Wall clock time and date at job start Fri Apr 10 2020 17:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99498 * 2 1 4 4 C 1.50702 * 109.46908 * 274.99827 * 3 2 1 5 5 H 1.08000 * 120.00180 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99591 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00511 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99798 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46870 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47138 * 119.99820 * 8 6 4 11 11 H 1.48500 * 109.47010 * 240.00347 * 8 6 4 12 12 S 1.65594 * 120.00374 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40337 * 156.45859 * 12 2 1 14 14 O 1.42102 * 106.40277 * 23.54161 * 12 2 1 15 15 N 1.65598 * 107.21785 * 270.00238 * 12 2 1 16 16 C 1.46498 * 120.00284 * 65.00110 * 15 12 2 17 17 C 1.53004 * 109.47369 * 164.99849 * 16 15 12 18 18 N 1.46898 * 109.46850 * 180.02562 * 17 16 15 19 19 C 1.46845 * 111.00565 * 45.79157 * 18 17 16 20 20 C 1.53034 * 109.52676 * 185.84030 * 19 18 17 21 21 C 1.53126 * 109.27454 * 300.81918 * 20 19 18 22 22 C 1.53119 * 109.16048 * 57.65518 * 21 20 19 23 23 C 1.46850 * 110.99813 * 170.00223 * 18 17 16 24 24 H 1.09003 * 109.47315 * 269.99638 * 1 2 3 25 25 H 1.09000 * 109.47404 * 30.00534 * 1 2 3 26 26 H 1.09002 * 109.46692 * 150.00128 * 1 2 3 27 27 H 1.08995 * 109.46983 * 34.99961 * 3 2 1 28 28 H 1.08995 * 109.46864 * 155.00342 * 3 2 1 29 29 H 0.97005 * 120.00266 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00038 * 244.99562 * 15 12 2 31 31 H 1.09006 * 109.47054 * 44.99799 * 16 15 12 32 32 H 1.08999 * 109.46804 * 285.00207 * 16 15 12 33 33 H 1.08995 * 109.46637 * 59.99753 * 17 16 15 34 34 H 1.09001 * 109.46762 * 299.99710 * 17 16 15 35 35 H 1.08995 * 109.46315 * 65.81881 * 19 18 17 36 36 H 1.09005 * 109.45975 * 305.85394 * 19 18 17 37 37 H 1.08997 * 109.50792 * 180.88024 * 20 19 18 38 38 H 1.09006 * 109.50471 * 60.75677 * 20 19 18 39 39 H 1.08999 * 109.52028 * 177.55723 * 21 20 19 40 40 H 1.08993 * 109.52259 * 297.74866 * 21 20 19 41 41 H 1.09004 * 109.50440 * 62.28501 * 22 21 20 42 42 H 1.09003 * 109.50154 * 182.40625 * 22 21 20 43 43 H 1.09005 * 109.46186 * 54.13967 * 23 18 17 44 44 H 1.08998 * 109.46012 * 294.17361 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9282 1.1939 -2.2332 6 6 3.0004 2.9504 -1.6664 7 7 3.5040 3.6466 -0.6708 8 14 3.1795 3.5661 -3.4210 9 1 2.5309 2.6067 -4.3508 10 1 2.5286 4.8948 -3.5483 11 1 4.6205 3.6863 -3.7588 12 16 2.2931 -1.4340 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5434 15 7 2.5381 -1.8578 1.5826 16 6 1.3947 -2.1767 2.4411 17 6 1.8876 -2.8833 3.7056 18 7 0.7410 -3.2036 4.5660 19 6 -0.3545 -3.7929 3.7856 20 6 -1.5800 -3.9782 4.6832 21 6 -1.2142 -4.8928 5.8556 22 6 -0.0395 -4.2802 6.6233 23 6 1.1413 -4.0860 5.6694 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6500 2.0043 0.5894 28 1 3.1857 1.1178 0.4342 29 1 3.9674 4.4803 -0.8474 30 1 3.4388 -1.8950 1.9408 31 1 0.7081 -2.8309 1.9036 32 1 0.8794 -1.2566 2.7165 33 1 2.5743 -2.2292 4.2429 34 1 2.4029 -3.8035 3.4301 35 1 -0.0415 -4.7606 3.3938 36 1 -0.6076 -3.1306 2.9576 37 1 -2.3878 -4.4300 4.1075 38 1 -1.9018 -3.0090 5.0644 39 1 -2.0717 -4.9927 6.5209 40 1 -0.9295 -5.8743 5.4768 41 1 -0.3371 -3.3157 7.0350 42 1 0.2533 -4.9477 7.4337 43 1 1.9747 -3.6368 6.2097 44 1 1.4472 -5.0524 5.2688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330490415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:09 Heat of formation + Delta-G solvation = -104.779746 kcal Electronic energy + Delta-G solvation = -24033.435678 eV Core-core repulsion = 20532.102116 eV Total energy + Delta-G solvation = -3501.333562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.11165 -38.31011 -37.23120 -36.87348 -36.76438 -34.50513 -34.00186 -31.78885 -29.66819 -28.91257 -26.77883 -25.40676 -24.21698 -23.90777 -22.39222 -20.58767 -20.43482 -19.02187 -18.43304 -18.20581 -17.58693 -16.91483 -16.54997 -16.29022 -16.05710 -15.51530 -15.24214 -15.08090 -14.95081 -14.64645 -14.32673 -14.10754 -13.95637 -13.92964 -13.37222 -13.25044 -13.17710 -13.03772 -13.00233 -12.93637 -12.70487 -12.48586 -12.43815 -12.34913 -12.08542 -11.96805 -11.72660 -11.56302 -11.23887 -11.14199 -10.61285 -10.50738 -9.79224 -9.29847 -8.20563 -6.32396 -0.33853 1.38666 1.41081 1.52780 1.99837 2.40219 2.59430 2.97470 3.10485 3.44772 3.73678 3.91013 3.99240 4.05533 4.08947 4.16664 4.31036 4.40531 4.46309 4.55684 4.63885 4.69179 4.73272 4.81196 4.81944 4.95258 4.96772 4.99410 5.08053 5.09139 5.14046 5.20587 5.27647 5.33487 5.46538 5.51697 5.69618 5.85006 6.03358 6.09762 6.13796 6.15999 6.76225 7.36563 8.87223 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.003146 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.234205 B = 8898.806511 C = 8962.206737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.002 6.002 3 C 0.272 3.728 4 C -0.549 4.549 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.269 1.269 11 H -0.279 1.279 12 S 2.801 3.199 13 O -1.010 7.010 14 O -1.009 7.009 15 N -1.120 6.120 16 C 0.113 3.887 17 C 0.055 3.945 18 N -0.542 5.542 19 C 0.037 3.963 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.114 4.114 23 C 0.053 3.947 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.017 0.983 29 H 0.268 0.732 30 H 0.422 0.578 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -15.703 15.310 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.844 5.844 3 C 0.148 3.852 4 C -0.589 4.589 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.205 1.205 12 S 2.808 3.192 13 O -0.994 6.994 14 O -0.992 6.992 15 N -0.883 5.883 16 C -0.013 4.013 17 C -0.074 4.074 18 N -0.268 5.268 19 C -0.090 4.090 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.075 4.075 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.257 0.743 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.883 -15.596 14.717 23.210 hybrid contribution 1.006 0.090 -0.884 1.342 sum -7.876 -15.505 13.833 22.222 Atomic orbital electron populations 1.21608 0.78082 1.03641 1.02514 1.57463 1.15751 1.21930 1.89297 1.18615 0.90445 0.80246 0.95883 1.21875 1.36151 1.06644 0.94209 0.93015 1.25748 0.94803 0.96776 1.01472 1.70010 1.37876 1.15767 1.32723 0.85527 0.78029 0.78417 0.79849 1.19453 1.19438 1.20496 1.01117 0.72081 0.72494 0.73469 1.93578 1.42901 1.85436 1.77459 1.93498 1.67697 1.60173 1.77831 1.55753 1.15878 1.85665 1.31012 1.21532 0.87358 1.00793 0.91627 1.22210 0.93361 0.99580 0.92269 1.62004 1.07982 1.45537 1.11228 1.22362 0.92259 0.97813 0.96592 1.21595 0.96393 1.00610 0.96777 1.21596 0.98640 0.98380 0.97298 1.21579 0.94597 1.01564 0.97449 1.22178 0.98611 0.94327 0.92383 0.90883 0.91057 0.90630 0.95265 0.96488 0.92347 0.74265 0.90424 0.90480 0.89048 0.93723 0.95025 0.90249 0.90609 0.91358 0.90796 0.92322 0.91487 0.90215 0.90150 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.87 10.68 127.77 1.36 4.23 16 2 N -1.00 -41.34 3.23 -543.22 -1.75 -43.10 16 3 C 0.27 13.85 5.08 85.63 0.43 14.28 16 4 C -0.55 -31.40 9.38 25.60 0.24 -31.16 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.65 5.46 84.66 0.46 1.12 16 7 N -0.92 -54.41 13.29 21.45 0.28 -54.13 16 8 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 S 2.80 110.13 6.10 -56.49 -0.34 109.78 16 13 O -1.01 -49.10 17.11 -128.00 -2.19 -51.29 16 14 O -1.01 -40.98 16.21 -128.00 -2.08 -43.06 16 15 N -1.12 -31.88 6.05 -187.48 -1.14 -33.02 16 16 C 0.11 2.64 5.50 86.38 0.47 3.12 16 17 C 0.06 1.05 5.42 86.30 0.47 1.52 16 18 N -0.54 -9.85 4.81 -896.37 -4.31 -14.15 16 19 C 0.04 0.66 4.85 86.33 0.42 1.08 16 20 C -0.12 -1.66 6.09 30.65 0.19 -1.47 16 21 C -0.12 -1.49 6.00 30.68 0.18 -1.30 16 22 C -0.11 -1.42 6.09 30.65 0.19 -1.24 16 23 C 0.05 0.79 5.42 86.32 0.47 1.25 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 26 H 0.08 2.33 7.02 -2.39 -0.02 2.32 16 27 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 28 H 0.02 0.93 7.61 -2.39 -0.02 0.92 16 29 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 30 H 0.42 10.47 8.65 -96.74 -0.84 9.63 16 31 H 0.08 1.83 5.82 -2.38 -0.01 1.82 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 1.45 5.81 -2.38 -0.01 1.44 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 1.11 8.12 -2.38 -0.02 1.09 16 44 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -71.16 360.60 -4.47 -75.62 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.14 Total: 14.94 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.89 Total: -8.57 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -6.91 Total: -144.40 kcal Atomic # 8 Polarization: -90.08 SS G_CDS: -4.26 Total: -94.34 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 110.13 SS G_CDS: -0.34 Total: 109.78 kcal Total: -71.16 -4.47 -75.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330490415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.156 kcal (2) G-P(sol) polarization free energy of solvation -71.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds