Wall clock time and date at job start Fri Apr 10 2020 17:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47012 * 8.83448 * 3 2 1 5 5 C 1.37098 * 119.99687 * 269.99530 * 4 3 2 6 6 H 1.07997 * 119.99789 * 189.64250 * 5 4 3 7 7 C 1.38953 * 120.00226 * 9.64134 * 5 4 3 8 8 N 1.31409 * 119.99601 * 24.98803 * 7 5 4 9 9 Si 1.86793 * 120.00163 * 204.99053 * 7 5 4 10 10 H 1.48500 * 109.47375 * 89.99604 * 9 7 5 11 11 H 1.48505 * 109.47080 * 210.00034 * 9 7 5 12 12 H 1.48501 * 109.47217 * 330.00006 * 9 7 5 13 13 C 1.34779 * 120.00250 * 90.00358 * 4 3 2 14 14 O 1.21289 * 119.99842 * 4.98507 * 13 4 3 15 15 C 1.50695 * 119.99990 * 184.99329 * 13 4 3 16 16 H 1.08998 * 109.47018 * 319.20667 * 15 13 4 17 17 C 1.53003 * 109.47274 * 79.20766 * 15 13 4 18 18 N 1.46499 * 109.47195 * 199.21101 * 15 13 4 19 19 C 1.34777 * 120.00436 * 154.99596 * 18 15 13 20 20 O 1.21704 * 119.99549 * 0.02562 * 19 18 15 21 21 C 1.46579 * 120.00164 * 179.97438 * 19 18 15 22 22 C 1.36643 * 125.45684 * 180.02562 * 21 19 18 23 23 C 1.37476 * 113.29805 * 180.02562 * 22 21 19 24 24 C 1.33819 * 115.10128 * 359.97438 * 23 22 21 25 25 S 1.70625 * 110.95218 * 359.73227 * 24 23 22 26 26 H 4.40637 * 5.51422 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47220 * 248.82853 * 3 2 1 28 28 H 1.09008 * 109.46883 * 128.83135 * 3 2 1 29 29 H 0.97005 * 119.99887 * 184.63213 * 8 7 5 30 30 H 1.08994 * 109.46949 * 65.52646 * 17 15 13 31 31 H 1.09004 * 109.46502 * 185.52323 * 17 15 13 32 32 H 1.08997 * 109.46933 * 305.52215 * 17 15 13 33 33 H 0.97005 * 119.99815 * 334.99896 * 18 15 13 34 34 H 1.07997 * 123.35373 * 359.97438 * 22 21 19 35 35 H 1.07993 * 122.45287 * 180.02562 * 23 22 21 36 36 H 1.07995 * 124.52723 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3640 -0.2121 5 6 3.3638 -2.1848 0.8619 6 1 3.8681 -3.1294 0.7217 7 6 2.9470 -1.8012 2.1307 8 7 1.9489 -0.9575 2.2673 9 14 3.8056 -2.4850 3.6422 10 1 4.9346 -1.5954 4.0152 11 1 2.8406 -2.5589 4.7686 12 1 4.3241 -3.8443 3.3446 13 6 3.3598 -1.8125 -1.4631 14 8 3.2446 -1.0597 -2.4070 15 6 3.7542 -3.2493 -1.6888 16 1 4.4643 -3.5560 -0.9209 17 6 2.5101 -4.1370 -1.6170 18 7 4.3745 -3.3837 -3.0092 19 6 5.2376 -4.3907 -3.2490 20 8 5.5013 -5.1886 -2.3687 21 6 5.8577 -4.5255 -4.5703 22 6 6.7439 -5.4998 -4.9343 23 6 7.1696 -5.3885 -6.2368 24 6 6.6509 -4.3599 -6.9176 25 16 5.5746 -3.4638 -5.9430 26 1 -1.0498 -0.0004 -0.0002 27 1 3.0091 0.3720 0.9583 28 1 3.0090 0.6453 -0.8006 29 1 1.7014 -0.6377 3.1490 30 1 1.8435 -3.8960 -2.4449 31 1 2.8067 -5.1839 -1.6822 32 1 1.9942 -3.9636 -0.6726 33 1 4.1640 -2.7479 -3.7109 34 1 7.0773 -6.2792 -4.2653 35 1 7.8707 -6.0811 -6.6785 36 1 6.8792 -4.1304 -7.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282103221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:57 Heat of formation + Delta-G solvation = 17.688866 kcal Electronic energy + Delta-G solvation = -22323.149486 eV Core-core repulsion = 18900.883724 eV Total energy + Delta-G solvation = -3422.265762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39084 -40.26908 -38.42311 -37.24414 -35.92947 -33.78734 -33.48629 -32.17663 -30.30445 -28.44277 -26.84758 -26.19226 -24.58274 -22.32986 -21.20215 -20.52650 -19.83424 -19.59096 -18.37257 -17.88656 -17.13571 -16.73452 -16.42347 -16.34450 -16.09328 -15.92043 -15.52586 -14.78449 -14.74989 -14.39464 -13.89885 -13.88704 -13.67436 -13.58944 -13.45604 -13.21814 -13.08336 -12.82661 -12.71052 -12.32802 -12.11229 -11.88425 -11.28482 -11.22451 -11.21661 -10.61976 -10.53402 -10.22319 -9.97463 -9.83927 -9.54663 -8.34100 -5.92990 -0.48408 0.49527 0.97438 1.36724 1.42645 1.49222 1.58031 1.76081 1.82019 2.14005 2.21875 2.34074 2.42585 3.01327 3.08271 3.73125 3.90784 4.08251 4.15378 4.18513 4.23746 4.37188 4.56974 4.62566 4.75927 4.81502 4.92834 5.04119 5.11854 5.22801 5.26149 5.39141 5.39704 5.43637 5.63224 6.29106 6.39101 7.01023 7.02744 7.14882 7.40583 7.79046 8.62614 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.003948 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.077619 B = 7090.936639 C = 8026.626051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.146 4.146 3 C 0.240 3.760 4 N -0.432 5.432 5 C -0.368 4.368 6 H 0.108 0.892 7 C 0.012 3.988 8 N -0.860 5.860 9 Si 0.976 3.024 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.443 3.557 14 O -0.625 6.625 15 C 0.149 3.851 16 H 0.096 0.904 17 C -0.137 4.137 18 N -0.703 5.703 19 C 0.587 3.413 20 O -0.570 6.570 21 C -0.303 4.303 22 C -0.053 4.053 23 C -0.157 4.157 24 C -0.213 4.213 25 S 0.215 5.785 26 H 0.234 0.766 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.273 0.727 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.408 0.592 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.312 -5.128 -13.482 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.147 4.147 3 C 0.118 3.882 4 N -0.148 5.148 5 C -0.494 4.494 6 H 0.125 0.875 7 C -0.194 4.194 8 N -0.496 5.496 9 Si 0.800 3.200 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.232 3.768 14 O -0.514 6.514 15 C 0.041 3.959 16 H 0.113 0.887 17 C -0.196 4.196 18 N -0.355 5.355 19 C 0.376 3.624 20 O -0.452 6.452 21 C -0.423 4.423 22 C -0.088 4.088 23 C -0.187 4.187 24 C -0.351 4.351 25 S 0.482 5.518 26 H 0.251 0.749 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.382 -3.933 -13.360 14.930 hybrid contribution 0.722 -1.090 1.124 1.724 sum 6.104 -5.023 -12.236 14.567 Atomic orbital electron populations 1.25074 0.96274 1.00495 1.05101 1.23322 0.94907 0.99826 0.96654 1.18058 0.84858 0.84192 1.01075 1.43854 1.54583 1.11402 1.04976 1.19944 1.38495 1.05055 0.85897 0.87464 1.25904 0.94500 0.97739 1.01227 1.70289 1.21452 1.32502 1.25310 0.85192 0.78134 0.79131 0.77581 1.19812 1.20895 1.18993 1.20339 0.83956 0.89706 0.82766 1.90484 1.60709 1.58330 1.41877 1.20459 0.96877 0.93046 0.85487 0.88667 1.21841 0.95851 0.99034 1.02831 1.45731 1.45016 1.30322 1.14438 1.17368 0.77850 0.80418 0.86811 1.90779 1.63895 1.43790 1.46743 1.24495 1.11841 1.07335 0.98635 1.21061 0.93664 0.96919 0.97111 1.20277 1.04492 1.00978 0.92937 1.25828 1.02462 1.00236 1.06569 1.83324 1.40809 1.27970 0.99709 0.74920 0.88430 0.91046 0.91666 0.92183 0.91114 0.91207 0.75518 0.83073 0.80689 0.77918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.76 19.25 74.32 1.43 -9.33 16 2 C -0.15 -6.98 11.42 31.13 0.36 -6.63 16 3 C 0.24 11.60 5.21 84.57 0.44 12.04 16 4 N -0.43 -21.37 2.58 -645.41 -1.67 -23.04 16 5 C -0.37 -18.12 8.48 84.04 0.71 -17.40 16 6 H 0.11 5.18 5.97 -2.91 -0.02 5.16 16 7 C 0.01 0.57 4.88 84.93 0.41 0.98 16 8 N -0.86 -42.70 9.17 21.66 0.20 -42.50 16 9 Si 0.98 38.83 29.62 68.60 2.03 40.86 16 10 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 11 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 13 C 0.44 21.11 6.88 87.66 0.60 21.71 16 14 O -0.63 -31.33 15.47 -3.06 -0.05 -31.38 16 15 C 0.15 6.27 2.18 44.24 0.10 6.36 16 16 H 0.10 4.27 5.91 -2.39 -0.01 4.25 16 17 C -0.14 -5.29 9.41 71.98 0.68 -4.61 16 18 N -0.70 -26.28 5.03 -450.17 -2.27 -28.55 16 19 C 0.59 21.27 7.75 86.42 0.67 21.94 16 20 O -0.57 -23.98 16.50 -4.36 -0.07 -24.05 16 21 C -0.30 -8.54 6.45 24.07 0.16 -8.39 16 22 C -0.05 -1.24 10.01 21.72 0.22 -1.02 16 23 C -0.16 -2.55 10.15 21.08 0.21 -2.34 16 24 C -0.21 -3.17 10.92 66.81 0.73 -2.44 16 25 S 0.21 4.52 22.16 -56.49 -1.25 3.26 16 26 H 0.23 7.76 7.80 -4.43 -0.03 7.72 16 27 H 0.10 4.77 6.39 -2.39 -0.02 4.76 16 28 H 0.07 3.35 7.36 -2.38 -0.02 3.33 16 29 H 0.27 12.91 8.32 -92.70 -0.77 12.14 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.07 2.89 7.45 -2.39 -0.02 2.87 16 33 H 0.41 14.54 6.85 -92.70 -0.63 13.91 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -63.33 331.35 4.13 -59.19 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.49 Total: 35.32 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 6.72 Total: 10.87 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -3.74 Total: -94.09 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.12 Total: -55.43 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.25 Total: 3.26 kcal Total: -63.33 4.13 -59.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282103221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.883 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds