Wall clock time and date at job start Fri Apr 10 2020 17:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 S 1.65598 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.42101 * 106.40398 * 178.53845 * 10 9 7 12 12 O 1.42098 * 106.40011 * 311.46286 * 10 9 7 13 13 C 1.76204 * 107.21832 * 65.00007 * 10 9 7 14 14 C 1.38235 * 120.41158 * 269.72347 * 13 10 9 15 15 N 1.31854 * 120.78121 * 179.74915 * 14 13 10 16 16 C 1.31877 * 121.73779 * 0.54230 * 15 14 13 17 17 C 1.38277 * 120.74969 * 359.72285 * 16 15 14 18 18 Br 1.89099 * 120.42829 * 179.97438 * 17 16 15 19 19 C 1.38606 * 120.41340 * 89.99833 * 13 10 9 20 20 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 22 22 H 1.07996 * 119.60879 * 0.02562 * 14 13 10 23 23 H 1.08006 * 119.62443 * 179.75173 * 16 15 14 24 24 H 1.07995 * 120.79716 * 359.95927 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 16 2.1534 -3.8223 0.0047 11 8 1.1740 -4.8510 0.0455 12 8 3.1318 -3.7207 -1.0208 13 6 3.0360 -3.9150 1.5269 14 6 4.3225 -3.4179 1.6213 15 7 4.9878 -3.4791 2.7580 16 6 4.4640 -4.0211 3.8401 17 6 3.1840 -4.5439 3.8203 18 35 2.4421 -5.3198 5.3770 19 6 2.4512 -4.4924 2.6431 20 1 -0.4849 0.8401 0.0004 21 1 0.3555 -2.3880 0.0092 22 1 4.7864 -2.9702 0.7549 23 1 5.0412 -4.0567 4.7523 24 1 1.4491 -4.8923 2.5977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044243145.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:50 Heat of formation + Delta-G solvation = -56.935282 kcal Electronic energy + Delta-G solvation = -15273.131042 eV Core-core repulsion = 12359.102610 eV Total energy + Delta-G solvation = -2914.028432 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 305.946 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30287 -38.11076 -36.74345 -36.51093 -34.35795 -33.37260 -32.86391 -30.71165 -26.46186 -25.31478 -24.60383 -20.40200 -20.06374 -19.02812 -18.40297 -17.94020 -17.57481 -16.45990 -16.11917 -15.45963 -15.41270 -15.30239 -14.50476 -13.91709 -13.80311 -13.13366 -13.03318 -13.02157 -12.86989 -12.51685 -12.42497 -12.30541 -11.96585 -11.86997 -11.64980 -11.33338 -10.77518 -10.23046 -10.16854 -8.35404 -5.90255 -0.66612 -0.34154 -0.22965 0.28142 1.50107 1.53046 1.58954 2.14271 2.32715 2.62079 2.89736 3.17719 3.18868 3.46851 3.50302 3.70019 3.85254 4.17164 4.55989 4.61877 5.07375 5.15126 5.58518 6.46041 6.71542 6.91444 7.28441 8.81921 Molecular weight = 305.95amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.005509 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.951211 B = 5081.335843 C = 5470.637660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.310 4.310 8 H 0.112 0.888 9 N -0.964 5.964 10 S 2.668 3.332 11 O -1.005 7.005 12 O -0.983 6.983 13 C -0.721 4.721 14 C 0.203 3.797 15 N -0.498 5.498 16 C 0.175 3.825 17 C -0.175 4.175 18 Br -0.007 7.007 19 C 0.040 3.960 20 H 0.274 0.726 21 H 0.408 0.592 22 H 0.183 0.817 23 H 0.204 0.796 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -7.349 11.709 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.216 4.216 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.446 4.446 8 H 0.130 0.870 9 N -0.717 5.717 10 S 2.757 3.243 11 O -0.994 6.994 12 O -0.973 6.973 13 C -0.807 4.807 14 C 0.045 3.955 15 N -0.207 5.207 16 C 0.016 3.984 17 C -0.257 4.257 18 Br 0.077 6.923 19 C 0.011 3.989 20 H 0.083 0.917 21 H 0.244 0.756 22 H 0.200 0.800 23 H 0.220 0.780 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.590 -7.908 11.701 15.584 hybrid contribution -0.880 0.848 0.212 1.240 sum 5.710 -7.060 11.913 14.979 Atomic orbital electron populations 1.69774 1.07199 1.28942 1.50250 1.25983 0.96350 1.02293 0.96957 0.85194 0.77936 0.77166 0.79479 1.18922 1.20792 1.19001 1.19510 0.92637 0.83459 1.48992 0.86992 1.51435 1.16825 1.19246 1.84185 1.03591 0.72652 0.72462 0.75553 1.93440 1.60304 1.57563 1.88111 1.93482 1.62087 1.87036 1.54724 1.32602 1.10388 1.13335 1.24358 1.22911 0.88649 0.87694 0.96261 1.68016 1.36704 1.16419 0.99605 1.23684 0.90317 0.86697 0.97672 1.23120 0.99238 1.08289 0.95053 1.96741 1.84084 1.81092 1.30339 1.21472 0.99520 0.88337 0.89530 0.91675 0.75648 0.79984 0.77971 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.31 13.06 21.65 0.28 -48.02 14 2 C -0.01 -0.63 5.50 84.86 0.47 -0.17 14 3 Si 0.98 39.21 29.55 68.60 2.03 41.24 14 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 14 5 H -0.28 -11.26 7.11 99.48 0.71 -10.55 14 6 H -0.27 -10.19 7.11 99.48 0.71 -9.49 14 7 C -0.31 -15.00 9.63 84.03 0.81 -14.19 14 8 H 0.11 5.02 7.82 -2.91 -0.02 5.00 14 9 N -0.96 -44.26 5.75 -54.26 -0.31 -44.58 14 10 S 2.67 109.04 5.71 -56.49 -0.32 108.72 14 11 O -1.00 -43.41 17.36 -128.00 -2.22 -45.63 14 12 O -0.98 -43.85 17.01 -128.00 -2.18 -46.03 14 13 C -0.72 -25.47 5.91 22.36 0.13 -25.34 14 14 C 0.20 6.77 10.69 84.69 0.91 7.68 14 15 N -0.50 -15.15 10.36 -195.77 -2.03 -17.17 14 16 C 0.18 4.45 10.95 84.70 0.93 5.38 14 17 C -0.17 -4.70 6.25 22.40 0.14 -4.56 14 18 Br -0.01 -0.15 33.74 -20.37 -0.69 -0.84 14 19 C 0.04 1.26 9.41 22.48 0.21 1.47 14 20 H 0.27 13.68 8.31 -92.71 -0.77 12.91 14 21 H 0.41 19.39 8.02 -96.74 -0.78 18.61 14 22 H 0.18 5.74 7.62 -2.91 -0.02 5.72 14 23 H 0.20 3.51 8.06 -2.91 -0.02 3.49 14 24 H 0.16 4.82 7.71 -2.91 -0.02 4.80 14 Total: -1.00 -59.77 259.74 -1.36 -61.14 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.48 Total: 20.91 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.59 Total: -29.73 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -2.06 Total: -109.77 kcal Atomic # 8 Polarization: -87.26 SS G_CDS: -4.40 Total: -91.66 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 16 Polarization: 109.04 SS G_CDS: -0.32 Total: 108.72 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -59.77 -1.36 -61.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044243145.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.201 kcal (2) G-P(sol) polarization free energy of solvation -59.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds