Wall clock time and date at job start Fri Apr 10 2020 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99971 * 2 1 4 4 C 1.50698 * 109.47388 * 277.22544 * 3 2 1 5 5 H 1.07993 * 120.00072 * 5.06329 * 4 3 2 6 6 C 1.37879 * 119.99780 * 185.06928 * 4 3 2 7 7 N 1.31519 * 120.00133 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99832 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46668 * 60.00585 * 8 6 4 10 10 H 1.48498 * 109.46907 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47527 * 300.00203 * 8 6 4 12 12 S 1.65606 * 120.00123 * 180.02562 * 2 1 3 13 13 O 1.42093 * 106.40031 * 330.41139 * 12 2 1 14 14 O 1.42095 * 106.39888 * 197.48893 * 12 2 1 15 15 N 1.65596 * 107.21785 * 83.95113 * 12 2 1 16 16 C 1.46503 * 120.00003 * 293.07575 * 15 12 2 17 17 H 1.09001 * 109.46755 * 26.59939 * 16 15 12 18 18 C 1.52998 * 109.47265 * 266.59523 * 16 15 12 19 19 C 1.52996 * 109.47052 * 300.00114 * 18 16 15 20 20 C 1.52998 * 109.47234 * 299.99535 * 19 18 16 21 21 C 1.53010 * 109.46989 * 60.00275 * 20 19 18 22 22 C 1.52996 * 109.46908 * 299.99925 * 21 20 19 23 23 H 1.08992 * 109.47568 * 299.99900 * 22 21 20 24 24 C 1.52998 * 109.47052 * 179.97438 * 22 21 20 25 25 N 1.46901 * 109.47130 * 64.99841 * 24 22 21 26 26 H 1.08992 * 109.46873 * 269.99565 * 1 2 3 27 27 H 1.09000 * 109.47089 * 29.99594 * 1 2 3 28 28 H 1.09001 * 109.47073 * 149.99331 * 1 2 3 29 29 H 1.09001 * 109.46779 * 37.22642 * 3 2 1 30 30 H 1.09005 * 109.47076 * 157.22123 * 3 2 1 31 31 H 0.97001 * 120.00021 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00222 * 113.08161 * 15 12 2 33 33 H 1.09003 * 109.46656 * 179.97438 * 18 16 15 34 34 H 1.08997 * 109.46876 * 60.00313 * 18 16 15 35 35 H 1.09006 * 109.46907 * 180.02562 * 19 18 16 36 36 H 1.08996 * 109.47305 * 60.00286 * 19 18 16 37 37 H 1.08996 * 109.47588 * 300.00578 * 20 19 18 38 38 H 1.08997 * 109.47255 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47144 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.46708 * 59.99764 * 21 20 19 41 41 H 1.08996 * 109.47299 * 185.00109 * 24 22 21 42 42 H 1.09001 * 109.47210 * 304.99928 * 24 22 21 43 43 H 1.00903 * 110.99477 * 56.04790 * 25 24 22 44 44 H 1.00898 * 110.99787 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2939 1.7931 -1.4095 5 1 1.7846 1.2809 -2.2123 6 6 3.0326 2.9269 -1.6741 7 7 3.6534 3.5504 -0.6966 8 14 3.1527 3.5766 -3.4214 9 1 1.7940 3.9090 -3.9204 10 1 3.9981 4.7973 -3.4386 11 1 3.7608 2.5405 -4.2942 12 16 2.2931 -1.4342 -0.0006 13 8 1.4671 -2.3746 0.6720 14 8 3.6196 -1.1317 0.4091 15 7 2.3938 -1.9413 -1.5738 16 6 1.1822 -2.3424 -2.2932 17 1 0.3202 -1.8289 -1.8674 18 6 0.9898 -3.8548 -2.1645 19 6 2.1999 -4.5755 -2.7620 20 6 2.3370 -4.2029 -4.2396 21 6 2.5295 -2.6904 -4.3684 22 6 1.3194 -1.9697 -3.7708 23 1 0.4180 -2.2680 -4.3059 24 6 1.5121 -0.4573 -3.8990 25 7 1.5244 -0.0839 -5.3197 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6704 1.9925 0.6217 30 1 3.1998 1.1096 0.3979 31 1 4.1727 4.3482 -0.8827 32 1 3.2550 -1.9729 -2.0190 33 1 0.0881 -4.1531 -2.6994 34 1 0.8920 -4.1203 -1.1119 35 1 2.0625 -5.6530 -2.6708 36 1 3.1013 -4.2772 -2.2268 37 1 1.4356 -4.5012 -4.7748 38 1 3.1988 -4.7167 -4.6654 39 1 2.6277 -2.4249 -5.4209 40 1 3.4309 -2.3920 -3.8331 41 1 0.6939 0.0572 -3.3951 42 1 2.4585 -0.1714 -3.4400 43 1 0.6839 -0.3959 -5.7827 44 1 1.6508 0.9110 -5.4309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237194727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:25 Heat of formation + Delta-G solvation = -119.658656 kcal Electronic energy + Delta-G solvation = -25982.805622 eV Core-core repulsion = 22480.826861 eV Total energy + Delta-G solvation = -3501.978760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.41098 -38.24214 -37.20198 -36.85499 -35.47949 -34.47023 -34.38828 -31.10843 -30.10130 -29.62717 -26.79716 -25.42086 -24.15431 -23.41506 -21.93106 -20.96203 -19.86067 -18.82814 -18.45546 -18.25344 -17.39085 -16.74658 -16.57075 -16.07025 -15.82261 -15.36129 -15.17918 -15.07427 -14.90055 -14.83231 -14.08890 -13.96697 -13.77732 -13.42618 -13.40734 -13.19923 -13.14761 -12.98494 -12.90331 -12.84271 -12.61826 -12.47839 -12.33797 -12.28202 -11.92272 -11.81657 -11.56226 -11.31696 -11.24040 -10.85806 -10.54896 -10.23050 -9.72980 -9.48620 -8.13823 -6.26462 -0.22858 1.41708 1.46638 1.51230 2.05396 2.43987 2.66602 3.18686 3.48286 3.52450 3.80791 3.86417 3.99745 4.11292 4.27475 4.38562 4.41848 4.57757 4.64556 4.65833 4.70968 4.72231 4.84360 4.88163 4.96569 5.06160 5.12272 5.19917 5.28507 5.30628 5.35092 5.42163 5.46323 5.52388 5.58941 5.69970 5.78398 5.89782 6.14587 6.21336 6.26442 6.68754 6.87222 7.43455 8.94650 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.007711 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.576745 B = 3630.528377 C = 4988.005957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.001 6.001 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.092 0.908 6 C 0.007 3.993 7 N -0.933 5.933 8 Si 0.951 3.049 9 H -0.261 1.261 10 H -0.297 1.297 11 H -0.259 1.259 12 S 2.800 3.200 13 O -1.004 7.004 14 O -1.024 7.024 15 N -1.107 6.107 16 C 0.155 3.845 17 H 0.083 0.917 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.105 4.105 22 C -0.075 4.075 23 H 0.101 0.899 24 C 0.061 3.939 25 N -0.849 5.849 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.416 0.584 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.347 0.653 44 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -13.338 -9.665 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.843 5.843 3 C 0.133 3.867 4 C -0.579 4.579 5 H 0.109 0.891 6 C -0.192 4.192 7 N -0.574 5.574 8 Si 0.776 3.224 9 H -0.186 1.186 10 H -0.223 1.223 11 H -0.184 1.184 12 S 2.808 3.192 13 O -0.987 6.987 14 O -1.008 7.008 15 N -0.870 5.870 16 C 0.048 3.952 17 H 0.101 0.899 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.095 4.095 23 H 0.119 0.881 24 C -0.070 4.070 25 N -0.378 5.378 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.252 0.748 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.160 0.840 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.836 -14.095 -8.787 18.365 hybrid contribution -0.030 1.832 -0.460 1.889 sum -7.866 -12.263 -9.247 17.256 Atomic orbital electron populations 1.21547 0.78242 1.03278 1.01907 1.57499 1.15446 1.21966 1.89341 1.18765 0.90757 0.80066 0.97076 1.22081 1.30558 1.10422 0.94800 0.89050 1.25848 0.95113 0.97294 1.00937 1.70087 1.33415 1.19950 1.33911 0.85702 0.78568 0.77710 0.80388 1.18560 1.22298 1.18396 1.01108 0.71817 0.72438 0.73823 1.93527 1.70192 1.61655 1.73351 1.93530 1.39863 1.85293 1.82136 1.55816 1.16209 1.82139 1.32802 1.21011 0.85407 0.95780 0.93035 0.89914 1.22039 0.99843 0.93647 1.01738 1.21505 0.97853 1.00107 0.96269 1.21524 1.02417 0.95187 0.95799 1.21440 0.96654 0.94836 1.01319 1.21323 1.00600 0.93794 0.93782 0.88121 1.21920 1.00706 0.95514 0.88824 1.58710 1.45296 1.20748 1.13078 0.92753 0.90606 0.90319 0.96645 0.96501 0.92913 0.74784 0.88689 0.92139 0.90966 0.93377 0.90593 0.91712 0.90716 0.93790 0.95685 0.92358 0.83985 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.01 10.16 127.77 1.30 4.31 16 2 N -1.00 -40.16 3.23 -543.24 -1.76 -41.92 16 3 C 0.26 12.94 5.41 85.63 0.46 13.40 16 4 C -0.54 -27.26 9.37 25.60 0.24 -27.02 16 5 H 0.09 4.13 4.78 -2.91 -0.01 4.12 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 8 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 9 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 S 2.80 109.45 6.02 -56.49 -0.34 109.11 16 13 O -1.00 -39.38 16.48 -128.00 -2.11 -41.49 16 14 O -1.02 -49.58 16.57 -128.00 -2.12 -51.70 16 15 N -1.11 -33.95 4.11 -169.37 -0.70 -34.65 16 16 C 0.15 3.73 2.41 44.99 0.11 3.83 16 17 H 0.08 1.94 5.59 -2.39 -0.01 1.92 16 18 C -0.13 -2.77 5.64 30.59 0.17 -2.60 16 19 C -0.12 -2.33 5.76 30.59 0.18 -2.16 16 20 C -0.11 -1.92 5.92 30.60 0.18 -1.73 16 21 C -0.10 -2.21 4.91 30.60 0.15 -2.06 16 22 C -0.07 -1.60 2.15 -10.79 -0.02 -1.62 16 23 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 24 C 0.06 1.66 4.88 86.30 0.42 2.08 16 25 N -0.85 -20.15 9.08 -186.72 -1.70 -21.84 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.08 2.01 5.71 -2.39 -0.01 1.99 16 29 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.02 0.98 6.83 -2.38 -0.02 0.96 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 32 H 0.42 12.55 6.86 -96.75 -0.66 11.89 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.49 7.47 -2.39 -0.02 1.47 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.05 1.09 7.49 -2.39 -0.02 1.07 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.60 7.75 -2.39 -0.02 1.58 16 40 H 0.04 1.08 6.50 -2.39 -0.02 1.06 16 41 H 0.02 0.72 7.36 -2.39 -0.02 0.70 16 42 H 0.06 2.01 6.96 -2.39 -0.02 1.99 16 43 H 0.35 6.28 8.99 -89.69 -0.81 5.47 16 44 H 0.34 8.57 9.08 -89.70 -0.81 7.76 16 Total: -1.00 -67.69 346.43 -4.01 -71.70 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -1.25 Total: 34.69 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 3.65 Total: -12.73 kcal Atomic # 7 Polarization: -148.93 SS G_CDS: -3.86 Total: -152.79 kcal Atomic # 8 Polarization: -88.96 SS G_CDS: -4.23 Total: -93.19 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 109.45 SS G_CDS: -0.34 Total: 109.11 kcal Total: -67.69 -4.01 -71.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237194727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.960 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds