Wall clock time and date at job start Fri Apr 10 2020 17:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99610 * 2 1 4 4 C 1.46892 * 110.99916 * 123.94827 * 2 1 3 5 5 H 1.08998 * 109.50228 * 299.93838 * 4 2 1 6 6 C 1.53042 * 109.49891 * 60.00312 * 4 2 1 7 7 C 1.53039 * 109.54198 * 181.34827 * 6 4 2 8 8 C 1.53196 * 109.33748 * 298.62051 * 7 6 4 9 9 N 1.46995 * 108.73708 * 54.62190 * 8 7 6 10 10 S 1.65600 * 120.61359 * 126.38974 * 9 8 7 11 11 O 1.42103 * 106.39935 * 23.55886 * 10 9 8 12 12 O 1.42094 * 106.40240 * 156.47907 * 10 9 8 13 13 N 1.65602 * 107.21649 * 270.01908 * 10 9 8 14 14 C 1.46503 * 119.99939 * 90.00129 * 13 10 9 15 15 C 1.46499 * 119.99560 * 269.99950 * 13 10 9 16 16 C 1.50701 * 109.46952 * 95.00436 * 15 13 10 17 17 H 1.07998 * 119.99836 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99656 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99605 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47192 * 60.00188 * 20 18 16 22 22 H 1.48509 * 109.46814 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47055 * 299.99907 * 20 18 16 24 24 C 1.46925 * 118.75597 * 306.40484 * 9 8 7 25 25 H 1.08996 * 109.47680 * 296.04785 * 1 2 3 26 26 H 1.08999 * 109.46860 * 56.04849 * 1 2 3 27 27 H 1.08998 * 109.46798 * 176.04843 * 1 2 3 28 28 H 1.08995 * 109.46696 * 183.95275 * 3 2 1 29 29 H 1.08998 * 109.46948 * 303.94947 * 3 2 1 30 30 H 1.09000 * 109.47000 * 63.95414 * 3 2 1 31 31 H 1.09006 * 109.45643 * 61.32460 * 6 4 2 32 32 H 1.08998 * 109.45200 * 301.36354 * 6 4 2 33 33 H 1.09002 * 109.49756 * 58.58775 * 7 6 4 34 34 H 1.09000 * 109.49883 * 178.65518 * 7 6 4 35 35 H 1.09001 * 109.58261 * 174.43824 * 8 7 6 36 36 H 1.08996 * 109.58319 * 294.86146 * 8 7 6 37 37 H 1.09002 * 109.46877 * 89.99659 * 14 13 10 38 38 H 1.08998 * 109.46651 * 209.99817 * 14 13 10 39 39 H 1.08998 * 109.46861 * 329.99737 * 14 13 10 40 40 H 1.09001 * 109.46441 * 214.99731 * 15 13 10 41 41 H 1.08989 * 109.47448 * 334.99893 * 15 13 10 42 42 H 0.96997 * 119.99921 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58683 * 293.82929 * 24 9 8 44 44 H 1.08993 * 109.58510 * 173.40005 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1376 5 1 1.6471 -0.3196 2.0691 6 6 1.5051 -2.2129 1.0499 7 6 2.0254 -3.0035 2.2526 8 6 3.5572 -3.0105 2.2309 9 7 4.0349 -1.6217 2.1683 10 16 5.1250 -1.0541 3.2782 11 8 5.8140 -2.1905 3.7813 12 8 5.7837 0.0466 2.6670 13 7 4.2570 -0.4347 4.5453 14 6 3.8885 -1.2964 5.6714 15 6 3.8577 0.9748 4.5400 16 6 2.4600 1.0989 3.9903 17 1 1.9231 0.2161 3.6760 18 6 1.8669 2.3394 3.8888 19 7 2.5206 3.4142 4.2721 20 14 0.1346 2.4932 3.2068 21 1 -0.8028 1.7158 4.0566 22 1 -0.2702 3.9221 3.2016 23 1 0.1000 1.9644 1.8196 24 6 3.5269 -0.7468 1.1029 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 1.8745 -2.6663 0.1300 32 1 0.4153 -2.2275 1.0497 33 1 1.6767 -2.5361 3.1736 34 1 1.6562 -4.0278 2.2020 35 1 3.9332 -3.4867 3.1364 36 1 3.9076 -3.5572 1.3555 37 1 4.6723 -1.2604 6.4281 38 1 2.9502 -0.9483 6.1032 39 1 3.7689 -2.3214 5.3206 40 1 3.8836 1.3634 5.5580 41 1 4.5456 1.5449 3.9158 42 1 2.1034 4.2869 4.2003 43 1 3.8749 -1.1090 0.1356 44 1 3.8834 0.2704 1.2644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109840132.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:21 Heat of formation + Delta-G solvation = -60.919576 kcal Electronic energy + Delta-G solvation = -26486.947150 eV Core-core repulsion = 22987.515508 eV Total energy + Delta-G solvation = -3499.431643 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.92635 -36.73380 -35.80114 -35.48802 -35.21559 -32.55574 -31.91497 -29.81744 -27.81635 -27.42255 -25.13006 -24.23181 -23.71457 -22.35043 -21.44129 -19.65108 -18.37963 -17.37528 -16.80391 -16.44689 -15.90484 -15.17393 -14.87776 -14.80925 -14.53509 -14.24654 -13.76156 -13.51613 -13.35520 -13.25230 -12.94941 -12.67377 -12.36312 -12.21916 -11.89059 -11.86076 -11.71717 -11.54972 -11.29053 -11.21609 -11.15832 -11.07154 -10.96601 -10.81525 -10.71983 -10.53707 -10.43568 -10.22169 -9.95287 -9.69789 -8.67065 -8.53063 -8.04873 -7.80025 -6.17526 -4.23933 1.25382 3.11535 3.20760 3.23692 3.43606 4.11634 4.26791 4.29934 4.87218 5.01314 5.10014 5.15168 5.19517 5.37563 5.46248 5.54271 5.61848 5.64481 5.77551 5.81439 5.89337 5.96652 6.02400 6.05206 6.09282 6.13230 6.17573 6.23967 6.29076 6.35171 6.46810 6.49544 6.58678 6.66226 6.89381 7.31187 7.36882 7.39241 7.45323 7.61836 7.80135 8.10407 8.80328 9.40810 10.90137 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.009320 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.979990 B = 3003.563302 C = 4208.778146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.539 5.539 3 C 0.010 3.990 4 C 0.057 3.943 5 H 0.078 0.922 6 C -0.108 4.108 7 C -0.133 4.133 8 C 0.125 3.875 9 N -1.002 6.002 10 S 2.786 3.214 11 O -0.999 6.999 12 O -0.977 6.977 13 N -0.997 5.997 14 C 0.108 3.892 15 C 0.245 3.755 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.887 5.887 20 Si 0.870 3.130 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.252 1.252 24 C 0.139 3.861 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.050 0.950 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 -10.092 -5.074 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.263 5.263 3 C -0.138 4.138 4 C -0.052 4.052 5 H 0.096 0.904 6 C -0.145 4.145 7 C -0.173 4.173 8 C -0.001 4.001 9 N -0.841 5.841 10 S 2.795 3.205 11 O -0.983 6.983 12 O -0.961 6.961 13 N -0.839 5.839 14 C -0.039 4.039 15 C 0.122 3.878 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.699 3.301 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.178 1.178 24 C 0.013 3.987 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.941 -10.116 -5.550 11.701 hybrid contribution -1.938 0.722 0.498 2.127 sum -3.879 -9.394 -5.052 11.350 Atomic orbital electron populations 1.22512 0.88313 1.01500 1.00806 1.62085 1.07330 1.14098 1.42782 1.22610 1.00920 0.88830 1.01474 1.22242 0.95202 0.93832 0.93946 0.90406 1.21535 1.00031 0.94830 0.98151 1.21915 0.95665 1.00151 0.99528 1.21328 0.94328 0.82059 1.02416 1.58210 1.63054 1.18561 1.44260 1.01777 0.73669 0.72386 0.72660 1.93526 1.71709 1.52767 1.80299 1.93566 1.72461 1.53577 1.76473 1.57682 1.73013 1.20483 1.32760 1.21202 1.00925 0.92475 0.89312 1.19198 0.95656 0.73879 0.99022 1.21558 1.00078 0.92912 1.43096 0.91658 1.24899 0.97459 0.95740 0.95414 1.69912 1.37384 0.98443 1.46714 0.87180 0.85052 0.77325 0.80584 1.20572 1.21420 1.17755 1.21286 0.93012 0.94639 0.89719 0.94842 0.92064 0.91672 0.91061 0.92327 0.93217 0.91547 0.92130 0.91148 0.91173 0.89840 0.91600 0.93809 0.90909 0.93034 0.94538 0.93203 0.92551 0.91528 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.15 60.07 0.55 0.80 16 2 N -0.54 -8.60 4.89 -243.03 -1.19 -9.79 16 3 C 0.01 0.16 9.05 60.07 0.54 0.71 16 4 C 0.06 0.94 2.09 -67.59 -0.14 0.80 16 5 H 0.08 1.51 5.30 -51.93 -0.28 1.23 16 6 C -0.11 -1.45 4.97 -26.69 -0.13 -1.58 16 7 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 8 C 0.12 1.71 6.38 -3.67 -0.02 1.69 16 9 N -1.00 -17.09 3.35 -113.47 -0.38 -17.47 16 10 S 2.79 55.92 6.06 -107.50 -0.65 55.26 16 11 O -1.00 -20.50 15.93 -57.17 -0.91 -21.41 16 12 O -0.98 -22.68 15.40 -57.17 -0.88 -23.56 16 13 N -1.00 -20.34 3.23 -123.05 -0.40 -20.73 16 14 C 0.11 1.82 10.31 59.85 0.62 2.44 16 15 C 0.24 5.90 5.41 -5.19 -0.03 5.87 16 16 C -0.54 -13.17 8.99 -34.44 -0.31 -13.48 16 17 H 0.07 1.54 5.51 -52.49 -0.29 1.25 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -24.40 13.29 55.43 0.74 -23.67 16 20 Si 0.87 19.21 28.23 -169.99 -4.80 14.41 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.25 -5.06 3.38 56.52 0.19 -4.87 16 24 C 0.14 2.40 5.11 -3.71 -0.02 2.38 16 25 H 0.03 0.54 5.95 -51.93 -0.31 0.23 16 26 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.06 0.83 6.28 -51.93 -0.33 0.50 16 28 H 0.07 1.20 6.37 -51.93 -0.33 0.86 16 29 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 30 H 0.05 0.97 5.08 -51.93 -0.26 0.70 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.77 6.33 -51.93 -0.33 0.44 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.11 7.13 -51.93 -0.37 0.74 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 39 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 40 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 41 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 1.89 5.68 -51.93 -0.29 1.59 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -29.45 338.88 -9.68 -39.13 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.12 Total: 3.29 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 0.80 Total: -0.57 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.23 Total: -71.66 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.79 Total: -44.97 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.80 Total: 14.41 kcal Atomic # 16 Polarization: 55.92 SS G_CDS: -0.65 Total: 55.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.45 -9.68 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109840132.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.785 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds