Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46939 * 2 1 4 4 N 1.46502 * 109.46959 * 119.99623 * 2 1 3 5 5 C 1.36941 * 120.00075 * 353.66225 * 4 2 1 6 6 H 1.08002 * 119.99373 * 127.73691 * 5 4 2 7 7 C 1.38809 * 120.00184 * 307.74128 * 5 4 2 8 8 N 1.31621 * 120.00040 * 343.46894 * 7 5 4 9 9 Si 1.86796 * 120.00232 * 163.47090 * 7 5 4 10 10 H 1.48507 * 109.47069 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47346 * 119.99741 * 9 7 5 12 12 H 1.48501 * 109.46976 * 239.99863 * 9 7 5 13 13 C 1.46501 * 120.00059 * 173.66443 * 4 2 1 14 14 C 1.50695 * 109.47030 * 268.31436 * 13 4 2 15 15 C 1.35320 * 126.04075 * 350.58752 * 14 13 4 16 16 N 1.34947 * 107.74933 * 179.97438 * 15 14 13 17 17 C 1.46498 * 126.03904 * 179.97438 * 16 15 14 18 18 N 1.40080 * 107.92170 * 0.24907 * 16 15 14 19 19 C 1.30835 * 108.21121 * 359.58497 * 18 16 15 20 20 C 1.50699 * 125.90486 * 180.15041 * 19 18 16 21 21 C 1.52998 * 109.47138 * 65.48836 * 20 19 18 22 22 C 1.52999 * 109.47184 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47273 * 60.00190 * 22 21 20 24 24 C 1.53008 * 109.47217 * 300.00125 * 23 22 21 25 25 C 1.52996 * 109.46887 * 305.49163 * 20 19 18 26 26 H 1.08994 * 109.47054 * 317.45636 * 1 2 3 27 27 H 1.08998 * 109.46553 * 77.46092 * 1 2 3 28 28 H 1.09005 * 109.46714 * 197.45446 * 1 2 3 29 29 H 1.08995 * 109.47401 * 239.99792 * 2 1 3 30 30 H 1.08997 * 109.47336 * 167.80905 * 3 2 1 31 31 H 1.09002 * 109.47244 * 287.81568 * 3 2 1 32 32 H 1.09006 * 109.47268 * 47.81185 * 3 2 1 33 33 H 0.96995 * 120.00152 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47392 * 148.31145 * 13 4 2 35 35 H 1.08999 * 109.47101 * 28.30879 * 13 4 2 36 36 H 1.08007 * 126.12677 * 359.97438 * 15 14 13 37 37 H 1.09005 * 109.46535 * 90.01196 * 17 16 15 38 38 H 1.08993 * 109.47482 * 210.00236 * 17 16 15 39 39 H 1.08997 * 109.47351 * 330.01289 * 17 16 15 40 40 H 1.09003 * 109.47431 * 185.49087 * 20 19 18 41 41 H 1.08998 * 109.47334 * 299.99958 * 21 20 19 42 42 H 1.08998 * 109.46875 * 60.00230 * 21 20 19 43 43 H 1.09003 * 109.47340 * 300.00223 * 22 21 20 44 44 H 1.09003 * 109.47294 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.47525 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.46910 * 59.99770 * 23 22 21 47 47 H 1.08998 * 109.47060 * 300.00112 * 24 23 22 48 48 H 1.08995 * 109.47378 * 179.97438 * 24 23 22 49 49 H 1.09002 * 109.47599 * 299.99616 * 25 20 19 50 50 H 1.08994 * 109.47722 * 59.99729 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.1353 -1.0963 2.1610 6 1 1.1436 -2.1203 2.5043 7 6 0.2295 -0.1917 2.6976 8 7 0.4169 1.1012 2.5368 9 14 -1.2554 -0.8090 3.6481 10 1 -1.2368 -2.2934 3.6858 11 1 -1.2119 -0.2776 5.0341 12 1 -2.4982 -0.3467 2.9795 13 6 3.4514 -0.9470 1.3604 14 6 3.7874 -2.3019 0.7929 15 6 2.8985 -3.2352 0.3807 16 7 3.5971 -4.3029 -0.0588 17 6 3.0299 -5.5429 -0.5944 18 7 4.9602 -4.0186 0.0936 19 6 5.0733 -2.8171 0.5988 20 6 6.3655 -2.1122 0.9219 21 6 7.1368 -1.8429 -0.3718 22 6 8.4490 -1.1279 -0.0438 23 6 9.2932 -2.0091 0.8792 24 6 8.5219 -2.2784 2.1729 25 6 7.2098 -2.9929 1.8450 26 1 -0.3633 0.7571 0.6948 27 1 -0.3632 0.2231 -1.0032 28 1 -0.3633 -0.9804 0.3083 29 1 1.8934 -0.5138 -0.8899 30 1 3.1081 1.4503 0.2170 31 1 1.8647 1.8899 -0.9784 32 1 1.5104 2.0151 0.7615 33 1 -0.2158 1.7333 2.9120 34 1 3.7057 -0.9235 2.4200 35 1 4.0202 -0.1811 0.8332 36 1 1.8226 -3.1423 0.3999 37 1 2.9068 -5.4496 -1.6735 38 1 3.7009 -6.3735 -0.3759 39 1 2.0600 -5.7280 -0.1328 40 1 6.1493 -1.1668 1.4194 41 1 7.3531 -2.7883 -0.8693 42 1 6.5353 -1.2155 -1.0295 43 1 8.2332 -0.1825 0.4540 44 1 8.9988 -0.9365 -0.9654 45 1 10.2278 -1.4995 1.1132 46 1 9.5091 -2.9545 0.3814 47 1 8.3060 -1.3331 2.6707 48 1 9.1231 -2.9065 2.8303 49 1 6.6605 -3.1848 2.7667 50 1 7.4262 -3.9383 1.3476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097108431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = 74.867944 kcal Electronic energy + Delta-G solvation = -26645.290096 eV Core-core repulsion = 23287.968880 eV Total energy + Delta-G solvation = -3357.321216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.71278 -38.14745 -36.50685 -33.44399 -31.76153 -31.21250 -30.61608 -30.32571 -28.57102 -26.86944 -25.84617 -24.38845 -22.81158 -22.49189 -22.40529 -20.29980 -19.50964 -18.94126 -18.65029 -16.54665 -15.85893 -15.25560 -14.97975 -14.77176 -14.18962 -14.08306 -14.01894 -13.79350 -13.57967 -13.09580 -13.01481 -12.83317 -12.48804 -12.08957 -12.07850 -11.97858 -11.68788 -11.46997 -11.21458 -11.11339 -11.05686 -10.98816 -10.93166 -10.74432 -10.52782 -10.38743 -10.24406 -10.15081 -10.03092 -9.93735 -9.79501 -9.64367 -9.30668 -8.57773 -8.04451 -7.47114 -6.29813 -5.73946 -3.48617 2.52764 3.05411 3.31880 3.41879 3.43364 3.48183 4.45836 4.76955 4.82950 4.92331 4.98142 5.25890 5.32852 5.35736 5.42080 5.43147 5.52003 5.56086 5.63729 5.64620 5.69486 5.76808 5.83372 5.91316 6.11021 6.12527 6.24156 6.30862 6.31766 6.39257 6.44100 6.51263 6.54398 6.60843 6.64457 6.73477 6.77313 6.82362 6.85906 7.12457 7.19601 7.23405 7.35184 7.45638 7.71529 7.79377 7.85229 8.05211 8.36139 8.67328 9.31775 9.83297 10.55015 11.21223 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.004410 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.054673 B = 6347.513729 C = 6927.478562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.196 3.804 3 C -0.162 4.162 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.050 0.950 7 C 0.037 3.963 8 N -0.873 5.873 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.287 1.287 13 C 0.221 3.779 14 C -0.231 4.231 15 C 0.073 3.927 16 N -0.393 5.393 17 C 0.111 3.889 18 N -0.311 5.311 19 C 0.076 3.924 20 C 0.000 4.000 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.107 4.107 26 H 0.089 0.911 27 H 0.011 0.989 28 H 0.051 0.949 29 H 0.005 0.995 30 H 0.031 0.969 31 H 0.017 0.983 32 H 0.088 0.912 33 H 0.253 0.747 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -6.701 -5.055 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.090 3.910 3 C -0.221 4.221 4 N -0.301 5.301 5 C -0.393 4.393 6 H 0.068 0.932 7 C -0.165 4.165 8 N -0.513 5.513 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.213 1.213 13 C 0.093 3.907 14 C -0.244 4.244 15 C -0.071 4.071 16 N -0.177 5.177 17 C -0.032 4.032 18 N -0.133 5.133 19 C -0.091 4.091 20 C -0.020 4.020 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.145 4.145 26 H 0.107 0.893 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.192 0.808 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.151 -7.711 -5.480 14.623 hybrid contribution -1.510 0.331 0.706 1.699 sum 9.641 -7.380 -4.775 13.047 Atomic orbital electron populations 1.22163 0.96208 1.03829 0.98303 1.20001 0.93260 0.90558 0.87178 1.22374 1.00159 1.00015 0.99506 1.43741 1.00133 1.67588 1.18638 1.18771 1.12508 0.92697 1.15367 0.93220 1.25490 0.99992 0.95055 0.95940 1.69992 1.35294 1.00321 1.45697 0.86556 0.83586 0.78855 0.79730 1.20057 1.21528 1.21292 1.19062 0.86615 0.87987 0.97006 1.21362 0.90555 1.01760 1.10694 1.22412 0.99146 0.86816 0.98687 1.48277 1.04261 1.13975 1.51137 1.21636 0.98685 0.84019 0.98826 1.77030 0.94460 1.17049 1.24780 1.22024 0.95383 0.92471 0.99200 1.19540 0.88782 0.97658 0.96032 1.21516 0.95464 1.00681 0.96800 1.21543 0.96032 0.98874 0.99185 1.21537 0.97980 0.99834 0.96254 1.21542 0.96324 1.00699 0.97114 1.21505 0.95098 0.98599 0.99273 0.89252 0.96979 0.92987 0.97737 0.94998 0.96408 0.89295 0.93714 0.92967 0.94223 0.80825 0.91711 0.90228 0.90040 0.89501 0.91852 0.91957 0.91784 0.92271 0.92439 0.92226 0.91810 0.92287 0.92012 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 7.82 37.16 0.29 -3.06 16 2 C 0.20 4.45 3.25 -67.93 -0.22 4.23 16 3 C -0.16 -3.57 9.27 37.16 0.34 -3.22 16 4 N -0.58 -13.65 1.74 -167.03 -0.29 -13.94 16 5 C -0.26 -6.72 7.46 -15.06 -0.11 -6.83 16 6 H 0.05 1.31 7.88 -52.49 -0.41 0.90 16 7 C 0.04 0.95 3.43 -17.43 -0.06 0.89 16 8 N -0.87 -23.23 9.26 55.49 0.51 -22.71 16 9 Si 0.88 20.44 29.58 -169.99 -5.03 15.41 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.22 4.76 5.42 -5.20 -0.03 4.74 16 14 C -0.23 -4.59 6.05 -105.05 -0.64 -5.22 16 15 C 0.07 1.40 10.64 -17.22 -0.18 1.22 16 16 N -0.39 -6.76 4.01 -68.16 -0.27 -7.03 16 17 C 0.11 1.34 11.47 59.85 0.69 2.02 16 18 N -0.31 -5.64 12.54 33.67 0.42 -5.22 16 19 C 0.08 1.36 5.75 -82.41 -0.47 0.89 16 20 C 0.00 0.00 2.57 -91.78 -0.24 -0.23 16 21 C -0.11 -1.41 5.19 -26.73 -0.14 -1.55 16 22 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 23 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 24 C -0.12 -1.30 5.92 -26.75 -0.16 -1.46 16 25 C -0.11 -1.42 5.15 -26.76 -0.14 -1.56 16 26 H 0.09 2.22 4.99 -51.93 -0.26 1.96 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 29 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.03 0.68 6.64 -51.93 -0.34 0.34 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 2.18 6.06 -51.93 -0.31 1.86 16 33 H 0.25 6.56 8.31 -40.82 -0.34 6.23 16 34 H 0.05 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.04 0.84 6.66 -51.93 -0.35 0.49 16 36 H 0.17 3.43 7.46 -52.48 -0.39 3.04 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.31 7.52 -51.93 -0.39 0.92 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -28.01 380.51 -9.44 -37.45 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -9.14 Total: 2.26 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.38 Total: -11.95 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.37 Total: -48.91 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.01 -9.44 -37.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097108431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.320 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds