Wall clock time and date at job start Fri Apr 10 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00249 * 2 1 4 4 C 1.50695 * 109.47549 * 179.97438 * 3 2 1 5 5 N 1.31786 * 119.08491 * 269.98186 * 4 3 2 6 6 C 1.32548 * 121.00684 * 180.02562 * 5 4 3 7 7 C 1.50706 * 120.39685 * 179.97438 * 6 5 4 8 8 C 1.38119 * 119.20422 * 359.73849 * 6 5 4 9 9 C 1.39624 * 118.32641 * 0.51589 * 8 6 5 10 10 N 1.38545 * 120.52635 * 179.75799 * 9 8 6 11 11 C 1.46498 * 119.99845 * 184.59052 * 10 9 8 12 12 C 1.50705 * 109.47137 * 270.00173 * 11 10 9 13 13 H 1.08000 * 119.99805 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99654 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99414 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00667 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47367 * 89.99791 * 16 14 12 18 18 H 1.48497 * 109.47402 * 210.00253 * 16 14 12 19 19 H 1.48505 * 109.46982 * 329.99960 * 16 14 12 20 20 C 1.46498 * 120.00100 * 4.59201 * 10 9 8 21 21 C 1.53000 * 109.47340 * 84.34107 * 20 10 9 22 22 C 1.53777 * 113.61593 * 185.66057 * 21 20 10 23 23 C 1.53789 * 87.17345 * 220.06235 * 22 21 20 24 24 C 1.53785 * 87.08013 * 25.39055 * 23 22 21 25 25 N 1.31756 * 119.07906 * 90.00033 * 4 3 2 26 26 H 1.09003 * 109.46592 * 60.00080 * 1 2 3 27 27 H 1.08999 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46962 * 299.99932 * 1 2 3 29 29 H 1.08999 * 109.46910 * 59.99122 * 3 2 1 30 30 H 1.09003 * 109.46594 * 300.00190 * 3 2 1 31 31 H 1.09010 * 109.46643 * 89.99761 * 7 6 5 32 32 H 1.08994 * 109.47423 * 209.99731 * 7 6 5 33 33 H 1.08996 * 109.47120 * 330.00033 * 7 6 5 34 34 H 1.07991 * 120.83417 * 180.25593 * 8 6 5 35 35 H 1.09001 * 109.47506 * 30.00477 * 11 10 9 36 36 H 1.08997 * 109.47328 * 150.00038 * 11 10 9 37 37 H 0.96999 * 120.00162 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47126 * 324.33732 * 20 10 9 39 39 H 1.09007 * 109.46879 * 204.34335 * 20 10 9 40 40 H 1.09002 * 112.90553 * 316.91623 * 21 20 10 41 41 H 1.09000 * 113.61242 * 105.47034 * 22 21 20 42 42 H 1.08997 * 113.61532 * 334.65213 * 22 21 20 43 43 H 1.08999 * 113.61568 * 139.93928 * 23 22 21 44 44 H 1.09000 * 113.60660 * 270.84479 * 23 22 21 45 45 H 1.08994 * 113.61444 * 89.11684 * 24 23 22 46 46 H 1.08998 * 113.61309 * 219.93523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.1507 1.1365 1.1526 6 6 5.4714 1.0325 1.1976 7 6 6.1872 0.9770 2.5226 8 6 6.1832 0.9706 0.0156 9 6 5.4767 1.0317 -1.1872 10 7 6.1452 0.9786 -2.3995 11 6 5.4044 1.1445 -3.6524 12 6 4.9339 -0.2017 -4.1399 13 1 5.1635 -1.0917 -3.5728 14 6 4.2105 -0.2969 -5.3097 15 7 3.8004 -1.4718 -5.7354 16 14 3.8128 1.2425 -6.2901 17 1 4.8966 1.4974 -7.2728 18 1 2.5273 1.0533 -7.0089 19 1 3.6984 2.4009 -5.3679 20 6 7.5930 0.7565 -2.4285 21 6 7.8804 -0.7445 -2.3550 22 6 9.3766 -1.0803 -2.2399 23 6 9.1115 -2.2455 -3.2081 24 6 7.9132 -1.4354 -3.7304 25 7 4.1514 1.1358 -1.1506 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 6.2790 -0.0610 2.8428 32 1 7.1801 1.4141 2.4178 33 1 5.6201 1.5376 3.2657 34 1 7.2594 0.8815 0.0215 35 1 4.5432 1.7907 -3.4825 36 1 6.0546 1.5955 -4.4020 37 1 3.2912 -1.5389 -6.5582 38 1 8.0545 1.2570 -1.5772 39 1 8.0040 1.1603 -3.3538 40 1 7.2595 -1.2599 -1.6222 41 1 9.6766 -1.4011 -1.2424 42 1 10.0297 -0.3108 -2.6513 43 1 9.8994 -2.3861 -3.9481 44 1 8.8279 -3.1720 -2.7088 45 1 8.1651 -0.7623 -4.5498 46 1 7.0324 -2.0431 -3.9375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084114442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:38 Heat of formation + Delta-G solvation = 11.700874 kcal Electronic energy + Delta-G solvation = -25943.054185 eV Core-core repulsion = 22447.160745 eV Total energy + Delta-G solvation = -3495.893441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95197 -39.98110 -38.79376 -37.60190 -35.00333 -34.75378 -32.86104 -30.92159 -29.71244 -28.73012 -28.04477 -26.75945 -26.34797 -24.54163 -24.16067 -22.76850 -21.59570 -20.23582 -19.00418 -18.66424 -17.98025 -17.55873 -16.73834 -16.60702 -16.48080 -16.30883 -15.96026 -15.75607 -15.46408 -15.29304 -14.52989 -14.40653 -13.95813 -13.86337 -13.61774 -13.45961 -13.31653 -13.24595 -13.20024 -13.01758 -12.90013 -12.54362 -12.42620 -12.23433 -12.08262 -11.80040 -11.55445 -11.40534 -11.36597 -11.10777 -10.94747 -10.73242 -10.72804 -10.45776 -10.01015 -8.64168 -8.23388 -6.23913 0.08502 0.54397 1.31037 1.35221 1.44901 2.05547 2.35033 2.55589 3.07488 3.10638 3.36062 3.51052 3.75778 3.76826 3.89003 3.95540 4.07475 4.13417 4.28440 4.35452 4.43647 4.46198 4.50154 4.53043 4.57830 4.63558 4.68935 4.81202 4.83990 4.86117 4.91940 4.93996 4.97046 5.00104 5.02798 5.12987 5.13601 5.35227 5.43264 5.53068 5.60171 5.66598 5.91447 6.12788 6.23924 6.51469 6.66659 6.77782 7.35865 7.48017 8.93580 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.006785 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.305333 B = 4125.491890 C = 6360.835901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.140 3.860 4 C 0.337 3.663 5 N -0.570 5.570 6 C 0.183 3.817 7 C -0.092 4.092 8 C -0.295 4.295 9 C 0.424 3.576 10 N -0.578 5.578 11 C 0.236 3.764 12 C -0.498 4.498 13 H 0.030 0.970 14 C 0.011 3.989 15 N -0.949 5.949 16 Si 0.937 3.063 17 H -0.260 1.260 18 H -0.288 1.288 19 H -0.254 1.254 20 C 0.134 3.866 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.140 4.140 24 C -0.129 4.129 25 N -0.588 5.588 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.024 0.976 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.958 7.469 13.400 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C 0.062 3.938 4 C 0.066 3.934 5 N -0.293 5.293 6 C 0.041 3.959 7 C -0.149 4.149 8 C -0.323 4.323 9 C 0.182 3.818 10 N -0.286 5.286 11 C 0.113 3.887 12 C -0.537 4.537 13 H 0.048 0.952 14 C -0.186 4.186 15 N -0.591 5.591 16 Si 0.761 3.239 17 H -0.184 1.184 18 H -0.214 1.214 19 H -0.178 1.178 20 C 0.012 3.988 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.177 4.177 24 C -0.167 4.167 25 N -0.314 5.314 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.186 0.814 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.149 7.305 13.039 16.568 hybrid contribution -0.416 -0.081 -1.312 1.379 sum 6.733 7.224 11.727 15.331 Atomic orbital electron populations 1.22967 0.78383 1.03939 1.01390 1.87910 1.22433 1.27451 1.95684 1.20967 0.84673 0.85598 1.02562 1.22690 0.97041 0.90498 0.83147 1.68043 1.10627 1.21547 1.29072 1.22070 0.88898 0.87856 0.97071 1.20795 1.00109 1.04244 0.89756 1.22209 1.03146 1.15696 0.91286 1.18928 0.88033 0.87277 0.87598 1.46758 1.07641 1.71658 1.02542 1.19342 0.91956 0.95571 0.81816 1.21391 1.32879 0.92974 1.06414 0.95158 1.25695 0.95449 0.98759 0.98695 1.70068 1.39694 1.25704 1.23616 0.85870 0.78208 0.80539 0.79247 1.18446 1.21370 1.17837 1.21797 0.77743 0.95363 1.03894 1.22883 0.98117 0.95724 0.97400 1.22815 0.93536 0.97891 1.00209 1.22818 0.97708 0.97550 0.99635 1.22840 0.97552 0.99251 0.97042 1.67817 1.09470 1.22633 1.31479 0.93441 0.88800 0.91337 0.88362 0.91221 0.89105 0.87755 0.89731 0.81431 0.95770 0.94453 0.92890 0.88029 0.89195 0.92485 0.89830 0.87802 0.90267 0.91274 0.90749 0.96015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.42 -15.68 10.69 -148.98 -1.59 -17.27 16 3 C 0.14 4.88 6.37 71.23 0.45 5.33 16 4 C 0.34 13.77 7.27 138.76 1.01 14.78 16 5 N -0.57 -20.82 10.27 -176.28 -1.81 -22.63 16 6 C 0.18 5.65 6.82 42.42 0.29 5.94 16 7 C -0.09 -1.75 10.21 71.24 0.73 -1.02 16 8 C -0.30 -9.55 9.00 22.58 0.20 -9.35 16 9 C 0.42 17.59 7.36 133.16 0.98 18.57 16 10 N -0.58 -23.59 2.57 -707.67 -1.82 -25.40 16 11 C 0.24 11.32 4.27 85.63 0.37 11.69 16 12 C -0.50 -28.71 9.16 25.60 0.23 -28.47 16 13 H 0.03 2.00 6.98 -2.91 -0.02 1.98 16 14 C 0.01 0.63 5.47 84.65 0.46 1.10 16 15 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 20 C 0.13 4.07 5.02 86.38 0.43 4.50 16 21 C -0.12 -3.83 3.95 -10.21 -0.04 -3.87 16 22 C -0.11 -2.33 7.64 31.12 0.24 -2.09 16 23 C -0.14 -3.77 8.09 31.12 0.25 -3.52 16 24 C -0.13 -4.73 6.79 31.18 0.21 -4.52 16 25 N -0.59 -27.20 9.21 -185.44 -1.71 -28.91 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.17 4.13 6.29 -2.92 -0.02 4.11 16 35 H 0.02 1.25 6.54 -2.39 -0.02 1.24 16 36 H 0.04 1.67 7.28 -2.39 -0.02 1.65 16 37 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.10 2.33 6.37 -2.39 -0.02 2.31 16 39 H 0.09 2.55 7.52 -2.38 -0.02 2.54 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.79 8.10 -2.39 -0.02 1.78 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.69 7.89 -2.39 -0.02 2.67 16 46 H 0.02 1.01 7.14 -2.39 -0.02 1.00 16 Total: -1.00 -79.13 373.39 3.23 -75.91 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.90 Total: 20.94 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 7.07 Total: 11.07 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -5.04 Total: -137.32 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.59 Total: -17.27 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -79.13 3.23 -75.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084114442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.608 kcal (2) G-P(sol) polarization free energy of solvation -79.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds