Wall clock time and date at job start Fri Apr 10 2020 17:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99498 * 2 1 4 4 C 1.50702 * 109.46908 * 274.99827 * 3 2 1 5 5 H 1.08000 * 120.00180 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99591 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00511 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99798 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46870 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47138 * 119.99820 * 8 6 4 11 11 H 1.48500 * 109.47010 * 240.00347 * 8 6 4 12 12 S 1.65594 * 120.00374 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40337 * 156.45859 * 12 2 1 14 14 O 1.42102 * 106.40277 * 23.54161 * 12 2 1 15 15 N 1.65598 * 107.21785 * 270.00238 * 12 2 1 16 16 C 1.46498 * 120.00284 * 65.00110 * 15 12 2 17 17 C 1.53004 * 109.47369 * 164.99849 * 16 15 12 18 18 N 1.46898 * 109.46850 * 180.02562 * 17 16 15 19 19 C 1.46845 * 111.00565 * 45.79157 * 18 17 16 20 20 C 1.53034 * 109.52676 * 185.84030 * 19 18 17 21 21 C 1.53126 * 109.27454 * 300.81918 * 20 19 18 22 22 C 1.53119 * 109.16048 * 57.65518 * 21 20 19 23 23 C 1.46850 * 110.99813 * 170.00223 * 18 17 16 24 24 H 1.09003 * 109.47315 * 269.99638 * 1 2 3 25 25 H 1.09000 * 109.47404 * 30.00534 * 1 2 3 26 26 H 1.09002 * 109.46692 * 150.00128 * 1 2 3 27 27 H 1.08995 * 109.46983 * 34.99961 * 3 2 1 28 28 H 1.08995 * 109.46864 * 155.00342 * 3 2 1 29 29 H 0.97005 * 120.00266 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00038 * 244.99562 * 15 12 2 31 31 H 1.09006 * 109.47054 * 44.99799 * 16 15 12 32 32 H 1.08999 * 109.46804 * 285.00207 * 16 15 12 33 33 H 1.08995 * 109.46637 * 59.99753 * 17 16 15 34 34 H 1.09001 * 109.46762 * 299.99710 * 17 16 15 35 35 H 1.08995 * 109.46315 * 65.81881 * 19 18 17 36 36 H 1.09005 * 109.45975 * 305.85394 * 19 18 17 37 37 H 1.08997 * 109.50792 * 180.88024 * 20 19 18 38 38 H 1.09006 * 109.50471 * 60.75677 * 20 19 18 39 39 H 1.08999 * 109.52028 * 177.55723 * 21 20 19 40 40 H 1.08993 * 109.52259 * 297.74866 * 21 20 19 41 41 H 1.09004 * 109.50440 * 62.28501 * 22 21 20 42 42 H 1.09003 * 109.50154 * 182.40625 * 22 21 20 43 43 H 1.09005 * 109.46186 * 54.13967 * 23 18 17 44 44 H 1.08998 * 109.46012 * 294.17361 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9282 1.1939 -2.2332 6 6 3.0004 2.9504 -1.6664 7 7 3.5040 3.6466 -0.6708 8 14 3.1795 3.5661 -3.4210 9 1 2.5309 2.6067 -4.3508 10 1 2.5286 4.8948 -3.5483 11 1 4.6205 3.6863 -3.7588 12 16 2.2931 -1.4340 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5434 15 7 2.5381 -1.8578 1.5826 16 6 1.3947 -2.1767 2.4411 17 6 1.8876 -2.8833 3.7056 18 7 0.7410 -3.2036 4.5660 19 6 -0.3545 -3.7929 3.7856 20 6 -1.5800 -3.9782 4.6832 21 6 -1.2142 -4.8928 5.8556 22 6 -0.0395 -4.2802 6.6233 23 6 1.1413 -4.0860 5.6694 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6500 2.0043 0.5894 28 1 3.1857 1.1178 0.4342 29 1 3.9674 4.4803 -0.8474 30 1 3.4388 -1.8950 1.9408 31 1 0.7081 -2.8309 1.9036 32 1 0.8794 -1.2566 2.7165 33 1 2.5743 -2.2292 4.2429 34 1 2.4029 -3.8035 3.4301 35 1 -0.0415 -4.7606 3.3938 36 1 -0.6076 -3.1306 2.9576 37 1 -2.3878 -4.4300 4.1075 38 1 -1.9018 -3.0090 5.0644 39 1 -2.0717 -4.9927 6.5209 40 1 -0.9295 -5.8743 5.4768 41 1 -0.3371 -3.3157 7.0350 42 1 0.2533 -4.9477 7.4337 43 1 1.9747 -3.6368 6.2097 44 1 1.4472 -5.0524 5.2688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330490415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:10 Heat of formation + Delta-G solvation = -78.888455 kcal Electronic energy + Delta-G solvation = -24032.312948 eV Core-core repulsion = 20532.102116 eV Total energy + Delta-G solvation = -3500.210832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.39028 -36.63986 -35.78027 -35.45218 -35.16042 -33.15342 -32.41980 -31.13899 -27.99629 -27.75597 -25.05690 -24.60096 -23.25526 -22.28412 -21.54298 -19.93086 -18.96868 -17.36540 -16.68221 -16.47281 -16.38927 -15.64065 -15.43555 -15.08939 -14.80146 -14.53305 -14.21519 -13.92566 -13.63123 -13.47457 -13.27750 -13.09586 -12.39458 -12.34063 -12.20238 -12.11005 -11.72776 -11.59737 -11.47145 -11.45507 -11.26936 -11.13911 -11.06966 -10.97085 -10.69080 -10.63341 -10.52238 -10.43785 -10.02144 -9.73773 -9.30684 -8.55020 -8.43877 -8.05400 -6.05368 -4.09255 1.23255 3.31919 3.38126 3.39501 3.45362 3.78065 4.15679 4.45842 4.50803 4.55143 4.65451 4.74602 4.95869 4.99329 5.07533 5.15867 5.23258 5.30033 5.33887 5.35238 5.44147 5.52078 5.62750 5.65164 5.67437 5.72302 5.82048 5.86398 5.90170 6.01137 6.07934 6.11526 6.31459 6.57499 6.81020 6.84992 7.10497 7.27754 7.43563 7.62807 7.92342 8.21713 8.93527 9.55982 11.03282 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.003146 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.234205 B = 8898.806511 C = 8962.206737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.784 3.216 13 O -0.964 6.964 14 O -0.999 6.999 15 N -1.135 6.135 16 C 0.117 3.883 17 C 0.050 3.950 18 N -0.535 5.535 19 C 0.042 3.958 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.117 4.117 23 C 0.056 3.944 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.263 0.737 30 H 0.412 0.588 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -15.035 14.565 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.791 3.209 13 O -0.947 6.947 14 O -0.983 6.983 15 N -0.894 5.894 16 C -0.010 4.010 17 C -0.079 4.079 18 N -0.260 5.260 19 C -0.086 4.086 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.072 4.072 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.013 -14.916 13.966 21.949 hybrid contribution 0.786 -0.045 -0.731 1.074 sum -7.226 -14.961 13.235 21.242 Atomic orbital electron populations 1.21377 0.80193 1.03499 1.00200 1.57574 1.14289 1.23285 1.88666 1.19057 0.91024 0.78741 0.97671 1.21540 1.35964 1.06295 0.92974 0.92115 1.24937 0.95127 0.96523 0.97495 1.69928 1.37387 1.15313 1.30873 0.86456 0.77987 0.78486 0.84594 1.19640 1.20969 1.20806 1.01868 0.73359 0.72938 0.72734 1.93645 1.40667 1.84856 1.75557 1.93516 1.67646 1.60231 1.76870 1.56234 1.14428 1.86383 1.32341 1.21332 0.88251 1.00257 0.91136 1.22280 0.92991 0.99525 0.93101 1.61960 1.08183 1.44816 1.11076 1.22308 0.91719 0.98199 0.96351 1.21598 0.96852 1.00511 0.96562 1.21592 0.98257 0.98668 0.97492 1.21582 0.95023 1.01475 0.97361 1.22092 0.97857 0.94604 0.92683 0.94281 0.90345 0.91625 0.94664 0.94438 0.92748 0.75561 0.90540 0.90873 0.89722 0.94085 0.94689 0.89669 0.91455 0.90890 0.91865 0.92403 0.90946 0.91668 0.90663 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.68 59.85 0.64 2.24 16 2 N -1.00 -20.62 3.23 -123.05 -0.40 -21.01 16 3 C 0.26 6.46 5.08 -5.19 -0.03 6.44 16 4 C -0.53 -14.94 9.38 -34.44 -0.32 -15.26 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 S 2.78 54.98 6.10 -107.50 -0.66 54.33 16 13 O -0.96 -23.05 17.11 -57.17 -0.98 -24.03 16 14 O -1.00 -20.67 16.21 -57.17 -0.93 -21.59 16 15 N -1.13 -16.66 6.05 -10.61 -0.06 -16.72 16 16 C 0.12 1.46 5.50 -4.04 -0.02 1.43 16 17 C 0.05 0.52 5.42 -3.82 -0.02 0.50 16 18 N -0.53 -5.30 4.81 -234.67 -1.13 -6.43 16 19 C 0.04 0.40 4.85 -3.84 -0.02 0.38 16 20 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 21 C -0.12 -0.87 6.00 -26.60 -0.16 -1.03 16 22 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 23 C 0.06 0.47 5.42 -3.83 -0.02 0.45 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 26 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 27 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 28 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.41 5.28 8.65 -34.47 -0.30 4.98 16 31 H 0.08 0.96 5.82 -51.93 -0.30 0.66 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.84 5.81 -51.93 -0.30 0.53 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -33.62 360.60 -10.91 -44.53 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.54 Total: -0.62 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.37 Total: -5.31 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.85 Total: -69.68 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.91 Total: -45.62 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.66 Total: 54.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.62 -10.91 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330490415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.360 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds