Wall clock time and date at job start Fri Apr 10 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00135 * 2 1 4 4 H 1.08001 * 120.00139 * 200.27930 * 3 2 1 5 5 C 1.38811 * 120.00074 * 20.26975 * 3 2 1 6 6 N 1.31621 * 120.00068 * 15.02528 * 5 3 2 7 7 Si 1.86796 * 120.00268 * 195.01872 * 5 3 2 8 8 H 1.48504 * 109.47031 * 85.00843 * 7 5 3 9 9 H 1.48501 * 109.47455 * 205.00572 * 7 5 3 10 10 H 1.48496 * 109.47468 * 325.01058 * 7 5 3 11 11 C 1.46497 * 119.99892 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47060 * 269.99992 * 11 2 1 13 13 O 1.21280 * 120.00285 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00258 * 180.02562 * 12 11 2 15 15 C 1.47077 * 120.88488 * 179.97438 * 14 12 11 16 16 C 1.53233 * 108.52272 * 231.20389 * 15 14 12 17 17 N 1.46899 * 109.34131 * 306.17052 * 16 15 14 18 18 C 1.39004 * 111.00110 * 187.25638 * 17 16 15 19 19 C 1.39336 * 120.09227 * 179.97438 * 18 17 16 20 20 N 1.31924 * 119.88369 * 179.78765 * 19 18 17 21 21 C 1.32271 * 120.08973 * 0.48464 * 20 19 18 22 22 C 1.38160 * 120.18911 * 359.48769 * 21 20 19 23 23 N 1.32245 * 120.11251 * 0.27681 * 22 21 20 24 24 C 1.46901 * 111.26968 * 63.10269 * 17 16 15 25 25 C 1.47088 * 120.87677 * 0.02562 * 14 12 11 26 26 H 1.09008 * 109.47303 * 275.10400 * 1 2 3 27 27 H 1.09006 * 109.46966 * 35.10176 * 1 2 3 28 28 H 1.08995 * 109.47040 * 155.10266 * 1 2 3 29 29 H 0.97001 * 120.00320 * 179.97438 * 6 5 3 30 30 H 1.09005 * 109.46998 * 149.99911 * 11 2 1 31 31 H 1.08993 * 109.47186 * 30.00059 * 11 2 1 32 32 H 1.09008 * 109.62985 * 111.49467 * 15 14 12 33 33 H 1.09003 * 109.62911 * 350.91900 * 15 14 12 34 34 H 1.09004 * 109.49335 * 186.20894 * 16 15 14 35 35 H 1.09001 * 109.49269 * 66.13257 * 16 15 14 36 36 H 1.07991 * 120.05886 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.90615 * 179.76759 * 21 20 19 38 38 H 1.08003 * 119.94341 * 180.26051 * 22 21 20 39 39 H 1.08998 * 109.48741 * 56.85952 * 24 17 16 40 40 H 1.08998 * 109.49192 * 176.93022 * 24 17 16 41 41 H 1.09006 * 109.62599 * 248.50221 * 25 14 12 42 42 H 1.08994 * 109.63021 * 9.08710 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1795 1.2149 -0.3242 5 6 1.5202 2.3508 0.4165 6 7 0.3864 2.2845 1.0818 7 14 2.2820 4.0127 0.0328 8 1 1.8688 4.4446 -1.3266 9 1 1.8208 5.0110 1.0308 10 1 3.7619 3.9037 0.0891 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 8 2.0550 -1.0199 2.3431 14 7 3.1116 -2.8503 1.6684 15 6 3.3678 -3.2924 3.0476 16 6 4.8601 -3.6114 3.1872 17 7 5.2524 -4.5693 2.1448 18 6 6.5574 -5.0078 2.3369 19 6 7.1235 -5.9247 1.4535 20 7 8.3638 -6.3349 1.6373 21 6 9.0660 -5.8843 2.6636 22 6 8.5083 -4.9747 3.5413 23 7 7.2672 -4.5548 3.3618 24 6 5.0816 -3.9963 0.8030 25 6 3.5990 -3.6928 0.5656 26 1 -0.3634 0.0914 1.0237 27 1 -0.3633 0.8408 -0.5910 28 1 -0.3633 -0.9321 -0.4326 29 1 -0.0533 3.0985 1.3732 30 1 3.1499 -1.1386 -0.5134 31 1 1.6084 -2.0285 -0.5129 32 1 2.7809 -4.1859 3.2607 33 1 3.0965 -2.4982 3.7431 34 1 5.0490 -4.0449 4.1693 35 1 5.4398 -2.6951 3.0760 36 1 6.5492 -6.2959 0.6176 37 1 10.0799 -6.2250 2.8134 38 1 9.0867 -4.6063 4.3756 39 1 5.6583 -3.0748 0.7250 40 1 5.4313 -4.7089 0.0560 41 1 3.0343 -4.6248 0.5398 42 1 3.4806 -3.1632 -0.3796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170777512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:26 Heat of formation + Delta-G solvation = 77.417735 kcal Electronic energy + Delta-G solvation = -25105.377085 eV Core-core repulsion = 21508.792998 eV Total energy + Delta-G solvation = -3596.584087 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56594 -39.66360 -37.86074 -35.23021 -34.77169 -33.97054 -31.76536 -31.01113 -30.72888 -27.89002 -26.56985 -25.77287 -25.23118 -23.56746 -23.26389 -21.90258 -20.76124 -18.78287 -17.79240 -17.71777 -16.99698 -16.75505 -16.13695 -15.62942 -15.47804 -15.11279 -14.77641 -14.68476 -14.58534 -14.18362 -13.51798 -13.30733 -13.19630 -13.02540 -12.55027 -12.35635 -11.90407 -11.77628 -11.60703 -11.48455 -11.34223 -11.27471 -11.13718 -10.82956 -10.65545 -10.39296 -10.33684 -10.00538 -9.86624 -9.38738 -9.04352 -8.58320 -8.46470 -8.22191 -6.77778 -5.67958 -3.13048 0.51892 0.86813 2.97633 3.36916 3.44159 3.44695 3.46497 3.48470 3.54611 3.96782 4.01776 4.24291 4.52176 4.63301 4.79095 4.82808 4.85101 5.06926 5.08845 5.20393 5.27651 5.33483 5.40890 5.50148 5.59925 5.68505 5.74645 5.82196 5.98289 6.06633 6.11440 6.21887 6.32718 6.65148 6.72224 6.87762 7.08500 7.38705 7.52964 7.75143 7.85650 7.94608 8.38713 9.04538 9.23936 9.86028 10.32558 11.36605 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.003158 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.886472 B = 8864.828468 C = 9268.105966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.573 5.573 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.008 3.992 6 N -0.895 5.895 7 Si 0.906 3.094 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.134 3.866 12 C 0.474 3.526 13 O -0.504 6.504 14 N -0.635 5.635 15 C 0.112 3.888 16 C 0.054 3.946 17 N -0.469 5.469 18 C 0.271 3.729 19 C 0.038 3.962 20 N -0.419 5.419 21 C 0.006 3.994 22 C 0.082 3.918 23 N -0.478 5.478 24 C 0.042 3.958 25 C 0.119 3.881 26 H 0.035 0.965 27 H 0.047 0.953 28 H -0.002 1.002 29 H 0.252 0.748 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.316 -18.486 0.232 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.292 5.292 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.191 4.191 6 N -0.538 5.538 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.002 3.998 12 C 0.259 3.741 13 O -0.375 6.375 14 N -0.375 5.375 15 C -0.012 4.012 16 C -0.073 4.073 17 N -0.186 5.186 18 C 0.036 3.964 19 C -0.127 4.127 20 N -0.133 5.133 21 C -0.153 4.153 22 C -0.078 4.078 23 N -0.199 5.199 24 C -0.084 4.084 25 C -0.006 4.006 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.187 0.813 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.528 -18.214 0.803 22.121 hybrid contribution 1.015 1.309 0.243 1.674 sum 13.543 -16.905 1.046 21.686 Atomic orbital electron populations 1.20865 0.81864 0.95475 0.99994 1.43941 1.02157 0.99779 1.83345 1.19136 0.97211 0.84493 1.38158 0.91282 1.25027 0.97850 0.98464 0.97803 1.70122 1.18522 1.26729 1.38414 0.86265 0.78650 0.83971 0.77538 1.21338 1.21703 1.20615 1.21041 0.97743 0.90346 0.90715 1.23807 0.76262 0.78371 0.95612 1.90701 1.48526 1.51773 1.46454 1.48885 1.59196 1.23948 1.05463 1.21596 0.93210 1.00446 0.85951 1.22464 0.96522 0.93847 0.94493 1.59065 1.14993 1.38885 1.05655 1.20987 0.89399 0.93984 0.92018 1.23291 0.92443 0.96474 1.00514 1.68347 1.05761 1.21077 1.18130 1.23532 1.01541 0.97667 0.92524 1.23614 0.91154 0.94004 0.99052 1.68439 1.06914 1.23861 1.20640 1.22780 0.98988 0.99171 0.87495 1.21671 0.91662 0.95861 0.91381 0.94694 0.93388 0.98382 0.93734 0.91045 0.91454 0.91649 0.88436 0.88844 0.92596 0.81252 0.81541 0.81417 0.92601 0.88752 0.90783 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 9.02 59.85 0.54 4.67 16 2 N -0.57 -14.73 2.42 -182.50 -0.44 -15.17 16 3 C -0.26 -7.34 9.68 -15.06 -0.15 -7.49 16 4 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 5 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 6 N -0.89 -27.20 10.66 55.49 0.59 -26.61 16 7 Si 0.91 22.40 29.58 -169.99 -5.03 17.37 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 C 0.13 2.67 4.55 -5.20 -0.02 2.65 16 12 C 0.47 9.76 7.78 -10.99 -0.09 9.68 16 13 O -0.50 -13.28 15.88 5.56 0.09 -13.19 16 14 N -0.63 -9.78 3.01 -172.49 -0.52 -10.30 16 15 C 0.11 1.60 6.60 -3.61 -0.02 1.58 16 16 C 0.05 0.69 4.83 -3.70 -0.02 0.67 16 17 N -0.47 -5.19 4.66 -172.80 -0.80 -5.99 16 18 C 0.27 3.00 6.40 -154.73 -0.99 2.01 16 19 C 0.04 0.37 10.33 -17.10 -0.18 0.20 16 20 N -0.42 -4.23 10.49 -12.88 -0.14 -4.37 16 21 C 0.01 0.05 11.21 -17.39 -0.19 -0.14 16 22 C 0.08 0.70 11.21 -17.40 -0.20 0.51 16 23 N -0.48 -5.47 8.85 -12.24 -0.11 -5.58 16 24 C 0.04 0.41 5.42 -3.73 -0.02 0.39 16 25 C 0.12 1.27 6.50 -3.63 -0.02 1.25 16 26 H 0.03 1.00 7.40 -51.92 -0.38 0.61 16 27 H 0.05 1.28 7.21 -51.93 -0.37 0.91 16 28 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 29 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.07 1.29 7.55 -51.93 -0.39 0.90 16 31 H 0.07 1.13 7.72 -51.93 -0.40 0.72 16 32 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.10 1.63 7.06 -51.93 -0.37 1.27 16 34 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.17 1.24 7.15 -52.49 -0.38 0.87 16 37 H 0.17 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.64 6.65 -51.93 -0.35 0.30 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.95 6.02 -51.93 -0.31 0.63 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -36.70 342.56 -8.48 -45.18 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.84 Total: -2.62 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: -1.45 Total: 16.11 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.42 Total: -68.02 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.70 -8.48 -45.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170777512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.601 kcal (2) G-P(sol) polarization free energy of solvation -36.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds