Wall clock time and date at job start Fri Apr 10 2020 17:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00140 * 2 1 4 4 C 1.50699 * 109.46888 * 275.00025 * 3 2 1 5 5 H 1.08002 * 120.00516 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99783 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 3 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 S 1.65600 * 119.99832 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40272 * 23.54334 * 12 2 1 14 14 O 1.42100 * 106.40363 * 156.45976 * 12 2 1 15 15 N 1.65600 * 107.21852 * 269.99803 * 12 2 1 16 16 C 1.46502 * 119.99612 * 65.00036 * 15 12 2 17 17 C 1.53001 * 109.46812 * 165.00086 * 16 15 12 18 18 C 1.53007 * 109.47016 * 180.02562 * 17 16 15 19 19 H 1.09005 * 109.49706 * 305.07396 * 18 17 16 20 20 C 1.53121 * 109.50075 * 185.00040 * 18 17 16 21 21 C 1.53120 * 109.15616 * 182.40148 * 20 18 17 22 22 C 1.53040 * 109.27958 * 57.65702 * 21 20 18 23 23 N 1.46849 * 109.51878 * 300.81428 * 22 21 20 24 24 C 1.46851 * 111.19673 * 61.74797 * 23 22 21 25 25 H 1.08999 * 109.47261 * 89.99825 * 1 2 3 26 26 H 1.08991 * 109.47208 * 209.99951 * 1 2 3 27 27 H 1.09002 * 109.47104 * 330.00177 * 1 2 3 28 28 H 1.09001 * 109.46452 * 155.00283 * 3 2 1 29 29 H 1.08997 * 109.46855 * 35.00201 * 3 2 1 30 30 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00224 * 244.99656 * 15 12 2 32 32 H 1.09002 * 109.47433 * 284.99840 * 16 15 12 33 33 H 1.09004 * 109.47449 * 45.00197 * 16 15 12 34 34 H 1.09005 * 109.47293 * 299.99703 * 17 16 15 35 35 H 1.08992 * 109.47396 * 59.99866 * 17 16 15 36 36 H 1.08996 * 109.51805 * 302.30309 * 20 18 17 37 37 H 1.08999 * 109.52214 * 62.43274 * 20 18 17 38 38 H 1.09004 * 109.50347 * 177.59494 * 21 20 18 39 39 H 1.08996 * 109.50439 * 297.67150 * 21 20 18 40 40 H 1.08991 * 109.46384 * 60.83158 * 22 21 20 41 41 H 1.09004 * 109.46079 * 180.80707 * 22 21 20 42 42 H 1.00898 * 110.99936 * 185.84225 * 23 22 21 43 43 H 1.09001 * 109.46165 * 178.23993 * 24 23 22 44 44 H 1.08993 * 109.46593 * 58.26822 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2333 6 6 2.9998 2.9509 -1.6664 7 7 3.5026 3.6474 -0.6705 8 14 3.1715 3.5707 -3.4201 9 1 4.4274 3.0427 -4.0111 10 1 2.0127 3.1070 -4.2248 11 1 3.2110 5.0552 -3.4189 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5381 -1.8580 1.5826 16 6 1.3946 -2.1767 2.4411 17 6 1.8875 -2.8832 3.7056 18 6 0.6931 -3.2167 4.6019 19 1 0.1251 -2.3085 4.8039 20 6 1.1943 -3.8103 5.9214 21 6 -0.0079 -4.1964 6.7875 22 6 -0.8858 -5.1877 6.0202 23 7 -1.3404 -4.5725 4.7667 24 6 -0.2051 -4.2363 3.8980 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.1858 1.1176 0.4343 29 1 1.6502 2.0043 0.5895 30 1 3.9661 4.4811 -0.8471 31 1 3.4387 -1.8952 1.9408 32 1 0.8793 -1.2565 2.7166 33 1 0.7078 -2.8308 1.9037 34 1 2.4027 -3.8035 3.4302 35 1 2.5741 -2.2293 4.2429 36 1 1.7956 -4.6962 5.7171 37 1 1.8003 -3.0717 6.4462 38 1 0.3420 -4.6589 7.7105 39 1 -0.5872 -3.3041 7.0245 40 1 -0.3096 -6.0853 5.7962 41 1 -1.7503 -5.4536 6.6286 42 1 -1.9974 -5.1701 4.2880 43 1 -0.5751 -3.8113 2.9649 44 1 0.3680 -5.1384 3.6839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237194409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:16 Heat of formation + Delta-G solvation = -120.439913 kcal Electronic energy + Delta-G solvation = -23894.738393 eV Core-core repulsion = 20392.725754 eV Total energy + Delta-G solvation = -3502.012638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87225 -38.28474 -37.23234 -36.85127 -36.81929 -34.50646 -33.71609 -32.43071 -29.67423 -28.63237 -26.77576 -24.88985 -24.34183 -24.22215 -22.07889 -20.65138 -20.26977 -18.97157 -18.38819 -18.17104 -17.55844 -17.17416 -16.63812 -16.25503 -15.95725 -15.36590 -15.23904 -14.99784 -14.94269 -14.59607 -14.17675 -14.01467 -13.95978 -13.90348 -13.47833 -13.31998 -13.17199 -13.05126 -12.98366 -12.95361 -12.59528 -12.47432 -12.40485 -12.32978 -11.96479 -11.86570 -11.75592 -11.55574 -11.22593 -11.05284 -10.60374 -10.43905 -9.80091 -9.35987 -8.20648 -6.32265 -0.30667 1.38937 1.41595 1.50985 2.05894 2.40613 2.66176 3.10193 3.30914 3.45164 3.73064 3.90562 3.95798 4.04013 4.15988 4.24361 4.34911 4.42057 4.51212 4.57924 4.69728 4.70187 4.77782 4.84064 4.85140 4.96883 4.99533 5.06044 5.06839 5.15078 5.17953 5.20762 5.30851 5.37680 5.46151 5.55443 5.69341 5.86334 6.09333 6.12075 6.18423 6.51971 6.75830 7.36437 8.86941 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.003066 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.605467 B = 9129.854762 C = 9269.234609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.004 6.004 3 C 0.272 3.728 4 C -0.550 4.550 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.273 1.273 12 S 2.798 3.202 13 O -1.009 7.009 14 O -1.013 7.013 15 N -1.120 6.120 16 C 0.109 3.891 17 C -0.113 4.113 18 C -0.080 4.080 19 H 0.077 0.923 20 C -0.115 4.115 21 C -0.118 4.118 22 C 0.055 3.945 23 N -0.699 5.699 24 C 0.055 3.945 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.030 0.970 30 H 0.268 0.732 31 H 0.422 0.578 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.350 0.650 43 H 0.075 0.925 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 -16.084 15.928 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.845 5.845 3 C 0.148 3.852 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.191 1.191 11 H -0.198 1.198 12 S 2.806 3.194 13 O -0.993 6.993 14 O -0.997 6.997 15 N -0.883 5.883 16 C -0.016 4.016 17 C -0.153 4.153 18 C -0.100 4.100 19 H 0.096 0.904 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.074 4.074 23 N -0.331 5.331 24 C -0.074 4.074 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.257 0.743 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.168 0.832 43 H 0.093 0.907 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.076 -15.777 15.395 23.476 hybrid contribution 0.856 -0.082 -0.903 1.247 sum -7.221 -15.859 14.491 22.664 Atomic orbital electron populations 1.21481 0.78067 1.03343 1.01847 1.57513 1.15666 1.22042 1.89319 1.18637 0.90496 0.80226 0.95834 1.21850 1.36197 1.06655 0.94281 0.93140 1.25745 0.94811 0.96756 1.01474 1.70004 1.37848 1.15792 1.32721 0.85591 0.78695 0.77716 0.79934 1.20447 1.19068 1.19754 1.01207 0.72038 0.72436 0.73729 1.93507 1.67704 1.60172 1.77875 1.93570 1.42964 1.85443 1.77704 1.55794 1.16078 1.85528 1.30932 1.21573 0.87319 1.00411 0.92299 1.21771 0.98406 1.01059 0.94026 1.21122 0.95030 0.99000 0.94849 0.90430 1.21621 0.97689 1.00860 0.95122 1.21593 0.96185 0.99616 0.98174 1.21982 0.98931 0.95123 0.91412 1.60259 1.16164 1.49879 1.06825 1.22078 0.91870 0.97646 0.95821 0.93832 0.89854 0.90164 0.96506 0.95160 0.92338 0.74293 0.91027 0.90610 0.90752 0.89969 0.92042 0.91109 0.90422 0.91801 0.95273 0.90035 0.83188 0.90708 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.27 10.33 127.77 1.32 4.58 16 2 N -1.00 -41.54 3.23 -543.23 -1.75 -43.29 16 3 C 0.27 13.87 5.12 85.63 0.44 14.31 16 4 C -0.55 -31.64 9.38 25.60 0.24 -31.40 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.66 5.46 84.66 0.46 1.13 16 7 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 S 2.80 110.29 6.05 -56.49 -0.34 109.94 16 13 O -1.01 -41.26 16.68 -128.00 -2.14 -43.39 16 14 O -1.01 -49.54 17.11 -128.00 -2.19 -51.73 16 15 N -1.12 -31.38 6.05 -187.48 -1.14 -32.52 16 16 C 0.11 2.40 6.01 86.38 0.52 2.92 16 17 C -0.11 -1.88 4.83 30.60 0.15 -1.73 16 18 C -0.08 -1.24 2.35 -10.74 -0.03 -1.27 16 19 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 20 C -0.12 -1.53 5.29 30.68 0.16 -1.37 16 21 C -0.12 -1.46 6.09 30.65 0.19 -1.28 16 22 C 0.05 0.69 6.55 86.33 0.57 1.25 16 23 N -0.70 -10.39 6.85 -514.00 -3.52 -13.91 16 24 C 0.06 0.88 5.57 86.32 0.48 1.37 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 2.20 7.79 -2.39 -0.02 2.19 16 27 H 0.08 2.44 7.94 -2.39 -0.02 2.42 16 28 H 0.02 0.92 7.61 -2.39 -0.02 0.91 16 29 H 0.03 1.56 7.96 -2.39 -0.02 1.54 16 30 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 31 H 0.42 10.35 8.65 -96.75 -0.84 9.51 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.67 6.20 -2.38 -0.01 1.66 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.35 4.30 8.90 -89.70 -0.80 3.50 16 43 H 0.07 1.27 6.62 -2.39 -0.02 1.25 16 44 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -72.40 362.58 -4.91 -77.31 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.65 Total: 16.19 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 4.50 Total: -11.49 kcal Atomic # 7 Polarization: -137.82 SS G_CDS: -6.12 Total: -143.94 kcal Atomic # 8 Polarization: -90.80 SS G_CDS: -4.33 Total: -95.13 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 110.29 SS G_CDS: -0.34 Total: 109.94 kcal Total: -72.40 -4.91 -77.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.130 kcal (2) G-P(sol) polarization free energy of solvation -72.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds