Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48500 * 109.46963 * 239.99613 * 3 2 1 5 5 H 1.48502 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47564 * 119.99705 * 3 2 1 7 7 C 1.38795 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00333 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47338 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46953 * 180.02562 * 15 14 13 17 17 N 1.30805 * 126.24662 * 90.02564 * 16 15 14 18 18 N 1.28680 * 110.29201 * 179.97438 * 17 16 15 19 19 C 1.32303 * 109.48263 * 0.02562 * 18 17 16 20 20 C 1.40816 * 133.46783 * 180.02562 * 19 18 17 21 21 C 1.36029 * 119.22974 * 179.23797 * 20 19 18 22 22 C 1.40553 * 119.74005 * 0.61624 * 21 20 19 23 23 C 1.34949 * 120.36935 * 359.58486 * 22 21 20 24 24 N 1.36063 * 126.24798 * 269.71897 * 16 15 14 25 25 H 0.97002 * 119.99546 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47169 * 59.99896 * 10 9 7 27 27 H 1.09000 * 109.47035 * 299.99863 * 10 9 7 28 28 H 0.96995 * 120.00018 * 0.27749 * 13 11 10 29 29 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 30 30 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 31 31 H 1.09000 * 109.47486 * 300.00065 * 15 14 13 32 32 H 1.09001 * 109.47362 * 60.00788 * 15 14 13 33 33 H 1.08000 * 120.38519 * 359.94734 * 20 19 18 34 34 H 1.07993 * 120.12987 * 180.20429 * 21 20 19 35 35 H 1.08000 * 119.81231 * 179.61109 * 22 21 20 36 36 H 1.08000 * 119.74827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0030 13 7 2.8440 -6.3431 0.0037 14 6 2.3302 -7.7151 0.0051 15 6 3.5022 -8.6986 0.0063 16 6 2.9737 -10.1099 0.0071 17 7 2.7034 -10.8351 -1.0474 18 7 2.2698 -11.9937 -0.6930 19 6 2.2399 -12.0687 0.6276 20 6 1.8613 -13.0793 1.5322 21 6 1.9631 -12.8468 2.8686 22 6 2.4302 -11.6026 3.3262 23 6 2.7854 -10.6420 2.4475 24 7 2.6962 -10.8644 1.1049 25 1 -0.4849 0.8401 -0.0004 26 1 3.1237 -3.7310 0.8925 27 1 3.1250 -3.7318 -0.8875 28 1 3.8007 -6.1836 0.0077 29 1 1.7217 -7.8744 0.8954 30 1 1.7214 -7.8759 -0.8846 31 1 4.1110 -8.5395 -0.8837 32 1 4.1107 -8.5376 0.8963 33 1 1.5052 -14.0320 1.1691 34 1 1.6799 -13.6127 3.5752 35 1 2.5055 -11.4145 4.3870 36 1 3.1434 -9.6898 2.8102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046024888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = 68.214197 kcal Electronic energy + Delta-G solvation = -20868.929183 eV Core-core repulsion = 17481.147115 eV Total energy + Delta-G solvation = -3387.782068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.92147 -39.25964 -38.60370 -35.82552 -34.30700 -32.44860 -32.28775 -31.30506 -29.63056 -28.09009 -25.52129 -24.68882 -24.09961 -23.50769 -21.61059 -20.48710 -18.49016 -17.90075 -17.53311 -17.02287 -16.47444 -16.16828 -15.87975 -15.80247 -15.22858 -14.82099 -14.47457 -14.21362 -13.81479 -13.30204 -13.11877 -13.00387 -12.62018 -12.48164 -12.40635 -12.32601 -11.94890 -11.62543 -11.54583 -11.06602 -11.05198 -10.86281 -10.78809 -9.98500 -9.84833 -9.49836 -9.08938 -9.00841 -8.49864 -8.26551 -6.52543 -6.23190 -3.94333 0.14975 0.64313 1.84393 2.29125 2.89069 2.95496 3.03062 3.22221 3.25355 3.28315 3.52782 3.69532 3.98553 4.03759 4.18693 4.22919 4.30507 4.43812 4.52160 4.70910 4.99857 5.03668 5.11835 5.11960 5.22785 5.38117 5.54833 5.56957 5.61596 5.64328 5.78708 5.85274 5.86060 6.09797 6.40651 6.47613 7.57170 7.59977 8.18411 8.33196 8.53297 9.21884 10.84171 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.002195 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.557026 B =12755.894124 C =12968.564944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.739 5.739 14 C 0.127 3.873 15 C -0.040 4.040 16 C 0.150 3.850 17 N -0.239 5.239 18 N -0.288 5.288 19 C 0.191 3.809 20 C -0.079 4.079 21 C -0.088 4.088 22 C -0.137 4.137 23 C 0.067 3.933 24 N -0.388 5.388 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 -24.790 8.506 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.395 5.395 14 C 0.001 3.999 15 C -0.080 4.080 16 C -0.113 4.113 17 N -0.079 5.079 18 N -0.134 5.134 19 C -0.058 4.058 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.158 4.158 23 C -0.056 4.056 24 N -0.068 5.068 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.234 0.766 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.696 -25.337 6.850 27.352 hybrid contribution 2.543 1.658 1.397 3.341 sum 10.239 -23.679 8.247 27.084 Atomic orbital electron populations 1.70010 1.05960 1.27601 1.46690 1.24998 0.95041 0.99053 0.94514 0.86216 0.79228 0.81206 0.78797 1.19913 1.20809 1.19947 1.22820 0.94868 0.91618 1.59159 0.90939 1.85433 1.04853 0.96348 1.96735 1.23525 1.06649 0.95129 1.05032 1.20343 0.86485 0.86245 0.75067 1.90722 1.15394 1.85549 1.47145 1.45926 1.10088 1.05021 1.78441 1.21161 0.94937 0.80491 1.03269 1.20193 0.98087 0.84054 1.05639 1.24516 1.08186 0.97618 0.80981 1.74264 1.11794 0.98591 1.23272 1.75003 1.20094 1.12285 1.05997 1.22380 1.02910 0.87604 0.92899 1.20320 1.00770 0.97827 0.91073 1.21226 0.97438 0.97324 0.95258 1.20995 1.01120 0.93083 1.00628 1.21735 1.01962 1.02075 0.79788 1.43711 1.42425 1.13564 1.07086 0.92101 0.89152 0.89036 0.76630 0.91750 0.90503 0.86998 0.89124 0.82498 0.83379 0.82511 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.61 7.85 -10.99 -0.09 9.53 16 12 O -0.51 -11.63 15.86 5.55 0.09 -11.54 16 13 N -0.74 -9.02 5.56 -60.29 -0.33 -9.36 16 14 C 0.13 1.43 5.66 -4.04 -0.02 1.41 16 15 C -0.04 -0.32 5.85 -27.88 -0.16 -0.48 16 16 C 0.15 1.63 7.39 -154.22 -1.14 0.49 16 17 N -0.24 -3.38 12.19 32.95 0.40 -2.97 16 18 N -0.29 -4.06 12.31 31.14 0.38 -3.67 16 19 C 0.19 2.08 7.92 -156.06 -1.24 0.85 16 20 C -0.08 -0.55 10.11 -39.40 -0.40 -0.94 16 21 C -0.09 -0.38 10.07 -39.50 -0.40 -0.78 16 22 C -0.14 -0.57 9.98 -39.88 -0.40 -0.97 16 23 C 0.07 0.40 10.91 -16.69 -0.18 0.22 16 24 N -0.39 -3.72 2.95 -59.73 -0.18 -3.90 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.40 3.43 8.47 -40.82 -0.35 3.08 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.19 8.06 -52.49 -0.42 -0.23 16 35 H 0.16 0.18 8.06 -52.49 -0.42 -0.24 16 36 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -38.79 336.08 -8.80 -47.59 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.12 Total: -1.98 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.60 Total: -6.27 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 1.01 Total: -45.22 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.79 -8.80 -47.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046024888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.801 kcal (2) G-P(sol) polarization free energy of solvation -38.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds