Wall clock time and date at job start Fri Apr 10 2020 17:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38627 * 119.99895 * 2 1 4 4 C 1.39168 * 120.48887 * 0.02562 * 3 2 1 5 5 C 1.39129 * 118.26895 * 179.97438 * 4 3 2 6 6 N 1.38636 * 120.48505 * 179.97438 * 5 4 3 7 7 C 1.47440 * 110.99660 * 59.15813 * 6 5 4 8 8 C 1.54322 * 107.23072 * 123.25605 * 7 6 5 9 9 C 1.55137 * 103.01926 * 22.28676 * 8 7 6 10 10 C 1.47839 * 110.99804 * 180.02562 * 6 5 4 11 11 H 1.08996 * 110.37554 * 332.57688 * 10 6 5 12 12 C 1.53004 * 110.37128 * 94.81199 * 10 6 5 13 13 N 1.46499 * 109.47270 * 304.99379 * 12 10 6 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 10 15 15 O 1.21683 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.46378 * 119.99801 * 179.97438 * 14 13 12 17 17 H 1.08001 * 119.99947 * 0.02562 * 16 14 13 18 18 C 1.40042 * 119.99532 * 180.02562 * 16 14 13 19 19 N 1.30674 * 120.00364 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99822 * 180.27790 * 18 16 14 21 21 H 1.48497 * 109.47322 * 179.72810 * 20 18 16 22 22 H 1.48498 * 109.47165 * 299.72757 * 20 18 16 23 23 H 1.48501 * 109.47099 * 59.72583 * 20 18 16 24 24 N 1.33198 * 119.03232 * 0.25407 * 5 4 3 25 25 C 1.31734 * 120.87548 * 359.47908 * 24 5 4 26 26 N 1.31756 * 121.91566 * 0.53518 * 25 24 5 27 27 H 1.09006 * 109.46787 * 299.99725 * 1 2 3 28 28 H 1.09000 * 109.47214 * 59.99147 * 1 2 3 29 29 H 1.08989 * 109.47406 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99983 * 180.02562 * 2 1 3 31 31 H 1.08000 * 120.86661 * 359.97438 * 4 3 2 32 32 H 1.08994 * 109.89274 * 242.66343 * 7 6 5 33 33 H 1.09004 * 109.88915 * 3.85487 * 7 6 5 34 34 H 1.09001 * 110.70245 * 140.66501 * 8 7 6 35 35 H 1.08994 * 110.70780 * 263.72575 * 8 7 6 36 36 H 1.08996 * 110.99300 * 206.25358 * 9 8 7 37 37 H 1.08998 * 110.99262 * 82.43327 * 9 8 7 38 38 H 1.09006 * 109.47053 * 184.99923 * 12 10 6 39 39 H 1.08997 * 109.46991 * 64.99859 * 12 10 6 40 40 H 0.97000 * 119.99478 * 0.02562 * 13 12 10 41 41 H 0.97005 * 120.00029 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.03789 * 180.26799 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1582 1.2006 0.0000 4 6 1.4726 2.4117 0.0005 5 6 2.2144 3.5887 0.0011 6 7 1.5786 4.8207 0.0011 7 6 0.7088 4.9663 1.1826 8 6 1.1653 6.2354 1.9327 9 6 1.8941 7.0492 0.8313 10 6 2.5622 5.9244 0.0011 11 1 3.4918 5.6044 0.4716 12 6 2.8267 6.4021 -1.4282 13 7 3.2416 5.2655 -2.2541 14 6 3.5291 5.4492 -3.5580 15 8 3.4445 6.5593 -4.0491 16 6 3.9441 4.3135 -4.3830 17 1 4.0196 3.3283 -3.9469 18 6 4.2434 4.5046 -5.7377 19 7 4.1525 5.6967 -6.2651 20 14 4.7656 3.0540 -6.7924 21 1 5.0171 3.5166 -8.1809 22 1 6.0074 2.4592 -6.2363 23 1 3.6874 2.0328 -6.7985 24 7 3.5443 3.5147 -0.0041 25 6 4.1564 2.3482 0.0006 26 7 3.4899 1.2117 0.0001 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0275 -0.0005 30 1 1.9500 -0.8400 -0.0004 31 1 0.3929 2.4372 0.0005 32 1 -0.3291 5.0747 0.8680 33 1 0.8134 4.0954 1.8297 34 1 0.3063 6.7871 2.3148 35 1 1.8485 5.9796 2.7425 36 1 2.6430 7.7111 1.2660 37 1 1.1829 7.6111 0.2258 38 1 3.6170 7.1528 -1.4200 39 1 1.9163 6.8375 -1.8401 40 1 3.3086 4.3805 -1.8627 41 1 4.3602 5.8291 -7.2034 42 1 5.2362 2.3228 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274681485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:28 Heat of formation + Delta-G solvation = 8.615908 kcal Electronic energy + Delta-G solvation = -25710.552954 eV Core-core repulsion = 22110.985396 eV Total energy + Delta-G solvation = -3599.567558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30945 -40.25002 -39.05211 -37.24529 -35.24041 -34.54287 -34.40873 -32.45060 -31.03067 -30.48867 -28.48982 -27.55199 -26.02966 -24.66044 -23.80514 -22.28133 -21.58301 -21.15919 -19.35691 -19.17616 -18.69147 -17.56409 -17.02797 -16.45372 -16.30406 -16.15945 -15.93019 -15.85742 -15.72384 -15.49895 -15.12144 -14.65121 -14.55460 -14.33290 -14.04631 -13.42372 -13.24669 -13.13006 -13.03162 -12.82268 -12.72143 -12.65740 -12.23339 -12.14588 -12.06040 -11.94711 -11.71213 -11.53558 -11.04311 -10.95190 -10.20046 -9.88436 -9.50561 -9.37227 -9.09262 -8.30877 -6.88090 0.14071 0.43457 1.33322 1.37963 1.49399 2.08775 2.21643 2.43776 2.47833 2.93054 3.18161 3.28719 3.59648 3.62896 3.68674 3.85186 4.02505 4.09038 4.19597 4.36325 4.38946 4.42086 4.53772 4.58972 4.62888 4.71209 4.74547 4.79554 4.91268 4.94297 5.01587 5.11027 5.20363 5.25003 5.32548 5.51839 5.78051 5.86113 6.07902 6.23052 6.30062 6.36549 6.67453 6.83238 7.36537 7.59481 8.49165 8.66332 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.005656 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.889637 B = 4949.704099 C = 6800.140272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.710 5.710 3 C 0.437 3.563 4 C -0.312 4.312 5 C 0.366 3.634 6 N -0.477 5.477 7 C 0.049 3.951 8 C -0.125 4.125 9 C -0.120 4.120 10 C 0.071 3.929 11 H 0.090 0.910 12 C 0.152 3.848 13 N -0.748 5.748 14 C 0.536 3.464 15 O -0.634 6.634 16 C -0.574 4.574 17 H 0.067 0.933 18 C 0.032 3.968 19 N -0.819 5.819 20 Si 0.994 3.006 21 H -0.265 1.265 22 H -0.254 1.254 23 H -0.258 1.258 24 N -0.613 5.613 25 C 0.354 3.646 26 N -0.608 5.608 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.414 0.586 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.391 0.609 41 H 0.276 0.724 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -10.347 19.714 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.342 5.342 3 C 0.193 3.807 4 C -0.343 4.343 5 C 0.131 3.869 6 N -0.194 5.194 7 C -0.075 4.075 8 C -0.163 4.163 9 C -0.158 4.158 10 C -0.036 4.036 11 H 0.108 0.892 12 C 0.026 3.974 13 N -0.405 5.405 14 C 0.340 3.660 15 O -0.522 6.522 16 C -0.611 4.611 17 H 0.086 0.914 18 C -0.183 4.183 19 N -0.448 5.448 20 Si 0.813 3.187 21 H -0.189 1.189 22 H -0.178 1.178 23 H -0.182 1.182 24 N -0.340 5.340 25 C 0.064 3.936 26 N -0.335 5.335 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.250 0.750 31 H 0.173 0.827 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.228 0.772 41 H 0.086 0.914 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -8.614 -9.349 18.809 22.702 hybrid contribution 0.155 -0.967 -0.271 1.016 sum -8.459 -10.316 18.538 22.839 Atomic orbital electron populations 1.21890 0.76689 1.05058 1.01920 1.44364 1.07237 1.04271 1.78300 1.18610 0.88259 0.87533 0.86252 1.21515 1.02366 0.90623 1.19783 1.20133 0.88451 0.91153 0.87210 1.60365 1.19566 0.99793 1.39720 1.23081 0.97420 0.99565 0.87452 1.22757 1.01748 0.94781 0.97023 1.22775 1.00277 0.96275 0.96494 1.22862 0.95614 0.90511 0.94616 0.89231 1.20912 0.97130 0.89411 0.89906 1.45957 1.73653 1.11120 1.09754 1.18578 0.77034 0.89355 0.81081 1.90515 1.59924 1.27960 1.73790 1.21224 1.49762 0.94445 0.95646 0.91449 1.26915 0.92486 0.99733 0.99197 1.70175 1.36238 1.24824 1.13549 0.85143 0.79722 0.77113 0.76733 1.18931 1.17822 1.18247 1.68256 1.10010 1.30849 1.24839 1.24892 1.01323 0.81121 0.86308 1.68009 1.07293 1.32359 1.25880 0.91391 0.92926 0.87138 0.74975 0.82733 0.88120 0.90939 0.87292 0.90294 0.88485 0.90323 0.94397 0.95174 0.77194 0.91429 0.77076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.95 127.77 1.27 2.32 16 2 N -0.71 -13.38 5.87 -366.24 -2.15 -15.53 16 3 C 0.44 11.79 7.70 132.97 1.02 12.81 16 4 C -0.31 -8.65 8.34 22.71 0.19 -8.46 16 5 C 0.37 11.70 4.93 132.95 0.65 12.36 16 6 N -0.48 -14.43 4.74 -667.79 -3.17 -17.59 16 7 C 0.05 0.99 6.47 86.65 0.56 1.55 16 8 C -0.13 -2.02 6.94 31.78 0.22 -1.80 16 9 C -0.12 -2.68 6.50 31.99 0.21 -2.47 16 10 C 0.07 2.28 2.55 45.40 0.12 2.40 16 11 H 0.09 3.01 6.60 -2.39 -0.02 2.99 16 12 C 0.15 6.74 5.46 86.38 0.47 7.21 16 13 N -0.75 -39.42 5.40 -467.40 -2.52 -41.94 16 14 C 0.54 34.62 7.75 86.36 0.67 35.29 16 15 O -0.63 -45.82 15.02 -4.29 -0.06 -45.88 16 16 C -0.57 -36.06 9.54 24.83 0.24 -35.83 16 17 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 18 C 0.03 1.91 5.50 85.30 0.47 2.38 16 19 N -0.82 -52.86 11.83 21.83 0.26 -52.60 16 20 Si 0.99 43.99 29.56 68.60 2.03 46.01 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 N -0.61 -20.76 6.47 -197.83 -1.28 -22.04 16 25 C 0.35 10.90 12.28 180.91 2.22 13.12 16 26 N -0.61 -18.14 10.47 -197.82 -2.07 -20.21 16 27 H 0.07 0.69 7.97 -2.38 -0.02 0.67 16 28 H 0.05 0.75 7.97 -2.39 -0.02 0.73 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.41 6.71 8.95 -92.71 -0.83 5.88 16 31 H 0.16 3.58 6.81 -2.91 -0.02 3.56 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.33 7.15 -2.38 -0.02 1.31 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.82 7.97 -2.39 -0.02 1.80 16 38 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.03 1.42 8.03 -2.39 -0.02 1.41 16 40 H 0.39 19.23 4.80 -92.71 -0.45 18.79 16 41 H 0.28 16.02 8.29 -92.70 -0.77 15.25 16 42 H 0.21 5.31 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -88.49 343.89 -0.87 -89.36 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.22 Total: 39.55 kcal Atomic # 6 Polarization: 32.57 SS G_CDS: 8.31 Total: 40.88 kcal Atomic # 7 Polarization: -158.99 SS G_CDS: -10.93 Total: -169.92 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.06 Total: -45.88 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -88.49 -0.87 -89.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274681485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.980 kcal (2) G-P(sol) polarization free energy of solvation -88.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds