Wall clock time and date at job start Fri Apr 10 2020 17:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 C 1.50705 * 109.46846 * 179.97438 * 15 13 12 17 17 C 1.38230 * 119.99805 * 269.72320 * 16 15 13 18 18 C 1.38235 * 120.00023 * 179.74825 * 17 16 15 19 19 C 1.38241 * 119.99495 * 0.54906 * 18 17 16 20 20 N 1.48016 * 119.99708 * 179.72459 * 19 18 17 21 21 O 1.21801 * 120.00135 * 179.97438 * 20 19 18 22 22 O 1.21802 * 120.00001 * 359.97438 * 20 19 18 23 23 C 1.38232 * 120.00259 * 359.70532 * 19 18 17 24 24 C 1.38235 * 119.99834 * 89.99992 * 16 15 13 25 25 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 26 26 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 27 27 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 28 28 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 29 29 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 30 30 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 31 31 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 32 32 H 1.08000 * 120.00051 * 0.02562 * 17 16 15 33 33 H 1.07995 * 120.00265 * 180.28131 * 18 17 16 34 34 H 1.07991 * 120.00006 * 180.02562 * 23 19 18 35 35 H 1.07997 * 119.99609 * 359.97438 * 24 16 15 36 36 H 1.09003 * 113.76727 * 221.05145 * 25 12 11 37 37 H 1.09000 * 113.86995 * 89.67487 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 6 -0.9828 -7.3811 1.4228 17 6 -1.6960 -7.9964 0.4111 18 6 -1.9178 -9.3602 0.4525 19 6 -1.4360 -10.1069 1.5114 20 7 -1.6787 -11.5662 1.5589 21 8 -1.2538 -12.2243 2.4916 22 8 -2.3032 -12.1091 0.6651 23 6 -0.7273 -9.4907 2.5258 24 6 -0.5007 -8.1278 2.4815 25 6 2.1608 -3.7358 -0.1538 26 1 -0.4850 -0.8357 0.0860 27 1 -0.0835 -1.7161 -1.5945 28 1 0.8051 -2.6872 1.8427 29 1 -0.6172 -2.9282 0.7358 30 1 -0.6722 -5.5041 2.3901 31 1 -1.5571 -5.4077 0.8488 32 1 -2.0762 -7.4123 -0.4140 33 1 -2.4711 -9.8416 -0.3402 34 1 -0.3506 -10.0741 3.3528 35 1 0.0530 -7.6463 3.2739 36 1 2.4415 -4.1971 -1.1007 37 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186828835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:48 Heat of formation + Delta-G solvation = -29.040922 kcal Electronic energy + Delta-G solvation = -24076.934810 eV Core-core repulsion = 20209.889821 eV Total energy + Delta-G solvation = -3867.044989 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -42.31940 -40.31143 -39.46145 -37.70638 -36.70995 -34.46184 -33.57590 -32.52277 -31.67344 -29.95891 -28.16867 -25.84215 -25.64628 -24.59770 -23.46387 -22.07028 -20.49793 -19.54192 -18.81817 -18.70168 -18.09661 -17.67227 -16.75338 -16.29209 -16.05718 -15.39915 -15.18115 -14.99178 -14.62982 -14.19159 -14.08052 -13.93608 -13.38006 -13.08438 -12.66235 -12.48840 -12.29274 -12.08272 -11.79167 -11.73943 -11.58635 -11.32213 -11.29373 -11.28041 -11.03298 -10.70128 -10.30990 -9.96086 -9.63599 -9.51185 -9.49074 -8.95969 -8.59438 -8.09856 -6.81257 -4.61302 -0.34761 0.72497 1.15994 1.25122 2.81006 2.91497 3.22201 3.26612 3.32110 3.44621 4.10839 4.16332 4.22154 4.25747 4.56715 4.58371 4.69137 4.75743 4.98746 5.08173 5.17754 5.27889 5.39197 5.48026 5.51042 5.53856 5.85907 5.93605 5.97406 5.99996 6.14749 6.21647 6.26449 6.31410 6.61659 7.49189 7.51076 7.96544 8.10397 8.30772 8.37623 8.68638 9.08896 10.50290 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.045629 B = 0.002519 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.494162 B =11110.745375 C =11183.720039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.618 4.618 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.566 6.566 11 C 0.067 3.933 12 N -0.631 5.631 13 C 0.531 3.469 14 O -0.555 6.555 15 C -0.109 4.109 16 C -0.001 4.001 17 C -0.105 4.105 18 C -0.051 4.051 19 C -0.052 4.052 20 N 0.032 4.968 21 O -0.166 6.166 22 O -0.165 6.165 23 C -0.052 4.052 24 C -0.106 4.106 25 C 0.124 3.876 26 H 0.267 0.733 27 H 0.376 0.624 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -10.052 5.365 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.168 4.168 3 Si 0.893 3.107 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.656 4.656 8 H 0.084 0.916 9 C 0.176 3.824 10 O -0.373 6.373 11 C -0.056 4.056 12 N -0.365 5.365 13 C 0.320 3.680 14 O -0.435 6.435 15 C -0.149 4.149 16 C -0.001 4.001 17 C -0.123 4.123 18 C -0.070 4.070 19 C -0.135 4.135 20 N 0.550 4.450 21 O -0.381 6.381 22 O -0.381 6.381 23 C -0.071 4.071 24 C -0.124 4.124 25 C 0.002 3.998 26 H 0.079 0.921 27 H 0.225 0.775 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.019 -8.929 4.926 10.960 hybrid contribution -0.226 -1.559 0.345 1.613 sum -4.244 -10.488 5.271 12.482 Atomic orbital electron populations 1.70972 1.06991 1.30601 1.44702 1.25991 0.96191 1.03080 0.91544 0.83583 0.75199 0.74918 0.77046 1.20504 1.21061 1.20947 1.22219 0.97878 0.91956 1.53559 0.91606 1.20126 0.88304 0.92972 0.81018 1.86256 1.57087 1.56293 1.37691 1.24551 0.99819 0.78700 1.02486 1.50189 1.25929 1.04354 1.56004 1.19800 0.86525 0.81579 0.80126 1.90699 1.58434 1.42881 1.51461 1.20771 0.98215 0.92198 1.03696 1.19877 0.92006 0.95373 0.92889 1.21102 0.99024 0.93226 0.98966 1.21005 0.96222 0.93847 0.95948 1.21098 1.10584 0.79881 1.01926 1.43637 0.98164 1.03595 0.99572 1.94525 1.52890 1.64055 1.26630 1.94529 1.38905 1.73296 1.31323 1.20987 0.94015 0.95199 0.96899 1.21069 0.99774 0.92270 0.99313 1.23328 0.89428 0.90270 0.96765 0.92098 0.77527 0.89244 0.91481 0.87257 0.87176 0.83520 0.82915 0.82953 0.83617 0.90912 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.17 12.80 55.43 0.71 -21.46 16 2 C 0.04 0.91 5.26 -17.82 -0.09 0.82 16 3 Si 1.07 21.62 29.93 -169.99 -5.09 16.53 16 4 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.62 -14.70 8.56 -34.44 -0.29 -14.99 16 8 H 0.07 1.56 7.85 -52.49 -0.41 1.15 16 9 C 0.22 4.70 1.08 -90.84 -0.10 4.60 16 10 O -0.57 -12.92 13.45 -35.23 -0.47 -13.40 16 11 C 0.07 1.24 7.05 -2.97 -0.02 1.22 16 12 N -0.63 -11.50 3.61 -178.27 -0.64 -12.14 16 13 C 0.53 8.98 8.05 -10.98 -0.09 8.89 16 14 O -0.56 -11.20 16.76 5.56 0.09 -11.11 16 15 C -0.11 -1.27 5.58 -29.03 -0.16 -1.43 16 16 C 0.00 -0.01 4.37 -104.62 -0.46 -0.47 16 17 C -0.10 -1.11 9.70 -39.59 -0.38 -1.50 16 18 C -0.05 -0.55 9.56 -39.58 -0.38 -0.93 16 19 C -0.05 -0.62 6.85 -79.95 -0.55 -1.17 16 20 N 0.03 0.44 4.45 33.96 0.15 0.59 16 21 O -0.17 -2.33 18.45 -29.46 -0.54 -2.87 16 22 O -0.17 -2.33 18.45 -29.46 -0.54 -2.88 16 23 C -0.05 -0.55 9.56 -39.58 -0.38 -0.93 16 24 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 25 C 0.12 2.46 8.22 -2.97 -0.02 2.44 16 26 H 0.27 6.32 5.52 -40.82 -0.23 6.09 16 27 H 0.38 8.37 6.95 45.56 0.32 8.69 16 28 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 29 H 0.07 1.16 7.80 -51.92 -0.41 0.75 16 30 H 0.11 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.40 7.61 -52.49 -0.40 1.00 16 34 H 0.15 1.34 7.61 -52.49 -0.40 0.94 16 35 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -29.35 332.73 -7.90 -37.25 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.27 Total: 9.39 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.31 Total: -4.92 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.22 Total: -33.01 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.47 Total: -30.26 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.09 Total: 16.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.35 -7.90 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186828835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.214 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds