Wall clock time and date at job start Fri Apr 10 2020 17:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47582 * 357.17528 * 3 2 1 5 5 C 1.37109 * 120.00154 * 85.03509 * 4 3 2 6 6 H 1.07994 * 119.99794 * 210.41512 * 5 4 3 7 7 C 1.38948 * 119.99625 * 30.42085 * 5 4 3 8 8 N 1.31417 * 120.00096 * 40.41098 * 7 5 4 9 9 Si 1.86800 * 119.99995 * 220.40381 * 7 5 4 10 10 H 1.48492 * 109.47090 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46606 * 60.00032 * 9 7 5 12 12 H 1.48495 * 109.46875 * 300.00411 * 9 7 5 13 13 C 1.34782 * 120.00002 * 265.04126 * 4 3 2 14 14 O 1.21287 * 119.99811 * 179.97438 * 13 4 3 15 15 C 1.50692 * 119.99711 * 359.97438 * 13 4 3 16 16 H 1.08999 * 110.66815 * 55.70254 * 15 13 4 17 17 C 1.54707 * 110.75268 * 292.48490 * 15 13 4 18 18 C 1.51649 * 101.92906 * 266.96785 * 17 15 13 19 19 C 1.37741 * 132.16516 * 164.59374 * 18 17 15 20 20 C 1.38448 * 119.96848 * 180.37718 * 19 18 17 21 21 Cl 1.73603 * 120.13004 * 179.97438 * 20 19 18 22 22 C 1.38390 * 119.74636 * 0.02562 * 20 19 18 23 23 C 1.37927 * 120.32982 * 359.78504 * 22 20 19 24 24 C 1.38876 * 107.04103 * 344.61682 * 18 17 15 25 25 O 1.36600 * 111.29274 * 358.89582 * 24 18 17 26 26 H 1.09000 * 109.47034 * 237.16933 * 3 2 1 27 27 H 1.09003 * 109.46872 * 117.17508 * 3 2 1 28 28 H 0.97002 * 119.99762 * 5.84612 * 8 7 5 29 29 H 1.09003 * 110.93435 * 25.12199 * 17 15 13 30 30 H 1.09000 * 110.94343 * 148.80881 * 17 15 13 31 31 H 1.08003 * 120.01779 * 0.35927 * 19 18 17 32 32 H 1.07996 * 119.83518 * 179.81472 * 22 20 19 33 33 H 1.07997 * 119.87224 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3786 0.0681 5 6 3.2291 -2.1166 -1.0799 6 1 3.1025 -3.1887 -1.0501 7 6 3.5258 -1.4851 -2.2814 8 7 4.3974 -0.5019 -2.3093 9 14 2.6861 -2.0337 -3.8573 10 1 3.1727 -1.2074 -4.9910 11 1 1.2169 -1.8686 -3.7185 12 1 3.0016 -3.4617 -4.1149 13 6 3.4171 -1.9221 1.2592 14 8 3.8215 -3.0642 1.3155 15 6 3.2724 -1.1108 2.5208 16 1 2.2547 -0.7334 2.6209 17 6 4.2929 0.0517 2.5450 18 6 5.4554 -0.5672 3.2967 19 6 6.7734 -0.1911 3.4334 20 6 7.6381 -0.9636 4.1899 21 17 9.3003 -0.4938 4.3644 22 6 7.1727 -2.1122 4.8057 23 6 5.8522 -2.4876 4.6726 24 6 4.9753 -1.7136 3.9164 25 8 3.6428 -1.8886 3.6718 26 1 2.9711 0.5580 0.8635 27 1 2.9711 0.4702 -0.9143 28 1 4.8959 -0.2729 -1.5093 29 1 4.5879 0.3321 1.5338 30 1 3.8928 0.9101 3.0847 31 1 7.1322 0.7058 2.9504 32 1 7.8467 -2.7174 5.3937 33 1 5.4968 -3.3852 5.1567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065595880.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:40 Heat of formation + Delta-G solvation = -16.158400 kcal Electronic energy + Delta-G solvation = -22441.760066 eV Core-core repulsion = 18880.149775 eV Total energy + Delta-G solvation = -3561.610290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 306.056 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.60399 -40.41336 -38.73797 -37.87602 -37.12946 -36.59371 -34.41754 -33.45217 -30.96026 -30.72398 -29.33162 -26.94594 -25.02660 -23.54083 -22.89466 -21.54044 -20.15892 -19.23006 -18.48754 -18.08378 -17.77136 -17.17993 -16.73740 -16.23725 -15.75330 -15.54513 -15.28152 -15.06087 -14.96112 -14.54780 -14.36985 -14.17680 -13.89211 -13.69740 -13.60594 -13.36438 -13.22907 -12.98293 -12.70705 -12.49828 -12.32483 -12.10259 -11.95782 -11.94859 -11.71361 -11.03331 -10.50969 -10.06280 -10.02022 -9.13235 -8.90439 -6.11699 0.06045 0.17627 1.09905 1.36934 1.39224 1.57621 1.67762 1.76770 1.80777 2.05632 2.36769 2.54962 2.65455 2.82412 3.12636 3.23951 3.37707 3.57969 3.76449 4.03115 4.06098 4.08073 4.18651 4.46368 4.48753 4.59938 4.61762 4.80343 4.94386 5.13245 5.24765 5.34824 5.70716 5.89943 5.95088 6.39233 6.47707 6.78068 7.16385 7.68486 8.33622 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.004380 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.362053 B = 6391.088136 C = 7023.287204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.220 3.780 3 C 0.177 3.823 4 N -0.443 5.443 5 C -0.453 4.453 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.842 5.842 9 Si 1.089 2.911 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.432 3.568 14 O -0.599 6.599 15 C 0.066 3.934 16 H 0.155 0.845 17 C -0.097 4.097 18 C -0.165 4.165 19 C -0.062 4.062 20 C -0.071 4.071 21 Cl -0.059 7.059 22 C -0.073 4.073 23 C -0.135 4.135 24 C 0.089 3.911 25 O -0.294 6.294 26 H 0.157 0.843 27 H 0.129 0.871 28 H 0.278 0.722 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 7.305 11.648 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.099 4.099 3 C 0.051 3.949 4 N -0.165 5.165 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.200 4.200 8 N -0.473 5.473 9 Si 0.911 3.089 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.222 3.778 14 O -0.483 6.483 15 C 0.006 3.994 16 H 0.172 0.828 17 C -0.134 4.134 18 C -0.166 4.166 19 C -0.081 4.081 20 C -0.098 4.098 21 Cl -0.030 7.030 22 C -0.092 4.092 23 C -0.154 4.154 24 C 0.044 3.956 25 O -0.207 6.207 26 H 0.174 0.826 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.169 0.831 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.739 6.996 10.204 13.249 hybrid contribution 0.569 -0.909 1.312 1.695 sum 5.308 6.087 11.517 14.066 Atomic orbital electron populations 1.81077 1.13963 1.08849 1.10620 1.30133 0.95876 0.92149 0.91715 1.19687 0.80112 0.86416 1.08672 1.43504 1.55394 1.12123 1.05436 1.19905 1.57571 0.93404 0.86981 0.92936 1.27124 0.94094 0.95509 1.03224 1.70910 1.14533 1.30203 1.31621 0.83250 0.75943 0.76764 0.72913 1.19039 1.20636 1.20427 1.21431 0.81428 0.88879 0.86043 1.90556 1.50179 1.20859 1.86684 1.23472 1.03197 0.89803 0.82927 0.82802 1.22082 0.90667 0.97496 1.03138 1.20798 0.95894 0.96742 1.03201 1.20326 0.90151 1.00436 0.97157 1.20745 0.86661 0.98414 1.03936 1.98357 1.16042 1.91838 1.96782 1.20988 0.94377 0.95218 0.98576 1.20460 0.91691 1.00477 1.02769 1.20144 0.84194 0.94426 0.96860 1.86996 1.21081 1.69070 1.43518 0.82615 0.85400 0.91147 0.87206 0.83081 0.82523 0.81667 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.99 18.54 20.01 0.37 -17.61 16 2 C 0.22 7.79 15.73 89.44 1.41 9.20 16 3 C 0.18 5.84 4.79 84.57 0.41 6.24 16 4 N -0.44 -19.39 2.40 -645.43 -1.55 -20.94 16 5 C -0.45 -23.46 8.76 84.04 0.74 -22.72 16 6 H 0.05 3.13 7.76 -2.91 -0.02 3.10 16 7 C 0.01 0.51 4.52 84.93 0.38 0.89 16 8 N -0.84 -39.86 12.22 21.66 0.26 -39.60 16 9 Si 1.09 44.39 30.06 68.60 2.06 46.45 16 10 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.43 19.24 6.91 87.65 0.61 19.85 16 14 O -0.60 -33.35 16.27 15.18 0.25 -33.10 16 15 C 0.07 2.11 3.15 30.43 0.10 2.21 16 16 H 0.15 4.01 8.02 -2.39 -0.02 3.99 16 17 C -0.10 -2.30 5.29 30.73 0.16 -2.14 16 18 C -0.17 -4.61 6.26 -19.53 -0.12 -4.73 16 19 C -0.06 -1.52 9.82 22.20 0.22 -1.30 16 20 C -0.07 -1.68 6.33 22.36 0.14 -1.54 16 21 Cl -0.06 -1.22 28.97 -2.72 -0.08 -1.30 16 22 C -0.07 -1.71 9.81 22.23 0.22 -1.49 16 23 C -0.14 -3.77 10.06 22.45 0.23 -3.55 16 24 C 0.09 2.88 6.87 22.67 0.16 3.03 16 25 O -0.29 -10.54 10.46 -82.27 -0.86 -11.40 16 26 H 0.16 3.49 4.47 -2.39 -0.01 3.48 16 27 H 0.13 4.44 5.74 -2.39 -0.01 4.43 16 28 H 0.28 12.91 8.12 -92.71 -0.75 12.16 16 29 H 0.11 2.53 6.40 -2.39 -0.02 2.52 16 30 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -69.39 311.37 6.28 -63.10 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.20 Total: 10.44 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.63 Total: 3.96 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -0.92 Total: -78.15 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.61 Total: -44.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.06 Total: 46.45 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -69.39 6.28 -63.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065595880.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.946 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds