Wall clock time and date at job start Fri Apr 10 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99971 * 2 1 4 4 C 1.50698 * 109.47388 * 277.22544 * 3 2 1 5 5 H 1.07993 * 120.00072 * 5.06329 * 4 3 2 6 6 C 1.37879 * 119.99780 * 185.06928 * 4 3 2 7 7 N 1.31519 * 120.00133 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99832 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46668 * 60.00585 * 8 6 4 10 10 H 1.48498 * 109.46907 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47527 * 300.00203 * 8 6 4 12 12 S 1.65606 * 120.00123 * 180.02562 * 2 1 3 13 13 O 1.42093 * 106.40031 * 330.41139 * 12 2 1 14 14 O 1.42095 * 106.39888 * 197.48893 * 12 2 1 15 15 N 1.65596 * 107.21785 * 83.95113 * 12 2 1 16 16 C 1.46503 * 120.00003 * 293.07575 * 15 12 2 17 17 H 1.09001 * 109.46755 * 26.59939 * 16 15 12 18 18 C 1.52998 * 109.47265 * 266.59523 * 16 15 12 19 19 C 1.52996 * 109.47052 * 300.00114 * 18 16 15 20 20 C 1.52998 * 109.47234 * 299.99535 * 19 18 16 21 21 C 1.53010 * 109.46989 * 60.00275 * 20 19 18 22 22 C 1.52996 * 109.46908 * 299.99925 * 21 20 19 23 23 H 1.08992 * 109.47568 * 299.99900 * 22 21 20 24 24 C 1.52998 * 109.47052 * 179.97438 * 22 21 20 25 25 N 1.46901 * 109.47130 * 64.99841 * 24 22 21 26 26 H 1.08992 * 109.46873 * 269.99565 * 1 2 3 27 27 H 1.09000 * 109.47089 * 29.99594 * 1 2 3 28 28 H 1.09001 * 109.47073 * 149.99331 * 1 2 3 29 29 H 1.09001 * 109.46779 * 37.22642 * 3 2 1 30 30 H 1.09005 * 109.47076 * 157.22123 * 3 2 1 31 31 H 0.97001 * 120.00021 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00222 * 113.08161 * 15 12 2 33 33 H 1.09003 * 109.46656 * 179.97438 * 18 16 15 34 34 H 1.08997 * 109.46876 * 60.00313 * 18 16 15 35 35 H 1.09006 * 109.46907 * 180.02562 * 19 18 16 36 36 H 1.08996 * 109.47305 * 60.00286 * 19 18 16 37 37 H 1.08996 * 109.47588 * 300.00578 * 20 19 18 38 38 H 1.08997 * 109.47255 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47144 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.46708 * 59.99764 * 21 20 19 41 41 H 1.08996 * 109.47299 * 185.00109 * 24 22 21 42 42 H 1.09001 * 109.47210 * 304.99928 * 24 22 21 43 43 H 1.00903 * 110.99477 * 56.04790 * 25 24 22 44 44 H 1.00898 * 110.99787 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2939 1.7931 -1.4095 5 1 1.7846 1.2809 -2.2123 6 6 3.0326 2.9269 -1.6741 7 7 3.6534 3.5504 -0.6966 8 14 3.1527 3.5766 -3.4214 9 1 1.7940 3.9090 -3.9204 10 1 3.9981 4.7973 -3.4386 11 1 3.7608 2.5405 -4.2942 12 16 2.2931 -1.4342 -0.0006 13 8 1.4671 -2.3746 0.6720 14 8 3.6196 -1.1317 0.4091 15 7 2.3938 -1.9413 -1.5738 16 6 1.1822 -2.3424 -2.2932 17 1 0.3202 -1.8289 -1.8674 18 6 0.9898 -3.8548 -2.1645 19 6 2.1999 -4.5755 -2.7620 20 6 2.3370 -4.2029 -4.2396 21 6 2.5295 -2.6904 -4.3684 22 6 1.3194 -1.9697 -3.7708 23 1 0.4180 -2.2680 -4.3059 24 6 1.5121 -0.4573 -3.8990 25 7 1.5244 -0.0839 -5.3197 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6704 1.9925 0.6217 30 1 3.1998 1.1096 0.3979 31 1 4.1727 4.3482 -0.8827 32 1 3.2550 -1.9729 -2.0190 33 1 0.0881 -4.1531 -2.6994 34 1 0.8920 -4.1203 -1.1119 35 1 2.0625 -5.6530 -2.6708 36 1 3.1013 -4.2772 -2.2268 37 1 1.4356 -4.5012 -4.7748 38 1 3.1988 -4.7167 -4.6654 39 1 2.6277 -2.4249 -5.4209 40 1 3.4309 -2.3920 -3.8331 41 1 0.6939 0.0572 -3.3951 42 1 2.4585 -0.1714 -3.4400 43 1 0.6839 -0.3959 -5.7827 44 1 1.6508 0.9110 -5.4309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237194727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:26 Heat of formation + Delta-G solvation = -95.445550 kcal Electronic energy + Delta-G solvation = -25981.755663 eV Core-core repulsion = 22480.826861 eV Total energy + Delta-G solvation = -3500.928801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.38605 -36.57159 -35.51188 -35.17555 -34.41636 -33.29313 -32.49100 -30.15189 -29.01265 -27.80821 -25.14674 -24.36640 -22.49335 -22.26495 -20.91169 -19.74548 -18.54903 -17.31165 -16.68258 -16.58212 -15.95164 -15.54706 -15.00553 -14.84475 -14.45227 -14.28924 -14.05609 -13.87292 -13.43418 -13.31390 -12.81766 -12.42446 -12.28598 -12.23417 -12.08076 -11.91985 -11.67210 -11.57473 -11.39240 -11.18072 -11.12785 -11.11050 -10.85214 -10.70761 -10.54542 -10.41413 -10.34199 -10.11737 -9.86957 -9.67670 -9.03830 -8.50232 -8.42025 -8.03792 -6.11630 -4.17997 1.34117 3.22051 3.28295 3.29998 3.54997 4.20107 4.34015 4.56964 4.75658 4.85169 4.97187 5.07724 5.21437 5.23863 5.29972 5.37374 5.51594 5.54523 5.60033 5.66215 5.71633 5.88146 6.00153 6.02321 6.05316 6.17509 6.20352 6.23612 6.25859 6.41322 6.43243 6.53821 6.54289 6.67960 7.23173 7.32701 7.39778 7.49001 7.63236 7.67542 7.85803 8.15694 8.86558 9.47540 10.96616 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.007711 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.576745 B = 3630.528377 C = 4988.005957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.543 4.543 5 H 0.071 0.929 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.269 1.269 12 S 2.786 3.214 13 O -1.000 7.000 14 O -0.979 6.979 15 N -1.117 6.117 16 C 0.164 3.836 17 H 0.080 0.920 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.085 4.085 23 H 0.073 0.927 24 C 0.059 3.941 25 N -0.850 5.850 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.264 0.736 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.330 0.670 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -11.719 -7.082 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.582 4.582 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.194 1.194 12 S 2.794 3.206 13 O -0.984 6.984 14 O -0.963 6.963 15 N -0.877 5.877 16 C 0.056 3.944 17 H 0.097 0.903 18 C -0.176 4.176 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.106 4.106 23 H 0.091 0.909 24 C -0.072 4.072 25 N -0.379 5.379 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.141 0.859 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.871 -12.443 -6.194 15.089 hybrid contribution -0.584 1.404 -1.280 1.988 sum -6.455 -11.039 -7.475 14.812 Atomic orbital electron populations 1.21290 0.80534 1.01712 1.00700 1.57631 1.13915 1.23502 1.88825 1.19214 0.92342 0.78670 0.97556 1.21679 1.31503 1.10919 0.94148 0.91142 1.24963 0.95205 0.96706 0.97017 1.69926 1.31946 1.19266 1.31564 0.86734 0.77980 0.78710 0.85102 1.20421 1.21325 1.19449 1.01719 0.73024 0.72748 0.73141 1.93538 1.70369 1.61911 1.72548 1.93593 1.37334 1.84689 1.80713 1.56110 1.14901 1.82686 1.33961 1.20684 0.86672 0.94476 0.92590 0.90263 1.22056 0.98270 0.95026 1.02243 1.21476 0.98899 0.99260 0.95868 1.21581 1.01209 0.96615 0.96330 1.21462 0.97602 0.93570 1.01738 1.21379 0.99223 0.95524 0.94439 0.90886 1.22065 1.02989 0.93845 0.88264 1.58760 1.44156 1.20954 1.13985 0.93674 0.90882 0.93194 0.94952 0.92709 0.92585 0.75220 0.91456 0.90452 0.92439 0.91749 0.92390 0.92397 0.90739 0.92023 0.94795 0.88895 0.85856 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.16 59.85 0.61 2.32 16 2 N -1.00 -19.88 3.23 -123.06 -0.40 -20.28 16 3 C 0.24 5.95 5.41 -5.20 -0.03 5.92 16 4 C -0.54 -13.60 9.37 -34.44 -0.32 -13.92 16 5 H 0.07 1.62 4.78 -52.49 -0.25 1.36 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 8 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 S 2.79 54.05 6.02 -107.50 -0.65 53.41 16 13 O -1.00 -19.95 16.48 -57.17 -0.94 -20.89 16 14 O -0.98 -22.83 16.57 -57.17 -0.95 -23.78 16 15 N -1.12 -17.47 4.11 -4.89 -0.02 -17.49 16 16 C 0.16 2.17 2.41 -67.93 -0.16 2.01 16 17 H 0.08 1.04 5.59 -51.93 -0.29 0.75 16 18 C -0.14 -1.63 5.64 -26.73 -0.15 -1.78 16 19 C -0.12 -1.30 5.76 -26.73 -0.15 -1.46 16 20 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 21 C -0.11 -1.26 4.91 -26.73 -0.13 -1.39 16 22 C -0.09 -1.04 2.15 -90.62 -0.19 -1.24 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 24 C 0.06 0.86 4.88 -3.82 -0.02 0.84 16 25 N -0.85 -11.26 9.08 -10.37 -0.09 -11.36 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.05 0.70 5.71 -51.93 -0.30 0.40 16 29 H 0.03 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.05 1.50 6.83 -51.93 -0.35 1.15 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.41 6.22 6.86 -34.47 -0.24 5.98 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.04 7.47 -51.93 -0.39 0.65 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.77 7.49 -51.93 -0.39 0.39 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.91 7.75 -51.93 -0.40 0.50 16 40 H 0.06 0.80 6.50 -51.93 -0.34 0.46 16 41 H 0.03 0.53 7.36 -51.93 -0.38 0.14 16 42 H 0.09 1.65 6.96 -51.93 -0.36 1.29 16 43 H 0.33 3.58 8.99 -39.29 -0.35 3.22 16 44 H 0.34 4.78 9.08 -39.29 -0.36 4.42 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -30.75 346.43 -9.83 -40.58 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.91 Total: 12.54 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.81 Total: -8.48 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: 0.22 Total: -73.63 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.89 Total: -44.67 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 54.05 SS G_CDS: -0.65 Total: 53.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.75 -9.83 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.863 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds