Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46939 * 2 1 4 4 N 1.46502 * 109.46959 * 119.99623 * 2 1 3 5 5 C 1.36941 * 120.00075 * 353.66225 * 4 2 1 6 6 H 1.08002 * 119.99373 * 127.73691 * 5 4 2 7 7 C 1.38809 * 120.00184 * 307.74128 * 5 4 2 8 8 N 1.31621 * 120.00040 * 343.46894 * 7 5 4 9 9 Si 1.86796 * 120.00232 * 163.47090 * 7 5 4 10 10 H 1.48507 * 109.47069 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47346 * 119.99741 * 9 7 5 12 12 H 1.48501 * 109.46976 * 239.99863 * 9 7 5 13 13 C 1.46501 * 120.00059 * 173.66443 * 4 2 1 14 14 C 1.50695 * 109.47030 * 268.31436 * 13 4 2 15 15 C 1.35320 * 126.04075 * 350.58752 * 14 13 4 16 16 N 1.34947 * 107.74933 * 179.97438 * 15 14 13 17 17 C 1.46498 * 126.03904 * 179.97438 * 16 15 14 18 18 N 1.40080 * 107.92170 * 0.24907 * 16 15 14 19 19 C 1.30835 * 108.21121 * 359.58497 * 18 16 15 20 20 C 1.50699 * 125.90486 * 180.15041 * 19 18 16 21 21 C 1.52998 * 109.47138 * 65.48836 * 20 19 18 22 22 C 1.52999 * 109.47184 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47273 * 60.00190 * 22 21 20 24 24 C 1.53008 * 109.47217 * 300.00125 * 23 22 21 25 25 C 1.52996 * 109.46887 * 305.49163 * 20 19 18 26 26 H 1.08994 * 109.47054 * 317.45636 * 1 2 3 27 27 H 1.08998 * 109.46553 * 77.46092 * 1 2 3 28 28 H 1.09005 * 109.46714 * 197.45446 * 1 2 3 29 29 H 1.08995 * 109.47401 * 239.99792 * 2 1 3 30 30 H 1.08997 * 109.47336 * 167.80905 * 3 2 1 31 31 H 1.09002 * 109.47244 * 287.81568 * 3 2 1 32 32 H 1.09006 * 109.47268 * 47.81185 * 3 2 1 33 33 H 0.96995 * 120.00152 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47392 * 148.31145 * 13 4 2 35 35 H 1.08999 * 109.47101 * 28.30879 * 13 4 2 36 36 H 1.08007 * 126.12677 * 359.97438 * 15 14 13 37 37 H 1.09005 * 109.46535 * 90.01196 * 17 16 15 38 38 H 1.08993 * 109.47482 * 210.00236 * 17 16 15 39 39 H 1.08997 * 109.47351 * 330.01289 * 17 16 15 40 40 H 1.09003 * 109.47431 * 185.49087 * 20 19 18 41 41 H 1.08998 * 109.47334 * 299.99958 * 21 20 19 42 42 H 1.08998 * 109.46875 * 60.00230 * 21 20 19 43 43 H 1.09003 * 109.47340 * 300.00223 * 22 21 20 44 44 H 1.09003 * 109.47294 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.47525 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.46910 * 59.99770 * 23 22 21 47 47 H 1.08998 * 109.47060 * 300.00112 * 24 23 22 48 48 H 1.08995 * 109.47378 * 179.97438 * 24 23 22 49 49 H 1.09002 * 109.47599 * 299.99616 * 25 20 19 50 50 H 1.08994 * 109.47722 * 59.99729 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.1353 -1.0963 2.1610 6 1 1.1436 -2.1203 2.5043 7 6 0.2295 -0.1917 2.6976 8 7 0.4169 1.1012 2.5368 9 14 -1.2554 -0.8090 3.6481 10 1 -1.2368 -2.2934 3.6858 11 1 -1.2119 -0.2776 5.0341 12 1 -2.4982 -0.3467 2.9795 13 6 3.4514 -0.9470 1.3604 14 6 3.7874 -2.3019 0.7929 15 6 2.8985 -3.2352 0.3807 16 7 3.5971 -4.3029 -0.0588 17 6 3.0299 -5.5429 -0.5944 18 7 4.9602 -4.0186 0.0936 19 6 5.0733 -2.8171 0.5988 20 6 6.3655 -2.1122 0.9219 21 6 7.1368 -1.8429 -0.3718 22 6 8.4490 -1.1279 -0.0438 23 6 9.2932 -2.0091 0.8792 24 6 8.5219 -2.2784 2.1729 25 6 7.2098 -2.9929 1.8450 26 1 -0.3633 0.7571 0.6948 27 1 -0.3632 0.2231 -1.0032 28 1 -0.3633 -0.9804 0.3083 29 1 1.8934 -0.5138 -0.8899 30 1 3.1081 1.4503 0.2170 31 1 1.8647 1.8899 -0.9784 32 1 1.5104 2.0151 0.7615 33 1 -0.2158 1.7333 2.9120 34 1 3.7057 -0.9235 2.4200 35 1 4.0202 -0.1811 0.8332 36 1 1.8226 -3.1423 0.3999 37 1 2.9068 -5.4496 -1.6735 38 1 3.7009 -6.3735 -0.3759 39 1 2.0600 -5.7280 -0.1328 40 1 6.1493 -1.1668 1.4194 41 1 7.3531 -2.7883 -0.8693 42 1 6.5353 -1.2155 -1.0295 43 1 8.2332 -0.1825 0.4540 44 1 8.9988 -0.9365 -0.9654 45 1 10.2278 -1.4995 1.1132 46 1 9.5091 -2.9545 0.3814 47 1 8.3060 -1.3331 2.6707 48 1 9.1231 -2.9065 2.8303 49 1 6.6605 -3.1848 2.7667 50 1 7.4262 -3.9383 1.3476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097108431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = 63.262972 kcal Electronic energy + Delta-G solvation = -26645.793325 eV Core-core repulsion = 23287.968880 eV Total energy + Delta-G solvation = -3357.824446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11807 -39.17745 -38.34272 -34.71942 -33.57416 -32.94089 -31.58763 -31.44267 -30.21412 -28.45308 -27.40760 -26.08780 -24.49797 -23.65780 -23.37942 -21.69736 -21.02515 -20.43163 -19.91596 -18.31566 -17.36506 -16.67025 -16.29655 -16.26308 -15.91845 -15.41190 -15.07060 -15.00482 -14.99897 -14.69057 -14.34755 -13.99332 -13.88785 -13.55685 -13.31282 -13.10239 -13.05605 -13.01007 -12.89172 -12.80920 -12.74699 -12.49134 -12.36203 -12.10760 -12.02150 -11.96121 -11.80042 -11.62290 -11.47391 -11.29555 -11.15756 -11.01728 -10.91463 -10.01497 -9.93566 -8.96977 -8.23680 -7.67940 -5.48369 1.09831 1.45749 1.51923 1.58260 1.80944 1.98786 2.54120 3.33279 3.63044 3.66632 3.85249 3.96359 4.01141 4.23432 4.39961 4.41384 4.43601 4.45467 4.60124 4.62169 4.65698 4.67794 4.70464 4.71326 4.78815 4.86486 4.89655 4.95246 5.00748 5.07028 5.08318 5.12628 5.19700 5.31037 5.32465 5.32524 5.36177 5.39785 5.42741 5.49231 5.54166 5.62322 5.65906 5.81808 5.92929 5.96756 6.16399 6.32225 6.67036 6.93868 7.37217 7.93996 8.60908 9.22124 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.004410 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.054673 B = 6347.513729 C = 6927.478562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.193 3.807 3 C -0.152 4.152 4 N -0.586 5.586 5 C -0.267 4.267 6 H 0.038 0.962 7 C 0.005 3.995 8 N -0.892 5.892 9 Si 0.935 3.065 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.285 1.285 13 C 0.231 3.769 14 C -0.255 4.255 15 C 0.070 3.930 16 N -0.390 5.390 17 C 0.100 3.900 18 N -0.319 5.319 19 C 0.075 3.925 20 C -0.001 4.001 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.100 4.100 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.009 0.991 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.250 0.750 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.167 0.833 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -7.509 -5.845 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.088 3.912 3 C -0.211 4.211 4 N -0.309 5.309 5 C -0.397 4.397 6 H 0.056 0.944 7 C -0.195 4.195 8 N -0.533 5.533 9 Si 0.763 3.237 10 H -0.198 1.198 11 H -0.221 1.221 12 H -0.212 1.212 13 C 0.104 3.896 14 C -0.269 4.269 15 C -0.075 4.075 16 N -0.173 5.173 17 C -0.040 4.040 18 N -0.142 5.142 19 C -0.091 4.091 20 C -0.022 4.022 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.138 4.138 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.184 0.816 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.066 0.934 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.125 -8.551 -6.286 16.113 hybrid contribution -1.824 0.523 0.912 2.105 sum 10.301 -8.028 -5.374 14.123 Atomic orbital electron populations 1.22026 0.96087 1.02439 0.99075 1.20058 0.93394 0.90834 0.86929 1.22227 0.99569 0.99323 0.99940 1.43830 1.00626 1.67744 1.18685 1.18773 1.13055 0.92204 1.15693 0.94437 1.25927 1.01691 0.95123 0.96754 1.70100 1.35790 1.00922 1.46507 0.85759 0.81211 0.78417 0.78271 1.19750 1.22093 1.21160 1.18880 0.85652 0.89207 0.95843 1.21223 0.91915 1.01351 1.12369 1.22292 0.98747 0.87621 0.98879 1.48647 1.03767 1.14721 1.50207 1.22031 0.99678 0.82372 0.99913 1.76995 0.95129 1.17036 1.24996 1.22382 0.95846 0.92360 0.98554 1.19644 0.88089 0.97251 0.97198 1.21444 0.96393 1.00424 0.95509 1.21536 0.94859 0.98704 1.00191 1.21529 0.98382 0.99966 0.95384 1.21533 0.95139 1.00660 0.98003 1.21434 0.96024 0.98319 0.98051 0.91225 0.94669 0.94022 0.97310 0.95162 0.94148 0.91689 0.94000 0.95115 0.94190 0.81584 0.89965 0.88738 0.88308 0.90292 0.92424 0.93185 0.91694 0.90778 0.90451 0.92046 0.91736 0.90854 0.93428 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.23 7.82 71.98 0.56 -5.67 16 2 C 0.19 8.75 3.25 44.99 0.15 8.90 16 3 C -0.15 -6.63 9.27 71.98 0.67 -5.97 16 4 N -0.59 -28.03 1.74 -682.35 -1.18 -29.21 16 5 C -0.27 -13.79 7.46 84.03 0.63 -13.16 16 6 H 0.04 2.02 7.88 -2.91 -0.02 2.00 16 7 C 0.00 0.25 3.43 84.86 0.29 0.55 16 8 N -0.89 -47.97 9.26 21.65 0.20 -47.77 16 9 Si 0.94 42.25 29.58 68.60 2.03 44.28 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.23 10.23 5.42 85.63 0.46 10.70 16 14 C -0.26 -10.31 6.05 -20.14 -0.12 -10.43 16 15 C 0.07 2.69 10.64 83.54 0.89 3.58 16 16 N -0.39 -13.09 4.01 -369.57 -1.48 -14.57 16 17 C 0.10 2.23 11.47 127.77 1.47 3.69 16 18 N -0.32 -11.39 12.54 -47.38 -0.59 -11.99 16 19 C 0.08 2.71 5.75 43.10 0.25 2.95 16 20 C 0.00 -0.04 2.57 -11.54 -0.03 -0.07 16 21 C -0.10 -2.56 5.19 30.59 0.16 -2.40 16 22 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 23 C -0.12 -2.05 5.92 30.60 0.18 -1.86 16 24 C -0.12 -2.32 5.92 30.58 0.18 -2.14 16 25 C -0.10 -2.61 5.15 30.58 0.16 -2.45 16 26 H 0.07 3.45 4.99 -2.39 -0.01 3.44 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.91 6.95 -2.38 -0.02 1.89 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.03 1.29 6.64 -2.39 -0.02 1.27 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 3.19 6.06 -2.38 -0.01 3.17 16 33 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 34 H 0.03 1.46 8.05 -2.39 -0.02 1.44 16 35 H 0.04 1.73 6.66 -2.39 -0.02 1.71 16 36 H 0.17 6.62 7.46 -2.91 -0.02 6.60 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.43 7.52 -2.39 -0.02 2.41 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -59.50 380.51 5.92 -53.58 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.88 Total: 21.58 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 6.07 Total: -15.90 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.06 Total: -103.54 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -59.50 5.92 -53.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097108431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.844 kcal (2) G-P(sol) polarization free energy of solvation -59.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds