Wall clock time and date at job start Fri Apr 10 2020 17:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99610 * 2 1 4 4 C 1.46892 * 110.99916 * 123.94827 * 2 1 3 5 5 H 1.08998 * 109.50228 * 299.93838 * 4 2 1 6 6 C 1.53042 * 109.49891 * 60.00312 * 4 2 1 7 7 C 1.53039 * 109.54198 * 181.34827 * 6 4 2 8 8 C 1.53196 * 109.33748 * 298.62051 * 7 6 4 9 9 N 1.46995 * 108.73708 * 54.62190 * 8 7 6 10 10 S 1.65600 * 120.61359 * 126.38974 * 9 8 7 11 11 O 1.42103 * 106.39935 * 23.55886 * 10 9 8 12 12 O 1.42094 * 106.40240 * 156.47907 * 10 9 8 13 13 N 1.65602 * 107.21649 * 270.01908 * 10 9 8 14 14 C 1.46503 * 119.99939 * 90.00129 * 13 10 9 15 15 C 1.46499 * 119.99560 * 269.99950 * 13 10 9 16 16 C 1.50701 * 109.46952 * 95.00436 * 15 13 10 17 17 H 1.07998 * 119.99836 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99656 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99605 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47192 * 60.00188 * 20 18 16 22 22 H 1.48509 * 109.46814 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47055 * 299.99907 * 20 18 16 24 24 C 1.46925 * 118.75597 * 306.40484 * 9 8 7 25 25 H 1.08996 * 109.47680 * 296.04785 * 1 2 3 26 26 H 1.08999 * 109.46860 * 56.04849 * 1 2 3 27 27 H 1.08998 * 109.46798 * 176.04843 * 1 2 3 28 28 H 1.08995 * 109.46696 * 183.95275 * 3 2 1 29 29 H 1.08998 * 109.46948 * 303.94947 * 3 2 1 30 30 H 1.09000 * 109.47000 * 63.95414 * 3 2 1 31 31 H 1.09006 * 109.45643 * 61.32460 * 6 4 2 32 32 H 1.08998 * 109.45200 * 301.36354 * 6 4 2 33 33 H 1.09002 * 109.49756 * 58.58775 * 7 6 4 34 34 H 1.09000 * 109.49883 * 178.65518 * 7 6 4 35 35 H 1.09001 * 109.58261 * 174.43824 * 8 7 6 36 36 H 1.08996 * 109.58319 * 294.86146 * 8 7 6 37 37 H 1.09002 * 109.46877 * 89.99659 * 14 13 10 38 38 H 1.08998 * 109.46651 * 209.99817 * 14 13 10 39 39 H 1.08998 * 109.46861 * 329.99737 * 14 13 10 40 40 H 1.09001 * 109.46441 * 214.99731 * 15 13 10 41 41 H 1.08989 * 109.47448 * 334.99893 * 15 13 10 42 42 H 0.96997 * 119.99921 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.58683 * 293.82929 * 24 9 8 44 44 H 1.08993 * 109.58510 * 173.40005 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1376 5 1 1.6471 -0.3196 2.0691 6 6 1.5051 -2.2129 1.0499 7 6 2.0254 -3.0035 2.2526 8 6 3.5572 -3.0105 2.2309 9 7 4.0349 -1.6217 2.1683 10 16 5.1250 -1.0541 3.2782 11 8 5.8140 -2.1905 3.7813 12 8 5.7837 0.0466 2.6670 13 7 4.2570 -0.4347 4.5453 14 6 3.8885 -1.2964 5.6714 15 6 3.8577 0.9748 4.5400 16 6 2.4600 1.0989 3.9903 17 1 1.9231 0.2161 3.6760 18 6 1.8669 2.3394 3.8888 19 7 2.5206 3.4142 4.2721 20 14 0.1346 2.4932 3.2068 21 1 -0.8028 1.7158 4.0566 22 1 -0.2702 3.9221 3.2016 23 1 0.1000 1.9644 1.8196 24 6 3.5269 -0.7468 1.1029 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 1.8745 -2.6663 0.1300 32 1 0.4153 -2.2275 1.0497 33 1 1.6767 -2.5361 3.1736 34 1 1.6562 -4.0278 2.2020 35 1 3.9332 -3.4867 3.1364 36 1 3.9076 -3.5572 1.3555 37 1 4.6723 -1.2604 6.4281 38 1 2.9502 -0.9483 6.1032 39 1 3.7689 -2.3214 5.3206 40 1 3.8836 1.3634 5.5580 41 1 4.5456 1.5449 3.9158 42 1 2.1034 4.2869 4.2003 43 1 3.8749 -1.1090 0.1356 44 1 3.8834 0.2704 1.2644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109840132.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:19 Heat of formation + Delta-G solvation = -83.445515 kcal Electronic energy + Delta-G solvation = -26487.923948 eV Core-core repulsion = 22987.515508 eV Total energy + Delta-G solvation = -3500.408441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.15976 -38.40241 -37.20163 -37.05672 -36.90785 -34.48324 -33.10205 -31.04929 -29.63844 -28.65188 -26.79192 -25.43350 -25.01329 -24.16586 -22.59714 -20.95685 -19.86126 -18.89860 -18.58695 -18.22534 -17.43981 -16.59235 -16.38672 -16.24085 -15.76853 -15.54702 -15.25005 -15.05682 -14.81434 -14.57263 -14.19422 -14.00750 -13.97032 -13.87519 -13.40387 -13.33130 -13.21299 -13.07428 -12.96270 -12.80735 -12.57144 -12.46646 -12.39169 -12.30669 -12.20261 -11.98937 -11.87477 -11.65453 -11.41792 -11.20221 -10.55719 -9.95992 -9.71060 -9.13803 -8.16408 -6.28694 -0.33324 1.36473 1.38791 1.45162 1.92926 2.39104 2.55160 3.04213 3.15570 3.38556 3.74678 3.97455 4.02795 4.13919 4.19431 4.31747 4.42254 4.49938 4.57930 4.60515 4.68905 4.70091 4.78100 4.84806 4.86901 4.94255 4.97372 5.01854 5.05454 5.10232 5.17750 5.23891 5.27337 5.33316 5.43416 5.53437 5.63587 5.77390 5.94756 6.11800 6.12192 6.18718 6.82471 7.40420 8.91235 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.009320 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.979990 B = 3003.563302 C = 4208.778146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.011 3.989 4 C 0.059 3.941 5 H 0.047 0.953 6 C -0.102 4.102 7 C -0.128 4.128 8 C 0.114 3.886 9 N -0.998 5.998 10 S 2.796 3.204 11 O -1.002 7.002 12 O -1.016 7.016 13 N -1.004 6.004 14 C 0.100 3.900 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.077 0.923 18 C 0.020 3.980 19 N -0.928 5.928 20 Si 0.925 3.075 21 H -0.278 1.278 22 H -0.300 1.300 23 H -0.224 1.224 24 C 0.141 3.859 25 H 0.014 0.986 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.019 0.981 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -12.959 -6.504 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.137 4.137 4 C -0.051 4.051 5 H 0.064 0.936 6 C -0.140 4.140 7 C -0.167 4.167 8 C -0.010 4.010 9 N -0.839 5.839 10 S 2.805 3.195 11 O -0.986 6.986 12 O -1.000 7.000 13 N -0.845 5.845 14 C -0.046 4.046 15 C 0.136 3.864 16 C -0.567 4.567 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.568 5.568 20 Si 0.751 3.249 21 H -0.204 1.204 22 H -0.226 1.226 23 H -0.148 1.148 24 C 0.015 3.985 25 H 0.033 0.967 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.782 -13.032 -6.972 15.256 hybrid contribution -1.308 1.546 0.937 2.231 sum -5.089 -11.486 -6.035 13.937 Atomic orbital electron populations 1.22611 0.86988 1.03160 1.00451 1.62151 1.08411 1.13091 1.42166 1.22579 1.00756 0.89653 1.00751 1.22197 0.94323 0.95900 0.92677 0.93555 1.21532 1.00793 0.92443 0.99228 1.21914 0.94433 1.01950 0.98414 1.21710 0.95450 0.79930 1.03917 1.57980 1.62700 1.20053 1.43166 1.01298 0.73836 0.71716 0.72643 1.93512 1.72127 1.52377 1.80594 1.93513 1.73935 1.55330 1.77208 1.57600 1.73109 1.19366 1.34411 1.21439 1.01325 0.93139 0.88672 1.18751 0.95011 0.75699 0.96972 1.21772 0.99910 0.93190 1.41780 0.90495 1.25638 1.01082 0.95451 0.95734 1.70061 1.39198 0.98880 1.48684 0.86311 0.80424 0.76552 0.81571 1.20401 1.22624 1.14791 1.21256 0.93917 0.93104 0.90241 0.96722 0.90535 0.89348 0.91848 0.90272 0.96200 0.90062 0.90884 0.92610 0.87533 0.89291 0.89119 0.92784 0.90842 0.90342 0.96532 0.96698 0.92915 0.89756 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.15 127.69 1.17 1.57 16 2 N -0.53 -15.80 4.89 -922.82 -4.51 -20.31 16 3 C 0.01 0.36 9.05 127.69 1.16 1.52 16 4 C 0.06 1.81 2.09 45.00 0.09 1.90 16 5 H 0.05 1.74 5.30 -2.39 -0.01 1.73 16 6 C -0.10 -2.33 4.97 30.62 0.15 -2.18 16 7 C -0.13 -2.68 6.08 30.67 0.19 -2.49 16 8 C 0.11 2.75 6.38 86.35 0.55 3.30 16 9 N -1.00 -32.62 3.35 -512.90 -1.72 -34.34 16 10 S 2.80 112.20 6.06 -56.49 -0.34 111.86 16 11 O -1.00 -39.97 15.93 -128.00 -2.04 -42.00 16 12 O -1.02 -48.88 15.40 -128.00 -1.97 -50.85 16 13 N -1.00 -41.34 3.23 -543.23 -1.75 -43.09 16 14 C 0.10 3.28 10.31 127.77 1.32 4.60 16 15 C 0.26 13.02 5.41 85.63 0.46 13.49 16 16 C -0.53 -26.41 8.99 25.60 0.23 -26.18 16 17 H 0.08 3.63 5.51 -2.91 -0.02 3.61 16 18 C 0.02 1.07 5.46 84.65 0.46 1.53 16 19 N -0.93 -53.16 13.29 21.45 0.28 -52.88 16 20 Si 0.93 39.95 28.23 68.60 1.94 41.89 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.22 -8.59 3.38 99.48 0.34 -8.25 16 24 C 0.14 4.72 5.11 86.36 0.44 5.16 16 25 H 0.01 0.43 5.95 -2.39 -0.01 0.41 16 26 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 27 H 0.09 1.85 6.28 -2.39 -0.01 1.84 16 28 H 0.06 2.15 6.37 -2.39 -0.02 2.14 16 29 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 30 H 0.02 0.76 5.08 -2.39 -0.01 0.75 16 31 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 1.52 6.33 -2.39 -0.02 1.50 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 2.07 7.13 -2.39 -0.02 2.05 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 39 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 40 H 0.02 0.88 8.11 -2.39 -0.02 0.87 16 41 H 0.01 0.85 6.91 -2.39 -0.02 0.84 16 42 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.06 2.50 5.68 -2.39 -0.01 2.49 16 Total: -1.00 -65.72 338.88 -3.27 -68.99 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.62 Total: 18.52 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.22 Total: 2.21 kcal Atomic # 7 Polarization: -142.93 SS G_CDS: -7.70 Total: -150.62 kcal Atomic # 8 Polarization: -88.84 SS G_CDS: -4.01 Total: -92.85 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.94 Total: 41.89 kcal Atomic # 16 Polarization: 112.20 SS G_CDS: -0.34 Total: 111.86 kcal Total: -65.72 -3.27 -68.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109840132.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.451 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds