Wall clock time and date at job start Fri Apr 10 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 S 1.65598 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.42101 * 106.40398 * 178.53845 * 10 9 7 12 12 O 1.42098 * 106.40011 * 311.46286 * 10 9 7 13 13 C 1.76204 * 107.21832 * 65.00007 * 10 9 7 14 14 C 1.38235 * 120.41158 * 269.72347 * 13 10 9 15 15 N 1.31854 * 120.78121 * 179.74915 * 14 13 10 16 16 C 1.31877 * 121.73779 * 0.54230 * 15 14 13 17 17 C 1.38277 * 120.74969 * 359.72285 * 16 15 14 18 18 Br 1.89099 * 120.42829 * 179.97438 * 17 16 15 19 19 C 1.38606 * 120.41340 * 89.99833 * 13 10 9 20 20 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 22 22 H 1.07996 * 119.60879 * 0.02562 * 14 13 10 23 23 H 1.08006 * 119.62443 * 179.75173 * 16 15 14 24 24 H 1.07995 * 120.79716 * 359.95927 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 16 2.1534 -3.8223 0.0047 11 8 1.1740 -4.8510 0.0455 12 8 3.1318 -3.7207 -1.0208 13 6 3.0360 -3.9150 1.5269 14 6 4.3225 -3.4179 1.6213 15 7 4.9878 -3.4791 2.7580 16 6 4.4640 -4.0211 3.8401 17 6 3.1840 -4.5439 3.8203 18 35 2.4421 -5.3198 5.3770 19 6 2.4512 -4.4924 2.6431 20 1 -0.4849 0.8401 0.0004 21 1 0.3555 -2.3880 0.0092 22 1 4.7864 -2.9702 0.7549 23 1 5.0412 -4.0567 4.7523 24 1 1.4491 -4.8923 2.5977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044243145.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:51 Heat of formation + Delta-G solvation = -36.284699 kcal Electronic energy + Delta-G solvation = -15272.235566 eV Core-core repulsion = 12359.102610 eV Total energy + Delta-G solvation = -2913.132956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 305.946 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94785 -36.20897 -34.83220 -34.82782 -33.06193 -31.97682 -31.16363 -29.47920 -24.72771 -23.90375 -23.21428 -18.65437 -18.34952 -17.51114 -16.77807 -16.51244 -15.99357 -14.74297 -14.44449 -14.14616 -14.05651 -13.58224 -13.14667 -12.50334 -12.12040 -11.44426 -11.34355 -11.24174 -11.14834 -11.01652 -10.76278 -10.69779 -10.53319 -10.35270 -10.18011 -9.87934 -9.38979 -8.96653 -8.46839 -6.69395 -4.07782 0.73151 1.10560 1.37706 1.49826 3.10436 3.13104 3.15658 3.56606 3.92041 4.28859 4.45461 4.64016 4.74858 4.91345 5.02057 5.12562 5.17614 5.72624 5.86305 6.07724 6.49898 6.82489 7.26727 7.79794 8.45232 8.56470 9.00830 10.44854 Molecular weight = 305.95amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.005509 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.951211 B = 5081.335843 C = 5470.637660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.033 3.967 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.107 0.893 9 N -0.935 5.935 10 S 2.592 3.408 11 O -0.999 6.999 12 O -0.965 6.965 13 C -0.704 4.704 14 C 0.204 3.796 15 N -0.492 5.492 16 C 0.161 3.839 17 C -0.172 4.172 18 Br -0.041 7.041 19 C 0.046 3.954 20 H 0.279 0.721 21 H 0.412 0.588 22 H 0.177 0.823 23 H 0.164 0.836 24 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -5.835 9.774 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.177 4.177 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.410 4.410 8 H 0.125 0.875 9 N -0.685 5.685 10 S 2.681 3.319 11 O -0.987 6.987 12 O -0.955 6.955 13 C -0.784 4.784 14 C 0.047 3.953 15 N -0.201 5.201 16 C 0.001 3.999 17 C -0.254 4.254 18 Br 0.043 6.957 19 C 0.018 3.982 20 H 0.090 0.910 21 H 0.247 0.753 22 H 0.194 0.806 23 H 0.181 0.819 24 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.937 -6.522 9.816 12.777 hybrid contribution -0.559 0.903 0.591 1.215 sum 4.378 -5.619 10.407 12.611 Atomic orbital electron populations 1.69682 1.06164 1.29062 1.45415 1.25363 0.95732 0.99882 0.96715 0.85995 0.79170 0.80239 0.79522 1.19126 1.20469 1.19528 1.19419 0.92445 0.83018 1.46098 0.87546 1.52078 1.17206 1.19580 1.79684 1.08079 0.73202 0.74062 0.76594 1.93411 1.59537 1.58017 1.87785 1.93474 1.61323 1.86934 1.53769 1.33470 1.09486 1.09458 1.25939 1.22740 0.89062 0.88281 0.95251 1.67920 1.36776 1.15876 0.99510 1.22964 0.90398 0.89334 0.97158 1.22960 0.99195 1.08775 0.94507 1.96687 1.84408 1.81745 1.32819 1.21269 0.98984 0.88819 0.89170 0.91047 0.75254 0.80640 0.81930 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.47 13.06 55.49 0.72 -20.74 14 2 C 0.03 0.79 5.50 -17.43 -0.10 0.69 14 3 Si 0.93 18.52 29.55 -169.99 -5.02 13.50 14 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 14 6 H -0.27 -5.34 7.11 56.52 0.40 -4.93 14 7 C -0.27 -6.27 9.63 -15.06 -0.15 -6.41 14 8 H 0.11 2.34 7.82 -52.49 -0.41 1.93 14 9 N -0.93 -21.04 5.75 31.50 0.18 -20.86 14 10 S 2.59 54.12 5.71 -107.50 -0.61 53.51 14 11 O -1.00 -22.32 17.36 -57.17 -0.99 -23.31 14 12 O -0.97 -22.01 17.01 -57.17 -0.97 -22.98 14 13 C -0.70 -13.12 5.91 -39.45 -0.23 -13.35 14 14 C 0.20 3.64 10.69 -17.54 -0.19 3.45 14 15 N -0.49 -8.28 10.36 -13.23 -0.14 -8.41 14 16 C 0.16 2.38 10.95 -17.52 -0.19 2.19 14 17 C -0.17 -2.63 6.25 -39.37 -0.25 -2.88 14 18 Br -0.04 -0.51 33.74 -68.01 -2.29 -2.81 14 19 C 0.05 0.79 9.41 -39.25 -0.37 0.42 14 20 H 0.28 6.55 8.31 -40.82 -0.34 6.21 14 21 H 0.41 9.41 8.02 -34.47 -0.28 9.13 14 22 H 0.18 2.91 7.62 -52.49 -0.40 2.51 14 23 H 0.16 1.86 8.06 -52.48 -0.42 1.44 14 24 H 0.15 2.49 7.71 -52.49 -0.40 2.08 14 LS Contribution 259.74 15.07 3.91 3.91 Total: -1.00 -28.02 259.74 -7.73 -35.76 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -1.05 Total: 8.34 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.47 Total: -15.89 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.77 Total: -50.02 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -1.96 Total: -46.29 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Atomic # 16 Polarization: 54.12 SS G_CDS: -0.61 Total: 53.51 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.02 -7.73 -35.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044243145.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.529 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds