37 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.79 314.67 7.77 -67.02 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.18 Total: 3.48 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.53 Total: -10.12 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -0.19 Total: -69.30 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: 0.38 Total: -26.41 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -1.16 Total: -7.88 kcal Total: -74.79 7.77 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032767942.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.072 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds