Wall clock time and date at job start Fri Apr 10 2020 17:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35799 * 117.00524 * 2 1 4 4 C 1.39632 * 119.30500 * 359.97438 * 3 2 1 5 5 C 1.35998 * 121.53774 * 179.97438 * 4 3 2 6 6 C 1.40837 * 119.64241 * 0.02562 * 5 4 3 7 7 C 1.39754 * 121.73945 * 180.02562 * 6 5 4 8 8 C 1.40084 * 119.17273 * 179.22207 * 7 6 5 9 9 C 1.41092 * 119.55098 * 180.23630 * 8 7 6 10 10 H 1.07999 * 119.99633 * 330.29532 * 9 8 7 11 11 C 1.39910 * 120.00198 * 150.29246 * 9 8 7 12 12 N 1.30862 * 119.99809 * 161.68174 * 11 9 8 13 13 Si 1.86795 * 120.00208 * 341.67984 * 11 9 8 14 14 H 1.48502 * 109.47093 * 95.42633 * 13 11 9 15 15 H 1.48501 * 109.47536 * 215.42343 * 13 11 9 16 16 H 1.48500 * 109.47216 * 335.42605 * 13 11 9 17 17 C 1.41379 * 120.89698 * 0.72367 * 8 7 6 18 18 C 1.35279 * 121.39221 * 359.53306 * 17 8 7 19 19 C 1.41073 * 119.97087 * 359.97438 * 18 17 8 20 20 C 1.38132 * 119.31108 * 180.02562 * 3 2 1 21 21 Br 1.89103 * 120.30431 * 359.97438 * 20 3 2 22 22 H 1.08997 * 109.47494 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46709 * 300.00212 * 1 2 3 24 24 H 1.09003 * 109.46663 * 59.99671 * 1 2 3 25 25 H 1.08008 * 119.23474 * 0.02562 * 4 3 2 26 26 H 1.07997 * 120.18194 * 179.97438 * 5 4 3 27 27 H 1.08003 * 120.41104 * 359.97438 * 7 6 5 28 28 H 0.96998 * 119.99729 * 180.02562 * 12 11 9 29 29 H 1.08001 * 119.29946 * 179.51499 * 17 8 7 30 30 H 1.08003 * 120.01161 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2711 2.3717 -0.0005 5 6 1.8410 3.6066 0.0000 6 6 3.2442 3.7261 0.0005 7 6 3.8759 4.9728 0.0015 8 6 5.2755 5.0291 0.0186 9 6 5.9214 6.2835 0.0249 10 1 5.4520 7.1348 -0.4455 11 6 7.1698 6.4245 0.6405 12 7 7.9288 7.4511 0.3532 13 14 7.7533 5.1474 1.8725 14 1 8.6116 4.1506 1.1833 15 1 8.5335 5.8147 2.9454 16 1 6.5786 4.4614 2.4683 17 6 6.0497 3.8462 0.0194 18 6 5.4694 2.6242 0.0131 19 6 4.0631 2.5119 0.0062 20 6 3.4258 1.2655 -0.0005 21 35 4.4450 -0.3274 -0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.1943 2.2878 -0.0005 26 1 1.2208 4.4907 -0.0009 27 1 3.2921 5.8814 0.0015 28 1 8.7945 7.5486 0.7798 29 1 7.1272 3.9197 0.0248 30 1 6.0824 1.7350 0.0135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072226982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:20 Heat of formation + Delta-G solvation = -15.221838 kcal Electronic energy + Delta-G solvation = -16600.834596 eV Core-core repulsion = 13792.544481 eV Total energy + Delta-G solvation = -2808.290115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 306.000 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12529 -39.55458 -36.91055 -35.03207 -34.06862 -31.65695 -31.05826 -29.85556 -28.16374 -26.59905 -24.02627 -23.00801 -22.21695 -19.93720 -18.97474 -18.03484 -17.30479 -16.73957 -16.59544 -16.12335 -15.41371 -15.20514 -14.71073 -14.39029 -14.30037 -13.98804 -13.83774 -13.36554 -13.14455 -12.71127 -12.53511 -12.28780 -11.92371 -11.92010 -11.83488 -11.48192 -11.36137 -11.04210 -10.90281 -10.21861 -9.16947 -8.96743 -8.60558 -6.43369 -0.39041 0.25314 0.79992 1.11641 1.24459 1.43346 1.45388 1.96234 2.09062 2.45063 2.75750 3.47730 3.85690 4.01476 4.03850 4.26321 4.43398 4.48483 4.51302 4.57785 4.62833 4.80045 4.80929 5.09003 5.13351 5.24990 5.37874 5.54735 5.59848 5.77966 5.87898 6.15001 6.24171 6.46514 6.63414 6.74329 8.11043 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.005684 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.074527 B = 4924.949792 C = 5957.289865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.107 3.893 4 C -0.173 4.173 5 C -0.084 4.084 6 C -0.036 4.036 7 C -0.234 4.234 8 C 0.068 3.932 9 C -0.472 4.472 10 H 0.064 0.936 11 C 0.052 3.948 12 N -0.837 5.837 13 Si 0.951 3.049 14 H -0.253 1.253 15 H -0.271 1.271 16 H -0.255 1.255 17 C -0.177 4.177 18 C -0.097 4.097 19 C -0.099 4.099 20 C -0.117 4.117 21 Br -0.048 7.048 22 H 0.118 0.882 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.165 0.835 26 H 0.153 0.847 27 H 0.116 0.884 28 H 0.296 0.704 29 H 0.107 0.893 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 -14.184 1.062 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.060 3.940 4 C -0.191 4.191 5 C -0.102 4.102 6 C -0.037 4.037 7 C -0.254 4.254 8 C 0.065 3.935 9 C -0.501 4.501 10 H 0.082 0.918 11 C -0.164 4.164 12 N -0.463 5.463 13 Si 0.774 3.226 14 H -0.178 1.178 15 H -0.197 1.197 16 H -0.179 1.179 17 C -0.195 4.195 18 C -0.115 4.115 19 C -0.101 4.101 20 C -0.197 4.197 21 Br 0.038 6.962 22 H 0.137 0.863 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.182 0.818 26 H 0.170 0.830 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.381 -14.771 1.064 18.085 hybrid contribution 0.328 0.670 0.275 0.795 sum -10.052 -14.100 1.339 17.368 Atomic orbital electron populations 1.23361 0.76537 1.05508 1.02326 1.86097 1.23322 1.25716 1.88768 1.18469 0.90025 0.85725 0.99805 1.21050 1.01109 0.90774 1.06205 1.21179 0.92651 0.98413 0.97977 1.19022 0.93623 0.91852 0.99237 1.21065 0.93378 0.95420 1.15532 1.17775 0.92971 0.92361 0.90374 1.19473 1.01890 0.96040 1.32654 0.91761 1.26766 0.94817 0.97595 0.97248 1.69718 1.10201 1.29859 1.36481 0.85726 0.79631 0.78683 0.78577 1.17782 1.19685 1.17887 1.21048 0.99142 0.93124 1.06225 1.20874 0.93491 0.97405 0.99747 1.18372 0.93201 0.90731 1.07795 1.20901 0.91767 0.90972 1.16023 1.96469 1.71612 1.30269 1.97899 0.86332 0.91612 0.91582 0.81754 0.82978 0.86617 0.89280 0.87517 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.79 113.37 1.11 1.38 16 2 O -0.33 -8.88 9.76 -91.29 -0.89 -9.77 16 3 C 0.11 3.42 6.67 22.58 0.15 3.57 16 4 C -0.17 -4.78 8.90 22.09 0.20 -4.59 16 5 C -0.08 -2.67 9.80 22.39 0.22 -2.45 16 6 C -0.04 -1.48 5.87 -20.13 -0.12 -1.60 16 7 C -0.23 -10.63 9.56 23.08 0.22 -10.41 16 8 C 0.07 3.39 5.09 -21.36 -0.11 3.28 16 9 C -0.47 -25.56 9.51 23.38 0.22 -25.34 16 10 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 11 C 0.05 2.69 5.38 85.24 0.46 3.15 16 12 N -0.84 -44.28 13.93 21.82 0.30 -43.98 16 13 Si 0.95 41.20 24.49 68.60 1.68 42.88 16 14 H -0.25 -10.29 6.70 99.48 0.67 -9.62 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 16 H -0.26 -11.47 6.88 99.48 0.68 -10.78 16 17 C -0.18 -8.29 6.98 22.36 0.16 -8.14 16 18 C -0.10 -4.16 9.38 22.28 0.21 -3.95 16 19 C -0.10 -4.10 5.88 -20.02 -0.12 -4.22 16 20 C -0.12 -4.31 6.27 22.67 0.14 -4.17 16 21 Br -0.05 -1.55 31.48 -20.37 -0.64 -2.20 16 22 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 0.91 7.61 -2.39 -0.02 0.89 16 24 H 0.07 0.91 7.61 -2.39 -0.02 0.89 16 25 H 0.17 3.12 6.14 -2.91 -0.02 3.10 16 26 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 27 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 28 H 0.30 14.04 8.30 -92.71 -0.77 13.27 16 29 H 0.11 4.90 4.67 -2.91 -0.01 4.89 16 30 H 0.13 5.03 6.76 -2.91 -0.02 5.01 16 Total: -1.00 -59.60 272.85 4.30 -55.29 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.11 Total: 11.24 kcal Atomic # 6 Polarization: -56.22 SS G_CDS: 2.74 Total: -53.48 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.30 Total: -43.98 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.89 Total: -9.77 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.68 Total: 42.88 kcal Atomic # 35 Polarization: -1.55 SS G_CDS: -0.64 Total: -2.20 kcal Total: -59.60 4.30 -55.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072226982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.072 kcal (2) G-P(sol) polarization free energy of solvation -59.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds