Wall clock time and date at job start Fri Apr 10 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86793 * 120.00482 * 2 1 4 4 H 1.48495 * 109.47384 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47390 * 300.00847 * 3 2 1 6 6 H 1.48502 * 109.46773 * 60.00226 * 3 2 1 7 7 C 1.39017 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 179.97438 * 7 2 1 9 9 N 1.36876 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99667 * 179.97438 * 9 7 2 11 11 O 1.21743 * 120.00228 * 359.97438 * 10 9 7 12 12 C 1.46543 * 119.99740 * 179.97438 * 10 9 7 13 13 C 1.38007 * 126.23240 * 179.97438 * 12 10 9 14 14 C 1.39834 * 107.08749 * 179.78007 * 13 12 10 15 15 I 2.09496 * 126.06549 * 180.20860 * 14 13 12 16 16 C 1.35528 * 107.87039 * 0.22838 * 14 13 12 17 17 N 1.35621 * 108.86998 * 0.02562 * 16 14 13 18 18 H 0.97001 * 125.68104 * 180.02562 * 17 16 14 19 19 H 0.97002 * 120.00053 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99958 * 359.97438 * 9 7 2 21 21 H 1.08002 * 126.45999 * 0.05073 * 13 12 10 22 22 H 1.07993 * 125.56027 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6176 0.0000 4 1 3.7080 1.3462 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3963 1.2126 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3245 -2.3893 -0.0016 10 6 1.9983 -3.5565 -0.0026 11 8 3.2157 -3.5566 -0.0031 12 6 1.2655 -4.8255 -0.0032 13 6 1.8216 -6.0886 -0.0048 14 6 0.7639 -7.0032 0.0004 15 53 0.9387 -9.0909 0.0071 16 6 -0.3944 -6.2996 -0.0003 17 7 -0.1030 -4.9751 -0.0062 18 1 -0.7509 -4.2532 -0.0075 19 1 -0.4850 0.8401 0.0004 20 1 0.3545 -2.3892 -0.0016 21 1 2.8752 -6.3260 -0.0050 22 1 -1.3873 -6.7244 0.0026 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115353550.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:26 Heat of formation + Delta-G solvation = -6.242916 kcal Electronic energy + Delta-G solvation = -11451.110181 eV Core-core repulsion = 9058.076597 eV Total energy + Delta-G solvation = -2393.033585 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 305.961 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.26215 -39.70877 -36.17892 -33.70462 -32.97602 -30.77210 -28.83269 -26.94818 -23.65302 -21.09552 -20.74198 -20.39979 -19.01374 -17.11654 -16.33369 -16.00947 -15.86679 -14.77191 -14.67732 -14.53436 -13.66668 -13.52319 -12.98977 -12.91809 -12.51129 -12.13386 -11.66268 -11.39470 -10.84279 -10.69267 -10.18802 -9.85765 -9.25574 -8.59910 -6.05458 0.33314 0.53346 1.38198 1.41235 1.52325 1.55384 2.18470 2.26882 2.40689 3.06579 3.19686 4.09377 4.21223 4.27770 4.74779 4.91205 5.32276 5.50214 5.62868 5.92175 6.38814 6.46577 6.97457 7.35054 7.88944 8.57505 Molecular weight = 305.96amu Principal moments of inertia in cm(-1) A = 0.086222 B = 0.003643 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.665743 B = 7684.566546 C = 7999.379151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.006 4.006 3 Si 0.998 3.002 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.554 5.554 10 C 0.498 3.502 11 O -0.627 6.627 12 C -0.035 4.035 13 C -0.107 4.107 14 C -0.204 4.204 15 I -0.003 7.003 16 C 0.076 3.924 17 N -0.522 5.522 18 H 0.432 0.568 19 H 0.283 0.717 20 H 0.395 0.605 21 H 0.135 0.865 22 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -17.939 0.018 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.208 4.208 3 Si 0.821 3.179 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.189 5.189 10 C 0.287 3.713 11 O -0.515 6.515 12 C -0.150 4.150 13 C -0.136 4.136 14 C -0.350 4.350 15 I 0.143 6.857 16 C -0.065 4.065 17 N -0.119 5.119 18 H 0.272 0.728 19 H 0.092 0.908 20 H 0.229 0.771 21 H 0.153 0.847 22 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.889 -18.980 0.018 19.872 hybrid contribution -0.310 2.443 -0.006 2.462 sum -6.199 -16.537 0.012 17.660 Atomic orbital electron populations 1.69621 1.06887 1.29875 1.48746 1.26120 0.96628 1.02547 0.95468 0.84799 0.78094 0.76493 0.78556 1.19683 1.19307 1.19295 1.19787 0.93109 0.83579 1.50270 0.89783 1.41750 1.09132 1.04661 1.63321 1.17225 0.86949 0.82899 0.84202 1.90636 1.14617 1.87256 1.59004 1.20415 0.83399 0.94566 1.16627 1.21030 0.98961 0.89574 1.04003 1.23673 0.94821 0.96137 1.20324 1.96452 1.99096 0.90969 1.99141 1.22428 1.00175 0.81267 1.02634 1.42187 1.05966 1.08701 1.55064 0.72810 0.90773 0.77069 0.84724 0.76715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.70 13.05 21.68 0.28 -46.42 14 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 14 3 Si 1.00 41.35 29.55 68.60 2.03 43.38 14 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 14 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 14 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 14 7 C -0.34 -18.88 9.68 84.09 0.81 -18.07 14 8 H 0.08 5.03 7.15 -2.91 -0.02 5.01 14 9 N -0.55 -28.26 5.27 -310.73 -1.64 -29.90 14 10 C 0.50 25.05 7.73 86.41 0.67 25.72 14 11 O -0.63 -36.63 16.46 -4.49 -0.07 -36.71 14 12 C -0.03 -1.37 7.05 40.34 0.28 -1.08 14 13 C -0.11 -3.85 10.63 22.60 0.24 -3.61 14 14 C -0.20 -5.67 6.51 22.03 0.14 -5.53 14 15 I 0.00 -0.06 40.67 -18.82 -0.77 -0.82 14 16 C 0.08 1.79 11.85 83.48 0.99 2.77 14 17 N -0.52 -15.03 6.00 -183.52 -1.10 -16.13 14 18 H 0.43 10.68 8.19 -92.71 -0.76 9.92 14 19 H 0.28 13.42 8.31 -92.71 -0.77 12.65 14 20 H 0.40 18.39 7.02 -92.71 -0.65 17.74 14 21 H 0.13 5.09 8.06 -2.91 -0.02 5.06 14 22 H 0.22 3.07 8.06 -2.91 -0.02 3.05 14 Total: -1.00 -65.59 238.05 2.21 -63.38 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.13 Total: 22.88 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 3.61 Total: 0.34 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -2.46 Total: -92.44 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.07 Total: -36.71 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 53 Polarization: -0.06 SS G_CDS: -0.77 Total: -0.82 kcal Total: -65.59 2.21 -63.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115353550.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.136 kcal (2) G-P(sol) polarization free energy of solvation -65.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds