Wall clock time and date at job start Fri Apr 10 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00249 * 2 1 4 4 C 1.50695 * 109.47549 * 179.97438 * 3 2 1 5 5 N 1.31786 * 119.08491 * 269.98186 * 4 3 2 6 6 C 1.32548 * 121.00684 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.39685 * 179.97438 * 6 5 4 8 8 C 1.38119 * 119.20422 * 359.73849 * 6 5 4 9 9 C 1.39624 * 118.32641 * 0.51589 * 8 6 5 10 10 N 1.38545 * 120.52635 * 179.75799 * 9 8 6 11 11 C 1.46498 * 119.99845 * 184.59052 * 10 9 8 12 12 C 1.50705 * 109.47137 * 270.00173 * 11 10 9 13 13 H 1.08000 * 119.99805 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99654 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99414 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00667 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47367 * 89.99791 * 16 14 12 18 18 H 1.48497 * 109.47402 * 210.00253 * 16 14 12 19 19 H 1.48505 * 109.46982 * 329.99960 * 16 14 12 20 20 C 1.46498 * 120.00100 * 4.59201 * 10 9 8 21 21 C 1.53000 * 109.47340 * 84.34107 * 20 10 9 22 22 C 1.53777 * 113.61593 * 185.66057 * 21 20 10 23 23 C 1.53789 * 87.17345 * 220.06235 * 22 21 20 24 24 C 1.53785 * 87.08013 * 25.39055 * 23 22 21 25 25 N 1.31756 * 119.07906 * 90.00033 * 4 3 2 26 26 H 1.09003 * 109.46592 * 60.00080 * 1 2 3 27 27 H 1.08999 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46962 * 299.99932 * 1 2 3 29 29 H 1.08999 * 109.46910 * 59.99122 * 3 2 1 30 30 H 1.09003 * 109.46594 * 300.00190 * 3 2 1 31 31 H 1.09010 * 109.46643 * 89.99761 * 7 6 5 32 32 H 1.08994 * 109.47423 * 209.99731 * 7 6 5 33 33 H 1.08996 * 109.47120 * 330.00033 * 7 6 5 34 34 H 1.07991 * 120.83417 * 180.25593 * 8 6 5 35 35 H 1.09001 * 109.47506 * 30.00477 * 11 10 9 36 36 H 1.08997 * 109.47328 * 150.00038 * 11 10 9 37 37 H 0.96999 * 120.00162 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47126 * 324.33732 * 20 10 9 39 39 H 1.09007 * 109.46879 * 204.34335 * 20 10 9 40 40 H 1.09002 * 112.90553 * 316.91623 * 21 20 10 41 41 H 1.09000 * 113.61242 * 105.47034 * 22 21 20 42 42 H 1.08997 * 113.61532 * 334.65213 * 22 21 20 43 43 H 1.08999 * 113.61568 * 139.93928 * 23 22 21 44 44 H 1.09000 * 113.60660 * 270.84479 * 23 22 21 45 45 H 1.08994 * 113.61444 * 89.11684 * 24 23 22 46 46 H 1.08998 * 113.61309 * 219.93523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.1507 1.1365 1.1526 6 6 5.4714 1.0325 1.1976 7 6 6.1872 0.9770 2.5226 8 6 6.1832 0.9706 0.0156 9 6 5.4767 1.0317 -1.1872 10 7 6.1452 0.9786 -2.3995 11 6 5.4044 1.1445 -3.6524 12 6 4.9339 -0.2017 -4.1399 13 1 5.1635 -1.0917 -3.5728 14 6 4.2105 -0.2969 -5.3097 15 7 3.8004 -1.4718 -5.7354 16 14 3.8128 1.2425 -6.2901 17 1 4.8966 1.4974 -7.2728 18 1 2.5273 1.0533 -7.0089 19 1 3.6984 2.4009 -5.3679 20 6 7.5930 0.7565 -2.4285 21 6 7.8804 -0.7445 -2.3550 22 6 9.3766 -1.0803 -2.2399 23 6 9.1115 -2.2455 -3.2081 24 6 7.9132 -1.4354 -3.7304 25 7 4.1514 1.1358 -1.1506 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 6.2790 -0.0610 2.8428 32 1 7.1801 1.4141 2.4178 33 1 5.6201 1.5376 3.2657 34 1 7.2594 0.8815 0.0215 35 1 4.5432 1.7907 -3.4825 36 1 6.0546 1.5955 -4.4020 37 1 3.2912 -1.5389 -6.5582 38 1 8.0545 1.2570 -1.5772 39 1 8.0040 1.1603 -3.3538 40 1 7.2595 -1.2599 -1.6222 41 1 9.6766 -1.4011 -1.2424 42 1 10.0297 -0.3108 -2.6513 43 1 9.8994 -2.3861 -3.9481 44 1 8.8279 -3.1720 -2.7088 45 1 8.1651 -0.7623 -4.5498 46 1 7.0324 -2.0431 -3.9375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084114442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:38 Heat of formation + Delta-G solvation = 32.300610 kcal Electronic energy + Delta-G solvation = -25942.160914 eV Core-core repulsion = 22447.160745 eV Total energy + Delta-G solvation = -3495.000169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53027 -38.68454 -37.49615 -36.13324 -33.66529 -32.67312 -31.35165 -29.22826 -28.55967 -27.46004 -26.44227 -25.55339 -25.11867 -23.06816 -22.49956 -21.40621 -20.10015 -18.98555 -17.17152 -16.88606 -16.55388 -16.26163 -15.43780 -15.30888 -15.06574 -14.78366 -14.49204 -14.23885 -14.18490 -13.67218 -13.28970 -12.83700 -12.65139 -12.38408 -12.23576 -12.17220 -12.01454 -12.00893 -11.83989 -11.68515 -11.47086 -11.17533 -10.89666 -10.69012 -10.45615 -10.17154 -10.05724 -9.93647 -9.80150 -9.68122 -9.47783 -9.32926 -9.07014 -8.54432 -8.50613 -7.09919 -6.02554 -3.98800 1.48192 1.97482 3.26884 3.34602 3.38764 3.49295 3.87246 4.41739 4.42828 4.65745 4.83718 4.97793 5.00546 5.09176 5.18560 5.29274 5.32256 5.34663 5.49182 5.51054 5.57522 5.59548 5.67869 5.68916 5.73530 5.75034 5.82950 5.84484 5.92370 6.01715 6.09141 6.13630 6.17579 6.22585 6.31097 6.58474 6.65983 6.77551 6.89901 6.96404 7.04308 7.32889 7.45018 7.64513 7.95771 8.10206 8.56819 8.92441 9.04400 9.57791 11.10735 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.006785 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.305333 B = 4125.491890 C = 6360.835901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.139 3.861 4 C 0.357 3.643 5 N -0.565 5.565 6 C 0.190 3.810 7 C -0.098 4.098 8 C -0.304 4.304 9 C 0.452 3.548 10 N -0.567 5.567 11 C 0.223 3.777 12 C -0.511 4.511 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.868 3.132 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.138 3.862 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.116 4.116 25 N -0.540 5.540 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 5.368 11.523 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.295 6.295 3 C 0.061 3.939 4 C 0.086 3.914 5 N -0.288 5.288 6 C 0.048 3.952 7 C -0.155 4.155 8 C -0.333 4.333 9 C 0.207 3.793 10 N -0.274 5.274 11 C 0.102 3.898 12 C -0.549 4.549 13 H 0.097 0.903 14 C -0.129 4.129 15 N -0.537 5.537 16 Si 0.695 3.305 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.190 1.190 20 C 0.014 3.986 21 C -0.141 4.141 22 C -0.173 4.173 23 C -0.185 4.185 24 C -0.154 4.154 25 N -0.265 5.265 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.730 5.193 11.118 13.151 hybrid contribution 0.376 0.684 -0.840 1.147 sum 5.105 5.878 10.277 12.893 Atomic orbital electron populations 1.22728 0.80795 1.02826 0.99797 1.87976 1.19640 1.26487 1.95389 1.20864 0.85896 0.85771 1.01416 1.22159 0.95740 0.90383 0.83139 1.67919 1.09322 1.21608 1.29938 1.21152 0.89403 0.89724 0.94959 1.20650 0.99137 1.03037 0.92692 1.21913 1.01674 1.17079 0.92616 1.18463 0.87945 0.86448 0.86409 1.46773 1.06255 1.70679 1.03697 1.19743 0.91744 0.98536 0.79773 1.21282 1.33757 0.92599 1.07296 0.90347 1.24797 0.95359 0.95458 0.97238 1.69890 1.37998 1.23021 1.22749 0.86982 0.78208 0.84643 0.80641 1.20426 1.21149 1.19041 1.21503 0.79956 0.95326 1.01796 1.22957 0.95525 0.95939 0.99649 1.22911 0.96396 0.98645 0.99343 1.22849 0.99322 0.97330 0.98956 1.22866 0.98109 0.98664 0.95727 1.67860 1.07904 1.20900 1.29804 0.93815 0.89586 0.94233 0.91212 0.90856 0.90354 0.90863 0.90561 0.84693 0.94045 0.96132 0.92799 0.91707 0.90127 0.89566 0.92147 0.90468 0.92127 0.90820 0.90455 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.95 10.69 -35.23 -0.38 -7.33 16 3 C 0.14 2.39 6.37 36.00 0.23 2.62 16 4 C 0.36 7.19 7.27 -157.24 -1.14 6.04 16 5 N -0.57 -10.55 10.27 -7.07 -0.07 -10.62 16 6 C 0.19 3.13 6.82 -82.32 -0.56 2.57 16 7 C -0.10 -1.12 10.21 36.01 0.37 -0.75 16 8 C -0.30 -5.20 9.00 -39.11 -0.35 -5.55 16 9 C 0.45 9.32 7.36 -154.78 -1.14 8.18 16 10 N -0.57 -11.53 2.57 -175.03 -0.45 -11.98 16 11 C 0.22 5.25 4.27 -5.19 -0.02 5.23 16 12 C -0.51 -13.96 9.16 -34.44 -0.32 -14.28 16 13 H 0.08 2.39 6.98 -52.49 -0.37 2.02 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 16 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.14 2.22 5.02 -4.04 -0.02 2.20 16 21 C -0.12 -1.94 3.95 -89.71 -0.35 -2.29 16 22 C -0.13 -1.70 7.64 -25.92 -0.20 -1.90 16 23 C -0.15 -2.06 8.09 -25.91 -0.21 -2.27 16 24 C -0.12 -2.04 6.79 -25.82 -0.18 -2.22 16 25 N -0.54 -12.13 9.21 -9.97 -0.09 -12.22 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.14 1.93 6.29 -52.49 -0.33 1.60 16 35 H 0.04 1.05 6.54 -51.93 -0.34 0.71 16 36 H 0.02 0.47 7.28 -51.93 -0.38 0.09 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.06 0.87 6.37 -51.93 -0.33 0.54 16 39 H 0.08 1.24 7.52 -51.93 -0.39 0.85 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 46 H 0.08 1.76 7.14 -51.93 -0.37 1.39 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -33.07 373.39 -9.71 -42.78 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.57 Total: 2.51 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.88 Total: 1.11 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.16 Total: -61.21 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.38 Total: -7.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.07 -9.71 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084114442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.076 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds