Wall clock time and date at job start Fri Apr 10 2020 17:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00151 * 2 1 4 4 C 1.38762 * 120.05292 * 359.73213 * 3 2 1 5 5 C 1.38120 * 119.93956 * 179.69681 * 4 3 2 6 6 C 1.38287 * 120.05997 * 0.59852 * 5 4 3 7 7 C 1.38241 * 120.11033 * 359.67455 * 6 5 4 8 8 C 1.50700 * 119.97389 * 180.02562 * 7 6 5 9 9 N 1.46893 * 109.47152 * 269.98293 * 8 7 6 10 10 C 1.46900 * 110.99905 * 170.00060 * 9 8 7 11 11 C 1.50694 * 109.47123 * 284.39187 * 10 9 8 12 12 H 1.08005 * 119.99661 * 4.68383 * 11 10 9 13 13 C 1.37877 * 120.00529 * 184.68115 * 11 10 9 14 14 N 1.31521 * 119.99492 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00404 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47097 * 59.99660 * 15 13 11 17 17 H 1.48504 * 109.46994 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47018 * 299.99728 * 15 13 11 19 19 C 1.46905 * 110.99898 * 293.94932 * 9 8 7 20 20 C 1.53171 * 109.54578 * 288.99467 * 19 9 8 21 21 C 1.53098 * 109.16479 * 183.15369 * 20 19 9 22 22 O 1.42905 * 109.41481 * 57.60579 * 21 20 19 23 23 C 1.42901 * 114.09905 * 298.84177 * 22 21 20 24 24 C 1.53097 * 109.41153 * 61.16023 * 23 22 21 25 25 C 1.38168 * 120.05579 * 0.02865 * 7 6 5 26 26 H 1.09003 * 109.46614 * 299.99581 * 1 2 3 27 27 H 1.08996 * 109.47132 * 59.99409 * 1 2 3 28 28 H 1.09004 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.02808 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.96789 * 180.29469 * 5 4 3 31 31 H 1.07997 * 119.94431 * 179.70254 * 6 5 4 32 32 H 1.08998 * 109.46660 * 29.98006 * 8 7 6 33 33 H 1.09003 * 109.46913 * 149.97755 * 8 7 6 34 34 H 1.08999 * 109.47540 * 44.39786 * 10 9 8 35 35 H 1.09007 * 109.47195 * 164.39461 * 10 9 8 36 36 H 0.97002 * 119.99790 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.54212 * 49.26330 * 19 9 8 38 38 H 1.09003 * 109.52581 * 303.05569 * 20 19 9 39 39 H 1.08999 * 109.52641 * 63.24299 * 20 19 9 40 40 H 1.09001 * 109.47677 * 297.62741 * 21 20 19 41 41 H 1.08998 * 109.48158 * 177.58827 * 21 20 19 42 42 H 1.09005 * 109.48202 * 301.18159 * 23 22 21 43 43 H 1.09000 * 109.49061 * 181.14739 * 23 22 21 44 44 H 1.09002 * 109.52307 * 182.48463 * 24 23 22 45 45 H 1.08998 * 109.52415 * 62.29997 * 24 23 22 46 46 H 1.07997 * 120.03169 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9209 3.6047 0.0007 6 6 3.3019 3.6758 0.0002 7 6 4.0560 2.5172 0.0000 8 6 5.5608 2.5983 0.0000 9 7 6.0497 2.6243 -1.3849 10 6 7.4836 2.9400 -1.4311 11 6 7.6825 4.4116 -1.1745 12 1 6.8375 5.0344 -0.9204 13 6 8.9431 4.9629 -1.2639 14 7 9.9721 4.2043 -1.5728 15 14 9.1897 6.7869 -0.9451 16 1 8.7535 7.1112 0.4368 17 1 10.6266 7.1272 -1.1030 18 1 8.3851 7.5722 -1.9152 19 6 5.7682 1.3538 -2.0665 20 6 6.6721 0.2558 -1.4977 21 6 6.4278 -1.0451 -2.2670 22 8 6.6751 -0.8281 -3.6577 23 6 5.8267 0.1546 -4.2548 24 6 6.0469 1.5037 -3.5653 25 6 3.4311 1.2849 -0.0001 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.2128 2.3204 -0.0104 30 1 1.3339 4.5113 0.0012 31 1 3.7921 4.6381 0.0003 32 1 5.8756 3.5067 0.5136 33 1 5.9714 1.7293 0.5141 34 1 8.0073 2.3641 -0.6681 35 1 7.8802 2.6858 -2.4141 36 1 10.8590 4.5921 -1.6354 37 1 4.7234 1.0826 -1.9153 38 1 7.7158 0.5515 -1.6044 39 1 6.4416 0.1042 -0.4432 40 1 5.3943 -1.3617 -2.1267 41 1 7.0991 -1.8190 -1.8949 42 1 4.7853 -0.1464 -4.1404 43 1 6.0647 0.2449 -5.3147 44 1 5.3692 2.2445 -3.9895 45 1 7.0779 1.8246 -3.7139 46 1 4.0206 0.3800 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095972569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:58 Heat of formation + Delta-G solvation = -73.981765 kcal Electronic energy + Delta-G solvation = -26102.014853 eV Core-core repulsion = 22570.113183 eV Total energy + Delta-G solvation = -3531.901670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31370 -40.55703 -38.80534 -37.56435 -34.81519 -33.34338 -32.09347 -32.01497 -31.13223 -28.89604 -28.04777 -26.72452 -25.06461 -24.52579 -23.49622 -23.16316 -21.82964 -20.32590 -18.74432 -18.38329 -17.40791 -17.02500 -17.00411 -16.84398 -16.72428 -16.55023 -16.10187 -15.75186 -15.47283 -15.30864 -14.77591 -14.50399 -14.44288 -14.14482 -14.05389 -13.56982 -13.36710 -13.15871 -12.87645 -12.82905 -12.74187 -12.60212 -12.40146 -12.21708 -12.08571 -11.89387 -11.83005 -11.80537 -11.55376 -11.29274 -11.06878 -10.56165 -10.54857 -9.77573 -9.09603 -8.93149 -8.16354 -6.26213 0.38002 0.54531 1.41049 1.43890 1.51608 2.39882 2.41680 2.77924 2.96023 3.15036 3.40995 3.78894 3.86636 3.91242 3.92257 4.04884 4.16716 4.26969 4.29322 4.32299 4.41711 4.44585 4.47726 4.51676 4.58898 4.62565 4.64931 4.75041 4.77123 4.81556 4.84458 4.90072 5.06840 5.10567 5.15803 5.23711 5.31269 5.36220 5.41832 5.53419 5.68180 5.79694 5.84764 6.11462 6.25572 6.39522 6.51418 6.64924 6.89120 7.42806 8.93440 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.005077 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.036475 B = 5514.092736 C = 7355.348587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.151 4.151 7 C -0.036 4.036 8 C 0.100 3.900 9 N -0.525 5.525 10 C 0.214 3.786 11 C -0.520 4.520 12 H 0.061 0.939 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.269 1.269 19 C 0.082 3.918 20 C -0.184 4.184 21 C 0.071 3.929 22 O -0.403 6.403 23 C 0.068 3.932 24 C -0.144 4.144 25 C -0.160 4.160 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.031 0.969 34 H -0.039 1.039 35 H 0.012 0.988 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -8.221 1.719 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.073 3.927 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.170 4.170 7 C -0.037 4.037 8 C -0.027 4.027 9 N -0.247 5.247 10 C 0.088 3.912 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.026 4.026 20 C -0.224 4.224 21 C -0.006 4.006 22 O -0.322 6.322 23 C -0.008 4.008 24 C -0.182 4.182 25 C -0.180 4.180 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.049 0.951 34 H -0.021 1.021 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.869 -8.118 1.344 21.505 hybrid contribution 1.095 0.695 0.781 1.514 sum -18.774 -7.423 2.125 20.299 Atomic orbital electron populations 1.23338 0.76445 1.05475 1.02303 1.86040 1.23490 1.26701 1.88811 1.19013 0.91854 0.85016 0.96774 1.21470 1.01083 0.91607 1.08573 1.21199 0.93697 0.98265 0.96386 1.21095 0.94570 0.97939 1.03351 1.19579 0.94536 0.92937 0.96621 1.20895 0.90681 1.00701 0.90435 1.62259 1.18101 1.30105 1.14234 1.19348 0.82713 0.94765 0.94356 1.21468 0.93305 0.94728 1.46338 0.92102 1.25853 0.95658 1.02775 0.95169 1.70090 0.99883 1.37586 1.49947 0.85509 0.76873 0.79622 0.79049 1.19264 1.21076 1.19413 1.21827 0.98980 0.87884 0.93954 1.22815 1.00635 0.98129 1.00783 1.22568 1.01793 0.95671 0.80559 1.87870 1.61285 1.59370 1.23684 1.22665 0.94471 0.85999 0.97710 1.22219 1.01747 0.98861 0.95408 1.20275 0.92117 0.97576 1.07991 0.91615 0.91700 0.86448 0.82813 0.83223 0.86410 0.91136 0.95059 1.02107 0.96988 0.92868 0.89138 0.93793 0.90989 0.91332 0.87981 0.91330 0.87473 0.90454 0.93769 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.60 10.50 -92.44 -0.97 -8.57 16 3 C 0.12 3.02 6.69 22.51 0.15 3.17 16 4 C -0.21 -4.50 9.04 22.37 0.20 -4.30 16 5 C -0.08 -1.81 10.04 22.25 0.22 -1.59 16 6 C -0.15 -4.53 9.70 22.28 0.22 -4.31 16 7 C -0.04 -1.18 4.91 -19.88 -0.10 -1.28 16 8 C 0.10 3.93 4.83 85.56 0.41 4.34 16 9 N -0.52 -22.70 4.36 -879.38 -3.84 -26.54 16 10 C 0.21 11.42 3.31 85.56 0.28 11.70 16 11 C -0.52 -29.62 8.61 25.60 0.22 -29.40 16 12 H 0.06 3.39 7.65 -2.91 -0.02 3.37 16 13 C 0.00 0.19 5.46 84.65 0.46 0.65 16 14 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 15 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 C 0.08 3.02 2.07 45.03 0.09 3.11 16 20 C -0.18 -6.53 4.77 30.68 0.15 -6.38 16 21 C 0.07 2.06 6.84 72.01 0.49 2.55 16 22 O -0.40 -13.13 10.77 -148.98 -1.60 -14.73 16 23 C 0.07 1.97 6.84 72.01 0.49 2.46 16 24 C -0.14 -5.20 5.46 30.69 0.17 -5.03 16 25 C -0.16 -4.73 7.79 22.37 0.17 -4.56 16 26 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 27 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 28 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.07 3.02 7.26 -2.39 -0.02 3.00 16 33 H 0.03 1.21 6.46 -2.39 -0.02 1.20 16 34 H -0.04 -2.25 7.26 -2.39 -0.02 -2.27 16 35 H 0.01 0.71 5.85 -2.38 -0.01 0.70 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.09 3.06 5.43 -2.39 -0.01 3.05 16 38 H 0.04 1.90 6.58 -2.39 -0.02 1.88 16 39 H 0.07 2.41 6.76 -2.39 -0.02 2.40 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.65 16 43 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.04 1.92 6.18 -2.39 -0.01 1.91 16 46 H 0.12 3.54 7.85 -2.91 -0.02 3.51 16 Total: -1.00 -68.66 358.13 1.62 -67.04 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.96 Total: 20.26 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 4.75 Total: -27.52 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -3.55 Total: -83.27 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -2.57 Total: -23.31 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.66 1.62 -67.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095972569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.942 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds