Wall clock time and date at job start Fri Apr 10 2020 17:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 C 1.53006 * 109.46865 * 119.99772 * 2 1 3 5 5 O 1.42898 * 109.46896 * 55.00414 * 4 2 1 6 6 C 1.35903 * 116.99583 * 180.02562 * 5 4 2 7 7 C 1.38740 * 120.05141 * 179.97438 * 6 5 4 8 8 C 1.38142 * 119.94061 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.05715 * 0.27819 * 8 7 6 10 10 C 1.50701 * 119.94614 * 179.70004 * 9 8 7 11 11 C 1.53010 * 109.47071 * 59.99991 * 10 9 8 12 12 C 1.53001 * 109.47421 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47254 * 300.00001 * 10 9 8 14 14 C 1.38267 * 120.11141 * 359.44766 * 9 8 7 15 15 C 1.38149 * 120.05603 * 0.55119 * 14 9 8 16 16 N 1.46498 * 109.47367 * 239.99762 * 2 1 3 17 17 C 1.34777 * 119.99882 * 84.99960 * 16 2 1 18 18 O 1.21692 * 119.99874 * 0.02562 * 17 16 2 19 19 C 1.46375 * 120.00171 * 179.97438 * 17 16 2 20 20 H 1.07996 * 119.99892 * 353.94832 * 19 17 16 21 21 C 1.40047 * 119.99955 * 173.94029 * 19 17 16 22 22 N 1.30667 * 120.00122 * 6.15683 * 21 19 17 23 23 Si 1.86804 * 119.99756 * 186.15515 * 21 19 17 24 24 H 1.48497 * 109.47014 * 94.98693 * 23 21 19 25 25 H 1.48502 * 109.46853 * 214.98402 * 23 21 19 26 26 H 1.48492 * 109.47081 * 334.98501 * 23 21 19 27 27 H 1.09000 * 109.47999 * 300.00040 * 1 2 3 28 28 H 1.09001 * 109.46774 * 60.00207 * 1 2 3 29 29 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47292 * 295.00312 * 4 2 1 31 31 H 1.08998 * 109.47006 * 175.00096 * 4 2 1 32 32 H 1.07995 * 120.03068 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.97244 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47068 * 60.00061 * 11 10 9 35 35 H 1.08998 * 109.46939 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46851 * 300.00273 * 11 10 9 37 37 H 1.09003 * 109.46620 * 60.00342 * 12 10 9 38 38 H 1.08998 * 109.47555 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47337 * 300.00318 * 12 10 9 40 40 H 1.09003 * 109.47181 * 59.99913 * 13 10 9 41 41 H 1.09003 * 109.47023 * 179.97438 * 13 10 9 42 42 H 1.08995 * 109.46989 * 299.99972 * 13 10 9 43 43 H 1.08007 * 119.97506 * 180.25867 * 14 9 8 44 44 H 1.07998 * 120.02936 * 179.70599 * 15 14 9 45 45 H 0.97002 * 120.00112 * 264.99827 * 16 2 1 46 46 H 0.97001 * 119.99991 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.4701 -2.0303 1.3095 6 6 1.8225 -2.8085 2.3664 7 6 1.3062 -4.0906 2.4880 8 6 1.6655 -4.8794 3.5636 9 6 2.5343 -4.3903 4.5215 10 6 2.9193 -5.2506 5.6974 11 6 3.6010 -6.5252 5.1953 12 6 3.8839 -4.4787 6.6000 13 6 1.6646 -5.6217 6.4903 14 6 3.0546 -3.1151 4.3996 15 6 2.6985 -2.3222 3.3259 16 7 2.0183 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8580 1.1625 -2.4116 19 6 2.6356 -0.7082 -3.5521 20 1 2.9850 -1.7276 -3.4821 21 6 2.6496 -0.0462 -4.7862 22 7 2.3414 1.2219 -4.8509 23 14 3.1091 -0.9763 -6.3397 24 1 1.8753 -1.4569 -7.0120 25 1 3.8523 -0.0738 -7.2554 26 1 3.9648 -2.1374 -5.9867 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7515 -0.1583 2.1370 31 1 3.1262 -0.7995 1.2057 32 1 0.6234 -4.4711 1.7428 33 1 1.2636 -5.8773 3.6589 34 1 4.4949 -6.2608 4.6305 35 1 3.8798 -7.1472 6.0459 36 1 2.9141 -7.0752 4.5521 37 1 3.3987 -3.5706 6.9577 38 1 4.1620 -5.1008 7.4507 39 1 4.7778 -4.2147 6.0349 40 1 0.9777 -6.1719 5.8471 41 1 1.9431 -6.2444 7.3406 42 1 1.1791 -4.7138 6.8479 43 1 3.7364 -2.7368 5.1470 44 1 3.1015 -1.3244 3.2337 45 1 2.2491 -1.6318 -1.1525 46 1 2.3508 1.6803 -5.7057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132722491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:43 Heat of formation + Delta-G solvation = -95.093175 kcal Electronic energy + Delta-G solvation = -24551.320805 eV Core-core repulsion = 21018.503676 eV Total energy + Delta-G solvation = -3532.817129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32752 -39.95173 -39.10204 -36.73753 -35.62288 -34.51530 -32.19320 -31.74969 -29.87854 -28.33917 -28.19677 -28.03910 -27.63870 -23.82308 -23.57288 -22.53319 -21.13938 -20.03944 -19.37371 -19.11010 -17.49818 -17.22698 -16.78525 -16.53445 -15.97707 -15.93700 -15.61548 -15.09885 -14.96522 -14.73888 -14.57331 -14.32984 -14.19460 -14.02705 -13.64578 -13.49134 -13.34330 -13.14715 -12.87425 -12.74221 -12.72514 -12.62761 -12.55849 -12.49302 -12.07338 -12.04626 -11.95009 -11.88957 -11.55207 -11.54150 -11.28551 -10.93730 -9.90043 -9.85480 -9.48992 -8.96219 -8.30439 -6.85350 0.43935 0.51895 1.39140 1.40325 1.56137 2.21044 2.25219 2.47616 2.83929 3.07767 3.60260 3.69396 3.75556 3.88514 3.97449 4.08934 4.18100 4.18715 4.27506 4.39334 4.43792 4.46937 4.56577 4.64109 4.74551 4.83493 4.83954 4.85620 4.95296 5.02724 5.04635 5.08862 5.09801 5.14985 5.26025 5.31084 5.33154 5.40132 5.46521 5.49865 5.56604 5.77263 5.87808 5.91242 6.21839 6.28791 6.51323 6.86731 7.53776 8.48869 8.66874 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.002554 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.406349 B =10959.221726 C =11538.655868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.073 0.927 4 C 0.069 3.931 5 O -0.322 6.322 6 C 0.108 3.892 7 C -0.165 4.165 8 C -0.077 4.077 9 C -0.114 4.114 10 C -0.025 4.025 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.137 4.137 14 C -0.086 4.086 15 C -0.215 4.215 16 N -0.749 5.749 17 C 0.542 3.458 18 O -0.629 6.629 19 C -0.576 4.576 20 H 0.083 0.917 21 C 0.030 3.970 22 N -0.820 5.820 23 Si 0.997 3.003 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.250 1.250 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.144 0.856 44 H 0.134 0.866 45 H 0.393 0.607 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -15.480 23.181 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.045 3.955 3 H 0.091 0.909 4 C -0.006 4.006 5 O -0.236 6.236 6 C 0.063 3.937 7 C -0.184 4.184 8 C -0.095 4.095 9 C -0.114 4.114 10 C -0.025 4.025 11 C -0.195 4.195 12 C -0.202 4.202 13 C -0.194 4.194 14 C -0.104 4.104 15 C -0.234 4.234 16 N -0.403 5.403 17 C 0.346 3.654 18 O -0.517 6.517 19 C -0.612 4.612 20 H 0.101 0.899 21 C -0.186 4.186 22 N -0.450 5.450 23 Si 0.816 3.184 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.173 1.173 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.226 0.774 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.227 -14.493 22.916 27.142 hybrid contribution 0.214 -0.046 -0.935 0.960 sum 1.441 -14.539 21.981 26.394 Atomic orbital electron populations 1.21980 0.95586 1.01846 1.01018 1.20742 0.94669 0.95922 0.84156 0.90916 1.23033 0.97961 0.81574 0.98035 1.86083 1.67418 1.26671 1.43472 1.19328 0.95283 0.91662 0.87467 1.20615 1.04252 0.92315 1.01183 1.20966 0.96519 0.99662 0.92360 1.19980 0.98916 0.95082 0.97430 1.19472 0.96296 0.94512 0.92181 1.21900 1.00204 0.96027 1.01419 1.21968 0.98618 1.00304 0.99262 1.21886 0.96219 1.01390 0.99930 1.21218 0.98743 0.93516 0.96936 1.21457 1.02554 1.02263 0.97135 1.45881 1.71904 1.13301 1.09215 1.18532 0.77628 0.85972 0.83277 1.90543 1.57373 1.18268 1.85472 1.21416 1.46013 1.00989 0.92815 0.89920 1.26945 0.92213 0.95246 1.04149 1.70179 1.36361 1.11205 1.27240 0.85024 0.79114 0.78591 0.75658 1.18847 1.19539 1.17331 0.90218 0.95654 0.92101 0.88773 0.91258 0.85341 0.83882 0.93283 0.91170 0.92381 0.92274 0.91284 0.92461 0.92379 0.91204 0.93073 0.83845 0.84806 0.77399 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.29 71.98 0.67 -4.73 16 2 C 0.15 5.84 2.98 44.99 0.13 5.97 16 3 H 0.07 3.12 7.58 -2.39 -0.02 3.10 16 4 C 0.07 2.02 4.48 71.98 0.32 2.34 16 5 O -0.32 -9.77 8.99 -92.45 -0.83 -10.60 16 6 C 0.11 2.86 6.69 22.51 0.15 3.01 16 7 C -0.17 -3.96 9.99 22.37 0.22 -3.73 16 8 C -0.08 -1.49 8.70 22.25 0.19 -1.30 16 9 C -0.11 -2.05 4.76 -19.85 -0.09 -2.15 16 10 C -0.02 -0.32 0.85 -52.92 -0.05 -0.37 16 11 C -0.14 -1.67 8.29 71.99 0.60 -1.07 16 12 C -0.14 -1.62 7.13 71.98 0.51 -1.11 16 13 C -0.14 -1.57 8.29 71.98 0.60 -0.97 16 14 C -0.09 -1.67 8.97 22.26 0.20 -1.47 16 15 C -0.22 -4.93 9.04 22.37 0.20 -4.73 16 16 N -0.75 -34.85 5.06 -446.82 -2.26 -37.11 16 17 C 0.54 31.99 7.71 86.36 0.67 32.66 16 18 O -0.63 -42.35 14.71 -4.32 -0.06 -42.42 16 19 C -0.58 -33.49 9.53 24.83 0.24 -33.25 16 20 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 21 C 0.03 1.68 5.49 85.30 0.47 2.15 16 22 N -0.82 -50.86 11.85 21.83 0.26 -50.60 16 23 Si 1.00 41.84 29.56 68.60 2.03 43.87 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 2.18 7.56 -2.39 -0.02 2.17 16 30 H 0.09 2.20 7.66 -2.39 -0.02 2.18 16 31 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 32 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.14 2.12 7.09 -2.91 -0.02 2.10 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.69 7.38 -2.39 -0.02 0.67 16 37 H 0.06 0.66 7.52 -2.39 -0.02 0.64 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.67 7.50 -2.39 -0.02 0.65 16 40 H 0.06 0.65 7.38 -2.39 -0.02 0.63 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.14 2.18 5.89 -2.91 -0.02 2.16 16 44 H 0.13 2.76 6.30 -2.91 -0.02 2.74 16 45 H 0.39 16.74 8.36 -92.71 -0.78 15.97 16 46 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -75.71 372.76 4.36 -71.35 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.19 Total: 34.27 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.03 Total: -8.75 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.00 Total: -87.72 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.89 Total: -53.02 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -75.71 4.36 -71.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132722491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.745 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds