Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48500 * 109.46963 * 239.99613 * 3 2 1 5 5 H 1.48502 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47564 * 119.99705 * 3 2 1 7 7 C 1.38795 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00333 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47338 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46953 * 180.02562 * 15 14 13 17 17 N 1.30805 * 126.24662 * 90.02564 * 16 15 14 18 18 N 1.28680 * 110.29201 * 179.97438 * 17 16 15 19 19 C 1.32303 * 109.48263 * 0.02562 * 18 17 16 20 20 C 1.40816 * 133.46783 * 180.02562 * 19 18 17 21 21 C 1.36029 * 119.22974 * 179.23797 * 20 19 18 22 22 C 1.40553 * 119.74005 * 0.61624 * 21 20 19 23 23 C 1.34949 * 120.36935 * 359.58486 * 22 21 20 24 24 N 1.36063 * 126.24798 * 269.71897 * 16 15 14 25 25 H 0.97002 * 119.99546 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47169 * 59.99896 * 10 9 7 27 27 H 1.09000 * 109.47035 * 299.99863 * 10 9 7 28 28 H 0.96995 * 120.00018 * 0.27749 * 13 11 10 29 29 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 30 30 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 31 31 H 1.09000 * 109.47486 * 300.00065 * 15 14 13 32 32 H 1.09001 * 109.47362 * 60.00788 * 15 14 13 33 33 H 1.08000 * 120.38519 * 359.94734 * 20 19 18 34 34 H 1.07993 * 120.12987 * 180.20429 * 21 20 19 35 35 H 1.08000 * 119.81231 * 179.61109 * 22 21 20 36 36 H 1.08000 * 119.74827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0030 13 7 2.8440 -6.3431 0.0037 14 6 2.3302 -7.7151 0.0051 15 6 3.5022 -8.6986 0.0063 16 6 2.9737 -10.1099 0.0071 17 7 2.7034 -10.8351 -1.0474 18 7 2.2698 -11.9937 -0.6930 19 6 2.2399 -12.0687 0.6276 20 6 1.8613 -13.0793 1.5322 21 6 1.9631 -12.8468 2.8686 22 6 2.4302 -11.6026 3.3262 23 6 2.7854 -10.6420 2.4475 24 7 2.6962 -10.8644 1.1049 25 1 -0.4849 0.8401 -0.0004 26 1 3.1237 -3.7310 0.8925 27 1 3.1250 -3.7318 -0.8875 28 1 3.8007 -6.1836 0.0077 29 1 1.7217 -7.8744 0.8954 30 1 1.7214 -7.8759 -0.8846 31 1 4.1110 -8.5395 -0.8837 32 1 4.1107 -8.5376 0.8963 33 1 1.5052 -14.0320 1.1691 34 1 1.6799 -13.6127 3.5752 35 1 2.5055 -11.4145 4.3870 36 1 3.1434 -9.6898 2.8102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046024888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = 40.795784 kcal Electronic energy + Delta-G solvation = -20870.118135 eV Core-core repulsion = 17481.147115 eV Total energy + Delta-G solvation = -3388.971020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.61513 -40.65146 -39.16099 -36.86160 -35.08239 -34.57333 -33.17665 -31.97528 -30.82651 -29.05239 -27.64888 -25.21974 -24.96787 -24.20820 -22.33764 -21.79592 -19.86149 -19.10267 -18.14821 -17.87989 -17.72640 -17.05920 -16.86497 -16.85904 -16.65488 -15.92673 -15.87035 -15.27302 -15.00395 -14.76926 -14.36659 -13.70460 -13.65311 -13.45879 -13.31954 -13.15982 -13.05520 -12.85966 -12.65846 -12.61964 -12.54662 -12.11561 -11.74340 -11.62033 -11.11757 -11.04015 -10.61123 -10.26384 -10.21950 -9.11308 -8.66231 -8.33491 -6.11864 -0.31134 0.05452 1.20024 1.30014 1.45083 1.46976 1.54283 1.58665 1.61034 2.21684 2.29075 2.36436 3.00718 3.01315 3.31239 3.43843 3.48566 3.64076 3.73886 3.89003 4.01231 4.07164 4.10590 4.29302 4.33974 4.53545 4.60199 4.69225 4.79517 4.87917 4.97720 5.04537 5.17323 5.31284 5.42962 5.43748 5.87750 6.20815 6.47715 7.07755 7.22096 7.40968 8.75448 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.002195 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.557026 B =12755.894124 C =12968.564944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.127 4.127 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.707 5.707 14 C 0.133 3.867 15 C -0.025 4.025 16 C 0.141 3.859 17 N -0.286 5.286 18 N -0.348 5.348 19 C 0.182 3.818 20 C -0.112 4.112 21 C -0.060 4.060 22 C -0.127 4.127 23 C 0.046 3.954 24 N -0.390 5.390 25 H 0.271 0.729 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.423 0.577 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.169 0.831 34 H 0.188 0.812 35 H 0.198 0.802 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.800 -25.015 11.206 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.069 5.931 10 C -0.278 4.278 11 C 0.320 3.680 12 O -0.446 6.446 13 N -0.362 5.362 14 C 0.008 3.992 15 C -0.064 4.064 16 C -0.123 4.123 17 N -0.125 5.125 18 N -0.194 5.194 19 C -0.067 4.067 20 C -0.133 4.133 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.076 4.076 24 N -0.070 5.070 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.215 0.785 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 10.564 -25.604 9.548 29.297 hybrid contribution 1.691 1.535 0.730 2.398 sum 12.256 -24.069 10.278 28.899 Atomic orbital electron populations 1.70187 1.08029 1.28638 1.48040 1.26150 0.95964 1.03412 0.93794 0.84994 0.77768 0.75626 0.79552 1.18705 1.20616 1.18441 1.23174 0.95404 0.91846 1.58809 0.89646 1.85655 1.10853 0.99480 1.97083 1.23358 1.03457 0.93772 1.07249 1.20133 0.86137 0.86797 0.74920 1.90714 1.17747 1.86139 1.50039 1.45542 1.10648 1.04204 1.75834 1.21106 0.96182 0.80261 1.01693 1.20185 0.96691 0.81375 1.08164 1.24825 1.08176 0.98337 0.80999 1.74094 1.13455 0.99440 1.25483 1.74843 1.23171 1.13083 1.08258 1.22923 1.02282 0.88936 0.92592 1.20665 1.02930 0.97876 0.91846 1.21792 0.93923 0.98159 0.94573 1.21612 0.98706 0.92135 1.02293 1.22509 1.02559 1.04130 0.78383 1.43859 1.42084 1.12854 1.08177 0.92051 0.86490 0.86951 0.73898 0.92218 0.93443 0.85940 0.85104 0.81398 0.79483 0.78507 0.78341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 1.00 43.02 29.55 68.60 2.03 45.04 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.54 -30.58 9.50 67.95 0.65 -29.93 16 8 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 10 C -0.13 -4.77 6.16 71.23 0.44 -4.33 16 11 C 0.53 18.84 7.85 87.66 0.69 19.52 16 12 O -0.57 -26.27 15.86 -3.04 -0.05 -26.32 16 13 N -0.71 -15.71 5.56 -463.05 -2.57 -18.28 16 14 C 0.13 2.87 5.66 86.38 0.49 3.36 16 15 C -0.02 -0.34 5.85 29.85 0.17 -0.17 16 16 C 0.14 3.06 7.39 137.71 1.02 4.08 16 17 N -0.29 -8.56 12.19 -49.68 -0.61 -9.17 16 18 N -0.35 -10.54 12.31 -55.40 -0.68 -11.22 16 19 C 0.18 4.05 7.92 134.07 1.06 5.11 16 20 C -0.11 -1.44 10.11 22.39 0.23 -1.22 16 21 C -0.06 -0.31 10.07 22.32 0.22 -0.08 16 22 C -0.13 -0.51 9.98 22.08 0.22 -0.29 16 23 C 0.05 0.41 10.91 83.23 0.91 1.31 16 24 N -0.39 -7.12 2.95 -342.88 -1.01 -8.14 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 26 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 27 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 28 H 0.42 5.64 8.47 -92.71 -0.79 4.85 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.19 -0.50 8.06 -2.91 -0.02 -0.52 16 35 H 0.20 -0.76 8.06 -2.91 -0.02 -0.79 16 36 H 0.20 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -92.20 336.08 3.12 -89.08 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.33 Total: 6.00 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.56 Total: -1.52 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -4.59 Total: -102.46 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.32 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -92.20 3.12 -89.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046024888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.877 kcal (2) G-P(sol) polarization free energy of solvation -92.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds