Wall clock time and date at job start Fri Apr 10 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 C 1.53006 * 109.46865 * 119.99772 * 2 1 3 5 5 O 1.42898 * 109.46896 * 55.00414 * 4 2 1 6 6 C 1.35903 * 116.99583 * 180.02562 * 5 4 2 7 7 C 1.38740 * 120.05141 * 179.97438 * 6 5 4 8 8 C 1.38142 * 119.94061 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.05715 * 0.27819 * 8 7 6 10 10 C 1.50701 * 119.94614 * 179.70004 * 9 8 7 11 11 C 1.53010 * 109.47071 * 59.99991 * 10 9 8 12 12 C 1.53001 * 109.47421 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47254 * 300.00001 * 10 9 8 14 14 C 1.38267 * 120.11141 * 359.44766 * 9 8 7 15 15 C 1.38149 * 120.05603 * 0.55119 * 14 9 8 16 16 N 1.46498 * 109.47367 * 239.99762 * 2 1 3 17 17 C 1.34777 * 119.99882 * 84.99960 * 16 2 1 18 18 O 1.21692 * 119.99874 * 0.02562 * 17 16 2 19 19 C 1.46375 * 120.00171 * 179.97438 * 17 16 2 20 20 H 1.07996 * 119.99892 * 353.94832 * 19 17 16 21 21 C 1.40047 * 119.99955 * 173.94029 * 19 17 16 22 22 N 1.30667 * 120.00122 * 6.15683 * 21 19 17 23 23 Si 1.86804 * 119.99756 * 186.15515 * 21 19 17 24 24 H 1.48497 * 109.47014 * 94.98693 * 23 21 19 25 25 H 1.48502 * 109.46853 * 214.98402 * 23 21 19 26 26 H 1.48492 * 109.47081 * 334.98501 * 23 21 19 27 27 H 1.09000 * 109.47999 * 300.00040 * 1 2 3 28 28 H 1.09001 * 109.46774 * 60.00207 * 1 2 3 29 29 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47292 * 295.00312 * 4 2 1 31 31 H 1.08998 * 109.47006 * 175.00096 * 4 2 1 32 32 H 1.07995 * 120.03068 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.97244 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47068 * 60.00061 * 11 10 9 35 35 H 1.08998 * 109.46939 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46851 * 300.00273 * 11 10 9 37 37 H 1.09003 * 109.46620 * 60.00342 * 12 10 9 38 38 H 1.08998 * 109.47555 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47337 * 300.00318 * 12 10 9 40 40 H 1.09003 * 109.47181 * 59.99913 * 13 10 9 41 41 H 1.09003 * 109.47023 * 179.97438 * 13 10 9 42 42 H 1.08995 * 109.46989 * 299.99972 * 13 10 9 43 43 H 1.08007 * 119.97506 * 180.25867 * 14 9 8 44 44 H 1.07998 * 120.02936 * 179.70599 * 15 14 9 45 45 H 0.97002 * 120.00112 * 264.99827 * 16 2 1 46 46 H 0.97001 * 119.99991 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.4701 -2.0303 1.3095 6 6 1.8225 -2.8085 2.3664 7 6 1.3062 -4.0906 2.4880 8 6 1.6655 -4.8794 3.5636 9 6 2.5343 -4.3903 4.5215 10 6 2.9193 -5.2506 5.6974 11 6 3.6010 -6.5252 5.1953 12 6 3.8839 -4.4787 6.6000 13 6 1.6646 -5.6217 6.4903 14 6 3.0546 -3.1151 4.3996 15 6 2.6985 -2.3222 3.3259 16 7 2.0183 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8580 1.1625 -2.4116 19 6 2.6356 -0.7082 -3.5521 20 1 2.9850 -1.7276 -3.4821 21 6 2.6496 -0.0462 -4.7862 22 7 2.3414 1.2219 -4.8509 23 14 3.1091 -0.9763 -6.3397 24 1 1.8753 -1.4569 -7.0120 25 1 3.8523 -0.0738 -7.2554 26 1 3.9648 -2.1374 -5.9867 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7515 -0.1583 2.1370 31 1 3.1262 -0.7995 1.2057 32 1 0.6234 -4.4711 1.7428 33 1 1.2636 -5.8773 3.6589 34 1 4.4949 -6.2608 4.6305 35 1 3.8798 -7.1472 6.0459 36 1 2.9141 -7.0752 4.5521 37 1 3.3987 -3.5706 6.9577 38 1 4.1620 -5.1008 7.4507 39 1 4.7778 -4.2147 6.0349 40 1 0.9777 -6.1719 5.8471 41 1 1.9431 -6.2444 7.3406 42 1 1.1791 -4.7138 6.8479 43 1 3.7364 -2.7368 5.1470 44 1 3.1015 -1.3244 3.2337 45 1 2.2491 -1.6318 -1.1525 46 1 2.3508 1.6803 -5.7057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132722491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:45 Heat of formation + Delta-G solvation = -74.355327 kcal Electronic energy + Delta-G solvation = -24550.421545 eV Core-core repulsion = 21018.503676 eV Total energy + Delta-G solvation = -3531.917869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38103 -38.78938 -37.35895 -35.72642 -33.98109 -32.35490 -31.29169 -30.02436 -28.92001 -27.69590 -27.49951 -26.44793 -26.04916 -22.79076 -22.62337 -20.95483 -19.53433 -19.17803 -18.16249 -17.25575 -16.04822 -15.80605 -15.66111 -15.28357 -14.83719 -14.56362 -14.45112 -14.08637 -13.94973 -13.52414 -13.33429 -13.06765 -12.92998 -12.76819 -12.51973 -12.29939 -12.16948 -12.13378 -11.95406 -11.58310 -11.51787 -11.31784 -11.13276 -10.97431 -10.88398 -10.86066 -10.62411 -10.54274 -10.43969 -10.35710 -10.17706 -9.02741 -8.83403 -8.03226 -7.60854 -7.49983 -6.17939 -4.61535 1.31142 1.41383 3.15404 3.22596 3.26280 3.33983 3.71468 4.12229 4.40389 4.50495 4.59584 4.74700 4.78634 4.82347 4.90101 5.05855 5.16269 5.25882 5.29863 5.34984 5.35307 5.44471 5.48837 5.54371 5.59227 5.60811 5.63804 5.71591 5.79144 5.80874 5.96603 5.98805 6.01709 6.04698 6.16419 6.28088 6.31268 6.38856 6.57281 6.60381 6.77029 6.92050 7.45893 7.53139 7.96848 8.12367 8.36410 9.04745 9.56390 10.61317 10.79923 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.002554 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.406349 B =10959.221726 C =11538.655868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.093 0.907 4 C 0.054 3.946 5 O -0.304 6.304 6 C 0.135 3.865 7 C -0.152 4.152 8 C -0.077 4.077 9 C -0.118 4.118 10 C -0.024 4.024 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.081 4.081 15 C -0.209 4.209 16 N -0.760 5.760 17 C 0.556 3.444 18 O -0.582 6.582 19 C -0.545 4.545 20 H 0.067 0.933 21 C 0.088 3.912 22 N -0.768 5.768 23 Si 0.907 3.093 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.265 1.265 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.384 0.616 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 -13.146 21.787 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.111 0.889 4 C -0.021 4.021 5 O -0.217 6.217 6 C 0.089 3.911 7 C -0.171 4.171 8 C -0.095 4.095 9 C -0.118 4.118 10 C -0.024 4.024 11 C -0.196 4.196 12 C -0.201 4.201 13 C -0.195 4.195 14 C -0.099 4.099 15 C -0.228 4.228 16 N -0.415 5.415 17 C 0.360 3.640 18 O -0.465 6.465 19 C -0.582 4.582 20 H 0.086 0.914 21 C -0.132 4.132 22 N -0.397 5.397 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.189 1.189 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.216 0.784 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.488 -12.116 21.462 24.651 hybrid contribution 0.455 -0.712 -0.660 1.072 sum 0.942 -12.828 20.802 24.458 Atomic orbital electron populations 1.22100 0.96255 1.01790 1.01345 1.20590 0.94146 0.96489 0.83759 0.88946 1.23301 0.98031 0.81227 0.99552 1.86149 1.66823 1.26594 1.42162 1.19117 0.93627 0.91204 0.87154 1.20437 1.03924 0.92342 1.00399 1.20721 0.96714 0.99036 0.93005 1.19627 1.00046 0.95044 0.97089 1.19404 0.95606 0.94573 0.92837 1.21900 1.00625 0.96155 1.00913 1.21961 0.98985 1.00120 0.99051 1.21892 0.96711 1.01369 0.99555 1.20934 0.98617 0.93359 0.97016 1.21298 1.02813 1.01635 0.97051 1.46176 1.72942 1.13069 1.09322 1.18218 0.77841 0.86322 0.81601 1.90590 1.55337 1.16329 1.84293 1.20888 1.45345 1.00113 0.91869 0.91440 1.25699 0.93075 0.94381 1.00014 1.70025 1.35142 1.08875 1.25665 0.86373 0.79042 0.80024 0.81400 1.19812 1.20488 1.18896 0.93522 0.91799 0.92463 0.91664 0.91654 0.85266 0.85844 0.92468 0.92583 0.92446 0.92335 0.92531 0.92268 0.92468 0.92582 0.92542 0.85704 0.85538 0.78431 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.29 37.15 0.35 -2.51 16 2 C 0.16 2.98 2.98 -67.93 -0.20 2.78 16 3 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 4 C 0.05 0.81 4.48 37.16 0.17 0.98 16 5 O -0.30 -4.69 8.99 -19.43 -0.17 -4.87 16 6 C 0.14 1.85 6.69 -39.21 -0.26 1.59 16 7 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 8 C -0.08 -0.81 8.70 -39.61 -0.34 -1.15 16 9 C -0.12 -1.18 4.76 -104.60 -0.50 -1.68 16 10 C -0.02 -0.19 0.85 -155.65 -0.13 -0.32 16 11 C -0.14 -1.01 8.29 37.16 0.31 -0.70 16 12 C -0.14 -1.00 7.13 37.16 0.26 -0.73 16 13 C -0.14 -0.97 8.29 37.16 0.31 -0.66 16 14 C -0.08 -0.86 8.97 -39.60 -0.36 -1.22 16 15 C -0.21 -2.54 9.04 -39.43 -0.36 -2.90 16 16 N -0.76 -17.23 5.06 -55.22 -0.28 -17.51 16 17 C 0.56 15.85 7.71 -12.99 -0.10 15.75 16 18 O -0.58 -18.70 14.71 5.20 0.08 -18.63 16 19 C -0.55 -15.58 9.53 -35.63 -0.34 -15.92 16 20 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 21 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 22 N -0.77 -23.17 11.85 55.55 0.66 -22.51 16 23 Si 0.91 20.38 29.56 -169.99 -5.03 15.36 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.02 7.56 -51.93 -0.39 0.63 16 30 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 31 H 0.07 0.94 7.66 -51.93 -0.40 0.55 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.05 7.09 -52.49 -0.37 0.67 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 37 H 0.06 0.40 7.52 -51.93 -0.39 0.01 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.42 7.50 -51.93 -0.39 0.03 16 40 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.13 1.09 5.89 -52.48 -0.31 0.78 16 44 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 45 H 0.38 8.07 8.36 -40.82 -0.34 7.73 16 46 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -33.74 372.76 -8.23 -41.96 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.41 Total: 7.18 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.69 Total: -6.60 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.38 Total: -40.02 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.10 Total: -23.49 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.74 -8.23 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132722491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.392 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds