Wall clock time and date at job start Fri Apr 10 2020 17:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47303 * 270.00221 * 3 2 1 5 5 H 1.48504 * 109.46572 * 30.00010 * 3 2 1 6 6 H 1.48498 * 109.47066 * 149.99880 * 3 2 1 7 7 C 1.37878 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99945 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46869 * 300.00520 * 9 7 2 11 11 O 1.42894 * 109.46637 * 59.99929 * 9 7 2 12 12 C 1.52993 * 109.46947 * 180.02562 * 9 7 2 13 13 N 1.46504 * 109.46909 * 179.97438 * 12 9 7 14 14 C 1.34519 * 124.46044 * 270.02224 * 13 12 9 15 15 O 1.21446 * 125.71232 * 0.02562 * 14 13 12 16 16 C 1.47816 * 108.57861 * 179.97438 * 14 13 12 17 17 C 1.38564 * 134.29561 * 179.97438 * 16 14 13 18 18 C 1.38620 * 119.71862 * 180.02562 * 17 16 14 19 19 C 1.38226 * 120.45668 * 359.93708 * 18 17 16 20 20 C 1.38615 * 120.46165 * 0.03238 * 19 18 17 21 21 N 1.48014 * 120.13806 * 180.02562 * 20 19 18 22 22 O 1.21798 * 120.00541 * 359.97438 * 21 20 19 23 23 O 1.21808 * 119.99789 * 180.02562 * 21 20 19 24 24 C 1.38562 * 119.72077 * 0.02562 * 20 19 18 25 25 C 1.34528 * 124.45681 * 89.99991 * 13 12 9 26 26 O 1.21441 * 125.71240 * 0.04177 * 25 13 12 27 27 H 0.97003 * 119.99731 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00431 * 60.00518 * 11 9 7 29 29 H 1.08991 * 109.47315 * 59.99992 * 12 9 7 30 30 H 1.09000 * 109.47094 * 299.99680 * 12 9 7 31 31 H 1.07998 * 120.14620 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.76904 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.77132 * 180.30656 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5745 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 7 1.5128 -4.9308 0.0001 14 6 1.1323 -5.5894 1.1095 15 8 1.3378 -5.2319 2.2518 16 6 0.4209 -6.8206 0.7056 17 6 -0.1800 -7.8614 1.3952 18 6 -0.7777 -8.8965 0.6931 19 6 -0.7791 -8.8962 -0.6892 20 6 -0.1825 -7.8614 -1.3924 21 7 -0.1887 -7.8681 -2.8725 22 8 -0.7184 -8.7844 -3.4752 23 8 0.3368 -6.9576 -3.4878 24 6 0.4199 -6.8207 -0.7039 25 6 1.1319 -5.5903 -1.1089 26 8 1.3381 -5.2342 -2.2514 27 1 -0.4850 0.8401 0.0004 28 1 0.9209 -2.5290 -1.9983 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6043 -0.8905 31 1 -0.1828 -7.8663 2.4752 32 1 -1.2459 -9.7083 1.2297 33 1 -1.2523 -9.7058 -1.2251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287264831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:03 Heat of formation + Delta-G solvation = -56.682157 kcal Electronic energy + Delta-G solvation = -25037.094388 eV Core-core repulsion = 21033.017691 eV Total energy + Delta-G solvation = -4004.076697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.68913 -41.86299 -38.97919 -38.49958 -36.54627 -36.18395 -35.34774 -32.44615 -32.39438 -32.16973 -29.00933 -26.94457 -25.62855 -25.28660 -23.11721 -22.56850 -21.38761 -20.33355 -18.80293 -18.50837 -17.83364 -17.62633 -17.47737 -16.62101 -16.49918 -16.14609 -15.17695 -15.08694 -14.68108 -14.66018 -14.18991 -13.86014 -13.73707 -13.43419 -13.15993 -12.87747 -12.83944 -11.57074 -11.42727 -11.39663 -11.22130 -11.07131 -11.00138 -10.89057 -10.59236 -10.25288 -10.18450 -10.17103 -10.04796 -9.95554 -9.01617 -8.67954 -8.21390 -6.10263 -4.30753 -0.61935 -0.34194 1.03130 1.16022 1.69761 2.39052 2.91551 3.02251 3.14666 3.24947 3.31879 3.34118 3.80613 4.04278 4.21490 4.25455 4.33156 4.44236 4.65844 5.00011 5.17491 5.23373 5.33439 5.56697 5.64442 5.71175 5.93566 6.14171 6.23454 6.49006 6.79445 7.24365 7.51806 7.57463 7.69665 7.76468 8.00086 8.70695 9.27401 9.46473 10.94289 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.021472 B = 0.004321 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.711727 B = 6479.158496 C = 7322.414726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.082 3.918 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.576 4.576 8 H 0.061 0.939 9 C 0.219 3.781 10 H 0.061 0.939 11 O -0.561 6.561 12 C 0.080 3.920 13 N -0.556 5.556 14 C 0.573 3.427 15 O -0.453 6.453 16 C -0.129 4.129 17 C -0.006 4.006 18 C -0.098 4.098 19 C -0.044 4.044 20 C 0.015 3.985 21 N 0.013 4.987 22 O -0.173 6.173 23 O -0.096 6.096 24 C -0.071 4.071 25 C 0.561 3.439 26 O -0.401 6.401 27 H 0.263 0.737 28 H 0.352 0.648 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -19.904 2.579 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.125 4.125 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.614 4.614 8 H 0.079 0.921 9 C 0.160 3.840 10 H 0.079 0.921 11 O -0.365 6.365 12 C -0.038 4.038 13 N -0.297 5.297 14 C 0.359 3.641 15 O -0.324 6.324 16 C -0.133 4.133 17 C -0.025 4.025 18 C -0.117 4.117 19 C -0.063 4.063 20 C -0.069 4.069 21 N 0.536 4.464 22 O -0.382 6.382 23 O -0.323 6.323 24 C -0.076 4.076 25 C 0.346 3.654 26 O -0.267 6.267 27 H 0.072 0.928 28 H 0.197 0.803 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.296 -19.410 3.729 19.807 hybrid contribution 0.817 0.994 -0.677 1.454 sum -0.479 -18.416 3.052 18.673 Atomic orbital electron populations 1.70080 1.06064 1.26769 1.46164 1.25017 0.94730 0.99320 0.93445 0.86565 0.79869 0.82991 0.78340 1.20344 1.21049 1.19679 1.21427 0.93258 0.90726 1.55966 0.92098 1.19732 0.88244 0.89053 0.86944 0.92101 1.86554 1.38338 1.96121 1.15447 1.23182 0.96446 0.80004 1.04172 1.46702 1.52280 1.23956 1.06778 1.18003 0.78253 0.82827 0.84986 1.90828 1.52336 1.70073 1.19150 1.20898 1.02150 0.97861 0.92430 1.21254 0.89602 0.89448 1.02157 1.21462 0.98692 0.99119 0.92396 1.21311 0.94084 0.96028 0.94878 1.20770 1.06909 0.98494 0.80693 1.43586 0.99449 1.00496 1.02862 1.94512 1.45868 1.28934 1.68858 1.94795 1.42493 1.27276 1.67764 1.20715 0.96742 0.95057 0.95104 1.17833 0.79470 0.82799 0.85345 1.90916 1.49023 1.68327 1.18393 0.92767 0.80336 0.88674 0.89010 0.82142 0.81888 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.13 12.84 55.43 0.71 -24.42 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.58 -15.35 8.76 -34.44 -0.30 -15.66 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.22 5.43 3.09 -27.88 -0.09 5.35 16 10 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 11 O -0.56 -14.53 12.06 -35.23 -0.42 -14.95 16 12 C 0.08 1.59 5.37 -4.04 -0.02 1.57 16 13 N -0.56 -10.01 2.55 -117.63 -0.30 -10.31 16 14 C 0.57 9.37 8.02 -12.46 -0.10 9.27 16 15 O -0.45 -8.28 17.68 5.41 0.10 -8.18 16 16 C -0.13 -1.60 6.40 -104.83 -0.67 -2.27 16 17 C -0.01 -0.04 10.09 -39.32 -0.40 -0.44 16 18 C -0.10 -0.52 10.04 -39.44 -0.40 -0.92 16 19 C -0.04 -0.34 9.56 -39.45 -0.38 -0.72 16 20 C 0.01 0.18 6.88 -79.69 -0.55 -0.36 16 21 N 0.01 0.20 4.45 34.09 0.15 0.35 16 22 O -0.17 -2.47 18.46 -29.46 -0.54 -3.01 16 23 O -0.10 -1.71 15.77 -36.97 -0.58 -2.29 16 24 C -0.07 -1.01 6.14 -104.83 -0.64 -1.66 16 25 C 0.56 9.94 7.43 -12.46 -0.09 9.85 16 26 O -0.40 -7.95 14.61 -18.30 -0.27 -8.22 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.35 8.47 9.04 45.56 0.41 8.88 16 29 H 0.09 1.79 7.96 -51.93 -0.41 1.38 16 30 H 0.09 1.73 7.97 -51.93 -0.41 1.32 16 31 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.16 0.20 8.06 -52.49 -0.42 -0.23 16 33 H 0.17 0.89 7.62 -52.48 -0.40 0.49 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -33.91 309.36 -6.87 -40.78 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -1.62 Total: 3.57 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -3.73 Total: 6.17 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.56 Total: -34.38 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.72 Total: -36.66 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.91 -6.87 -40.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287264831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.901 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds