Wall clock time and date at job start Fri Apr 10 2020 17:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 C 1.50705 * 109.46846 * 179.97438 * 15 13 12 17 17 C 1.38230 * 119.99805 * 269.72320 * 16 15 13 18 18 C 1.38235 * 120.00023 * 179.74825 * 17 16 15 19 19 C 1.38241 * 119.99495 * 0.54906 * 18 17 16 20 20 N 1.48016 * 119.99708 * 179.72459 * 19 18 17 21 21 O 1.21801 * 120.00135 * 179.97438 * 20 19 18 22 22 O 1.21802 * 120.00001 * 359.97438 * 20 19 18 23 23 C 1.38232 * 120.00259 * 359.70532 * 19 18 17 24 24 C 1.38235 * 119.99834 * 89.99992 * 16 15 13 25 25 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 26 26 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 27 27 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 28 28 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 29 29 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 30 30 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 31 31 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 32 32 H 1.08000 * 120.00051 * 0.02562 * 17 16 15 33 33 H 1.07995 * 120.00265 * 180.28131 * 18 17 16 34 34 H 1.07991 * 120.00006 * 180.02562 * 23 19 18 35 35 H 1.07997 * 119.99609 * 359.97438 * 24 16 15 36 36 H 1.09003 * 113.76727 * 221.05145 * 25 12 11 37 37 H 1.09000 * 113.86995 * 89.67487 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 6 -0.9828 -7.3811 1.4228 17 6 -1.6960 -7.9964 0.4111 18 6 -1.9178 -9.3602 0.4525 19 6 -1.4360 -10.1069 1.5114 20 7 -1.6787 -11.5662 1.5589 21 8 -1.2538 -12.2243 2.4916 22 8 -2.3032 -12.1091 0.6651 23 6 -0.7273 -9.4907 2.5258 24 6 -0.5007 -8.1278 2.4815 25 6 2.1608 -3.7358 -0.1538 26 1 -0.4850 -0.8357 0.0860 27 1 -0.0835 -1.7161 -1.5945 28 1 0.8051 -2.6872 1.8427 29 1 -0.6172 -2.9282 0.7358 30 1 -0.6722 -5.5041 2.3901 31 1 -1.5571 -5.4077 0.8488 32 1 -2.0762 -7.4123 -0.4140 33 1 -2.4711 -9.8416 -0.3402 34 1 -0.3506 -10.0741 3.3528 35 1 0.0530 -7.6463 3.2739 36 1 2.4415 -4.1971 -1.1007 37 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186828835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:45 Heat of formation + Delta-G solvation = -46.912273 kcal Electronic energy + Delta-G solvation = -24077.709770 eV Core-core repulsion = 20209.889821 eV Total energy + Delta-G solvation = -3867.819948 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.32418 -41.56483 -40.59640 -39.13098 -37.75363 -36.12712 -34.53373 -34.33030 -32.47443 -31.19026 -29.45832 -27.25391 -27.09738 -25.97673 -24.27047 -23.09161 -22.00498 -20.46232 -20.24609 -19.83877 -19.68971 -18.68896 -18.13230 -17.43390 -17.11245 -16.77073 -16.48593 -16.12537 -15.75001 -15.70143 -15.50898 -14.90817 -14.60026 -14.36107 -14.10188 -13.84881 -13.44414 -13.20484 -13.16882 -12.95246 -12.82320 -12.63830 -12.43156 -12.37703 -12.37449 -12.34036 -11.91312 -11.30888 -11.14942 -10.73321 -10.50404 -10.42818 -10.19988 -9.65974 -8.66196 -6.46923 -1.31854 -0.06428 0.19516 0.30571 1.50643 1.61672 1.65154 1.76135 1.86326 2.25992 2.56011 2.91921 3.28321 3.31649 3.34527 3.46473 3.60698 3.75263 3.89437 3.92291 4.22134 4.25849 4.32979 4.42745 4.46314 4.60525 4.63170 4.65056 4.69473 4.71555 4.81167 5.00065 5.08956 5.13312 5.41780 5.75875 6.10367 6.42553 6.48741 6.71565 6.94350 7.00792 7.27634 8.67674 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.045629 B = 0.002519 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.494162 B =11110.745375 C =11183.720039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.002 3.998 3 Si 1.105 2.895 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.633 4.633 8 H 0.058 0.942 9 C 0.195 3.805 10 O -0.577 6.577 11 C 0.087 3.913 12 N -0.632 5.632 13 C 0.528 3.472 14 O -0.591 6.591 15 C -0.098 4.098 16 C -0.011 4.011 17 C -0.108 4.108 18 C -0.054 4.054 19 C -0.067 4.067 20 N 0.033 4.967 21 O -0.177 6.177 22 O -0.183 6.183 23 C -0.053 4.053 24 C -0.104 4.104 25 C 0.120 3.880 26 H 0.267 0.733 27 H 0.375 0.625 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.058 0.942 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -9.577 6.455 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.200 4.200 3 Si 0.928 3.072 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.671 4.671 8 H 0.077 0.923 9 C 0.155 3.845 10 O -0.385 6.385 11 C -0.036 4.036 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.472 6.472 15 C -0.137 4.137 16 C -0.012 4.012 17 C -0.126 4.126 18 C -0.073 4.073 19 C -0.150 4.150 20 N 0.547 4.453 21 O -0.391 6.391 22 O -0.395 6.395 23 C -0.072 4.072 24 C -0.122 4.122 25 C -0.002 4.002 26 H 0.079 0.921 27 H 0.224 0.776 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.077 0.923 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.415 -8.489 6.022 11.306 hybrid contribution -0.065 -1.717 -0.032 1.719 sum -4.480 -10.206 5.990 12.654 Atomic orbital electron populations 1.71022 1.07449 1.30807 1.45912 1.26945 0.96437 1.05526 0.91110 0.83049 0.74408 0.72086 0.77631 1.21012 1.19545 1.20686 1.22451 0.97797 0.93254 1.53560 0.92323 1.20352 0.89546 0.92916 0.81707 1.86241 1.57192 1.56216 1.38807 1.24253 1.00116 0.78139 1.01070 1.50156 1.25238 1.05004 1.56114 1.20690 0.87712 0.80282 0.79411 1.90687 1.59960 1.43650 1.52953 1.20779 0.95423 0.92768 1.04711 1.20008 0.92429 0.95328 0.93434 1.21338 0.98794 0.93178 0.99306 1.21194 0.96117 0.94018 0.95972 1.21333 1.11797 0.78758 1.03123 1.43896 0.97777 1.04357 0.99235 1.94506 1.53122 1.64733 1.26783 1.94516 1.39542 1.73922 1.31565 1.21227 0.93453 0.95575 0.96910 1.21358 0.99246 0.92000 0.99637 1.23263 0.90335 0.89908 0.96720 0.92119 0.77628 0.88664 0.90014 0.84356 0.85223 0.81989 0.81795 0.81493 0.81333 0.92343 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.43 12.80 21.45 0.27 -44.15 16 2 C 0.00 0.10 5.26 84.65 0.45 0.55 16 3 Si 1.11 42.78 29.93 68.60 2.05 44.83 16 4 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 6 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.63 -29.72 8.56 25.60 0.22 -29.50 16 8 H 0.06 2.76 7.85 -2.91 -0.02 2.74 16 9 C 0.20 8.32 1.08 -10.88 -0.01 8.31 16 10 O -0.58 -26.19 13.45 -148.98 -2.00 -28.19 16 11 C 0.09 3.03 7.05 86.48 0.61 3.63 16 12 N -0.63 -21.91 3.61 -840.13 -3.03 -24.94 16 13 C 0.53 16.69 8.05 87.66 0.71 17.39 16 14 O -0.59 -23.04 16.76 -3.03 -0.05 -23.09 16 15 C -0.10 -1.94 5.58 29.11 0.16 -1.78 16 16 C -0.01 -0.22 4.37 -19.87 -0.09 -0.31 16 17 C -0.11 -2.05 9.70 22.27 0.22 -1.84 16 18 C -0.05 -1.09 9.56 22.27 0.21 -0.87 16 19 C -0.07 -1.52 6.85 36.38 0.25 -1.27 16 20 N 0.03 0.87 4.45 -46.46 -0.21 0.66 16 21 O -0.18 -4.90 18.45 18.88 0.35 -4.55 16 22 O -0.18 -5.14 18.45 18.88 0.35 -4.79 16 23 C -0.05 -1.01 9.56 22.27 0.21 -0.80 16 24 C -0.10 -1.84 9.70 22.27 0.22 -1.63 16 25 C 0.12 4.73 8.22 86.48 0.71 5.44 16 26 H 0.27 12.39 5.52 -92.70 -0.51 11.88 16 27 H 0.37 16.67 6.95 -74.06 -0.52 16.15 16 28 H 0.10 3.22 8.09 -2.39 -0.02 3.20 16 29 H 0.08 2.61 7.80 -2.38 -0.02 2.59 16 30 H 0.14 1.99 8.09 -2.39 -0.02 1.97 16 31 H 0.13 2.13 8.08 -2.39 -0.02 2.11 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.16 2.81 7.61 -2.91 -0.02 2.79 16 34 H 0.17 2.62 7.61 -2.92 -0.02 2.59 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.10 3.65 8.09 -2.39 -0.02 3.63 16 Total: -1.00 -62.15 332.73 2.46 -59.69 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.86 Total: 27.20 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 3.86 Total: -2.67 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -2.96 Total: -68.43 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -1.36 Total: -60.62 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.05 Total: 44.83 kcal Total: -62.15 2.46 -59.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186828835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.783 kcal (2) G-P(sol) polarization free energy of solvation -62.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds