Wall clock time and date at job start Fri Apr 10 2020 17:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48502 * 109.46877 * 270.00151 * 3 2 1 5 5 H 1.48495 * 109.46872 * 30.00017 * 3 2 1 6 6 H 1.48502 * 109.47075 * 149.99848 * 3 2 1 7 7 C 1.37871 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99878 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42898 * 113.28019 * 313.06673 * 9 7 2 11 11 C 1.53495 * 114.20731 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98945 * 220.14791 * 11 9 7 13 13 C 1.34770 * 136.06104 * 207.09371 * 12 11 9 14 14 O 1.21596 * 120.00407 * 5.49311 * 13 12 11 15 15 C 1.47535 * 120.00050 * 185.50455 * 13 12 11 16 16 C 1.39241 * 120.23070 * 24.15944 * 15 13 12 17 17 C 1.38653 * 120.25372 * 179.72899 * 16 15 13 18 18 F 1.35100 * 119.62891 * 180.28138 * 17 16 15 19 19 C 1.37827 * 120.73779 * 0.29680 * 17 16 15 20 20 C 1.40073 * 120.13874 * 359.97438 * 19 17 16 21 21 N 1.35404 * 133.00353 * 179.97438 * 20 19 17 22 22 N 1.28656 * 110.11907 * 180.02562 * 21 20 19 23 23 N 1.40240 * 109.43467 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.66671 * 179.97438 * 23 22 21 25 25 C 1.37045 * 106.66304 * 0.02562 * 23 22 21 26 26 C 1.47072 * 87.87970 * 27.34376 * 12 11 9 27 27 H 0.97000 * 120.00137 * 0.02562 * 1 2 3 28 28 H 0.96694 * 114.00028 * 46.93394 * 10 9 7 29 29 H 1.09007 * 113.46361 * 105.36890 * 11 9 7 30 30 H 1.08999 * 113.52336 * 334.93810 * 11 9 7 31 31 H 1.08004 * 119.87509 * 0.02562 * 16 15 13 32 32 H 1.08008 * 119.93013 * 179.97438 * 19 17 16 33 33 H 1.08999 * 113.46743 * 87.44185 * 26 12 11 34 34 H 1.09010 * 113.46442 * 217.87794 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 4.0767 -0.2979 -0.9578 11 6 4.1410 -2.5940 0.0023 12 7 5.1441 -2.0856 0.9500 13 6 6.4182 -2.3875 1.2693 14 8 7.0238 -3.2244 0.6280 15 6 7.0781 -1.7026 2.3972 16 6 6.3171 -1.1497 3.4238 17 6 6.9370 -0.5109 4.4868 18 9 6.1866 0.0161 5.4789 19 6 8.3102 -0.4072 4.5424 20 6 9.0985 -0.9499 3.5197 21 7 10.4356 -0.9984 3.3111 22 7 10.6897 -1.6135 2.2100 23 7 9.4868 -2.0182 1.6133 24 1 9.3884 -2.5003 0.7773 25 6 8.4774 -1.5992 2.4401 26 6 4.1429 -1.1070 1.4004 27 1 -0.4850 0.8400 -0.0004 28 1 3.6781 0.5831 -0.9556 29 1 4.5610 -2.8818 -0.9615 30 1 3.4935 -3.3617 0.4259 31 1 5.2399 -1.2230 3.3944 32 1 8.7795 0.0936 5.3764 33 1 3.4953 -1.4819 2.1929 34 1 4.5647 -0.1278 1.6278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328655268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:19 Heat of formation + Delta-G solvation = 44.686694 kcal Electronic energy + Delta-G solvation = -24834.384691 eV Core-core repulsion = 20879.369218 eV Total energy + Delta-G solvation = -3955.015473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.091 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.16807 -42.43722 -40.24711 -38.22631 -37.17606 -34.82671 -33.76975 -32.69212 -31.38689 -30.03583 -28.98285 -26.00892 -25.68404 -24.71522 -23.27147 -22.76546 -20.79123 -19.52622 -18.58470 -18.20266 -17.63954 -17.07760 -16.68682 -16.40331 -16.26820 -15.79482 -15.52866 -15.45458 -15.01365 -14.27509 -13.92039 -13.77076 -13.59033 -13.30442 -12.92609 -12.60167 -12.55175 -12.42484 -12.30490 -11.91842 -11.49232 -11.48210 -11.36208 -11.10661 -10.72164 -10.26681 -10.15636 -9.50692 -9.27948 -9.22944 -8.87357 -8.72649 -8.34154 -6.55782 -4.63468 -0.19456 0.74327 1.62338 2.12021 2.65276 2.88896 2.89150 2.94420 3.06228 3.28968 3.48986 3.89690 3.90164 4.24734 4.33999 4.45376 4.47750 4.58429 4.86794 4.91418 5.18541 5.32600 5.44998 5.51263 5.54762 5.75191 5.88283 5.95762 6.11126 6.16155 6.22630 6.37879 6.66159 7.01750 7.60347 7.85566 7.91564 8.14745 8.33120 8.47861 9.00697 10.56027 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.004718 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.014072 B = 5932.973399 C = 6680.205332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.083 3.917 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.537 4.537 8 H 0.095 0.905 9 C 0.199 3.801 10 O -0.549 6.549 11 C 0.123 3.877 12 N -0.624 5.624 13 C 0.582 3.418 14 O -0.557 6.557 15 C -0.092 4.092 16 C -0.065 4.065 17 C 0.085 3.915 18 F -0.125 7.125 19 C -0.051 4.051 20 C -0.003 4.003 21 N -0.212 5.212 22 N 0.007 4.993 23 N -0.472 5.472 24 H 0.459 0.541 25 C 0.127 3.873 26 C 0.049 3.951 27 H 0.273 0.727 28 H 0.353 0.647 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.103 0.897 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 0.118 7.842 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.123 4.123 3 Si 0.685 3.315 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.574 4.574 8 H 0.113 0.887 9 C 0.158 3.842 10 O -0.361 6.361 11 C 0.001 3.999 12 N -0.355 5.355 13 C 0.372 3.628 14 O -0.438 6.438 15 C -0.100 4.100 16 C -0.088 4.088 17 C 0.062 3.938 18 F -0.104 7.104 19 C -0.075 4.075 20 C -0.127 4.127 21 N -0.092 5.092 22 N 0.025 4.975 23 N -0.195 5.195 24 H 0.308 0.692 25 C 0.002 3.998 26 C -0.074 4.074 27 H 0.083 0.917 28 H 0.206 0.794 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.120 0.880 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.671 -0.712 7.370 15.547 hybrid contribution -1.263 1.218 -0.078 1.756 sum 12.408 0.506 7.292 14.401 Atomic orbital electron populations 1.69839 1.06041 1.27857 1.46808 1.24994 0.94929 0.98952 0.93464 0.87360 0.80273 0.84491 0.79357 1.19156 1.20736 1.18337 1.21101 0.87066 0.95884 1.53395 0.88728 1.20238 0.92568 0.87337 0.84050 1.86471 1.64436 1.25091 1.60119 1.23276 0.86099 0.97870 0.92607 1.49585 1.09483 1.36623 1.39800 1.17273 0.80665 0.82002 0.82900 1.90731 1.64149 1.35336 1.53557 1.18763 0.88983 1.04355 0.97885 1.21635 1.02039 0.93722 0.91357 1.16944 0.88300 1.00514 0.87996 1.91571 1.75669 1.84287 1.58847 1.20345 0.90808 0.98299 0.98020 1.19425 0.89828 1.06303 0.97176 1.74901 1.12761 1.12519 1.08987 1.81606 1.04153 1.09529 1.02252 1.47829 1.03166 1.46232 1.22316 0.69162 1.18990 0.90281 0.98056 0.92521 1.24809 0.87680 0.91729 1.03167 0.91654 0.79376 0.90513 0.88085 0.82064 0.82503 0.87958 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.04 13.96 55.43 0.77 -22.27 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.86 17.77 24.42 -169.99 -4.15 13.62 16 4 H -0.27 -5.42 7.06 56.52 0.40 -5.02 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.26 -4.97 5.50 56.52 0.31 -4.66 16 7 C -0.54 -12.77 9.28 -34.44 -0.32 -13.09 16 8 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.20 4.13 1.10 -91.13 -0.10 4.03 16 10 O -0.55 -12.08 13.33 -35.23 -0.47 -12.55 16 11 C 0.12 2.27 8.03 -8.52 -0.07 2.20 16 12 N -0.62 -10.98 3.64 -186.30 -0.68 -11.66 16 13 C 0.58 10.02 7.85 -12.47 -0.10 9.92 16 14 O -0.56 -10.57 16.54 5.28 0.09 -10.49 16 15 C -0.09 -1.34 5.84 -104.93 -0.61 -1.95 16 16 C -0.06 -0.81 8.82 -39.06 -0.34 -1.16 16 17 C 0.08 0.96 7.26 -39.58 -0.29 0.67 16 18 F -0.13 -1.40 17.25 2.25 0.04 -1.36 16 19 C -0.05 -0.55 10.06 -39.04 -0.39 -0.94 16 20 C 0.00 -0.04 7.26 -84.77 -0.62 -0.66 16 21 N -0.21 -2.93 12.40 32.15 0.40 -2.53 16 22 N 0.01 0.09 13.83 60.35 0.83 0.93 16 23 N -0.47 -6.36 7.36 32.50 0.24 -6.12 16 24 H 0.46 5.67 8.08 -182.49 -1.48 4.20 16 25 C 0.13 1.80 6.92 -83.90 -0.58 1.22 16 26 C 0.05 0.86 4.97 -8.38 -0.04 0.81 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.35 7.47 3.16 45.56 0.14 7.61 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 31 H 0.16 1.91 5.63 -52.48 -0.30 1.61 16 32 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.10 1.61 7.88 -51.93 -0.41 1.20 16 34 H 0.07 1.20 6.75 -51.92 -0.35 0.84 16 LS Contribution 297.42 15.07 4.48 4.48 Total: -1.00 -27.83 297.42 -5.31 -33.13 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.30 Total: 11.84 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.56 Total: 2.99 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.57 Total: -41.66 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.38 Total: -23.04 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -4.15 Total: 13.62 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.83 -5.31 -33.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328655268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.821 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds