Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99744 * 2 1 4 4 O 1.20825 * 119.99767 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00059 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46912 * 180.02562 * 5 3 2 7 7 C 1.36896 * 119.99628 * 263.08318 * 6 5 3 8 8 H 1.08002 * 119.99688 * 206.63430 * 7 6 5 9 9 C 1.39028 * 120.00334 * 26.63576 * 7 6 5 10 10 N 1.31371 * 120.00043 * 8.00128 * 9 7 6 11 11 Si 1.86800 * 120.00082 * 187.99960 * 9 7 6 12 12 H 1.48503 * 109.47076 * 60.00207 * 11 9 7 13 13 H 1.48500 * 109.47257 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47411 * 300.00122 * 11 9 7 15 15 C 1.34773 * 120.00134 * 83.08940 * 6 5 3 16 16 O 1.21602 * 119.99666 * 4.99730 * 15 6 5 17 17 C 1.47640 * 119.99907 * 185.00270 * 15 6 5 18 18 C 1.39872 * 120.04254 * 209.41040 * 17 15 6 19 19 C 1.37854 * 120.19222 * 180.02562 * 18 17 15 20 20 C 1.38479 * 120.28820 * 359.97419 * 19 18 17 21 21 F 1.35092 * 119.95759 * 180.02562 * 20 19 18 22 22 C 1.40037 * 120.08243 * 0.02562 * 20 19 18 23 23 C 1.43199 * 120.09590 * 179.70290 * 22 20 19 24 24 N 8.90715 * 104.20602 * 346.83977 * 2 1 3 25 25 C 1.39336 * 119.80446 * 359.97438 * 22 20 19 26 26 H 1.08999 * 109.47415 * 60.00450 * 1 2 3 27 27 H 1.09004 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47246 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.46972 * 60.00343 * 5 3 2 30 30 H 1.08992 * 109.47155 * 300.00470 * 5 3 2 31 31 H 0.96998 * 120.00107 * 179.97438 * 10 9 7 32 32 H 1.08001 * 119.90468 * 359.97438 * 18 17 15 33 33 H 1.08002 * 119.85375 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.14191 * 179.97438 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.3129 3.2961 -1.1756 8 1 4.9996 4.1297 -1.1739 9 6 3.7655 2.8488 -2.3728 10 7 2.8144 1.9427 -2.3621 11 14 4.3824 3.5364 -3.9964 12 1 5.8328 3.2500 -4.1361 13 1 3.6428 2.9005 -5.1162 14 1 4.1624 5.0046 -4.0278 15 6 4.0375 3.3657 1.1599 16 8 3.8318 2.7957 2.2142 17 6 4.3483 4.8090 1.1494 18 6 4.9977 5.3935 2.2417 19 6 5.2890 6.7409 2.2353 20 6 4.9418 7.5253 1.1482 21 9 5.2309 8.8449 1.1488 22 6 4.2913 6.9524 0.0483 23 6 3.9265 7.7645 -1.0732 24 7 3.6379 8.4080 -1.9659 25 6 3.9952 5.5909 0.0509 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9564 0.7808 -0.8892 30 1 3.9557 0.7811 0.8907 31 1 2.4322 1.6309 -3.1974 32 1 5.2709 4.7876 3.0929 33 1 5.7901 7.1866 3.0818 34 1 3.4933 5.1434 -0.7943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341042557.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = -101.975062 kcal Electronic energy + Delta-G solvation = -24994.992852 eV Core-core repulsion = 21001.324896 eV Total energy + Delta-G solvation = -3993.667955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.12458 -41.54935 -40.67891 -39.26901 -37.58034 -37.22760 -36.57550 -33.58720 -32.59337 -32.23953 -29.94499 -27.85868 -26.90078 -25.10295 -24.33045 -22.45675 -21.41101 -20.43968 -18.73052 -18.64887 -18.39602 -17.91886 -17.42399 -17.20883 -16.92484 -16.83831 -16.27464 -16.13042 -15.34819 -15.10783 -14.97608 -14.85338 -14.63180 -14.34357 -14.22911 -14.13215 -13.85347 -13.63469 -13.25974 -13.05175 -13.01980 -12.85869 -12.65244 -12.47695 -12.26344 -12.16562 -11.52704 -11.43085 -10.95928 -10.67040 -10.16155 -9.84814 -9.77878 -8.44999 -6.06755 -0.52145 -0.03990 1.35263 1.41636 1.44002 1.49721 1.55194 1.80064 1.94279 2.20113 2.30932 2.61840 2.68827 2.80973 2.94956 3.14302 3.71892 3.93438 4.15118 4.25565 4.30936 4.38846 4.44078 4.55934 4.59620 4.73384 4.78769 4.90889 4.93665 5.04498 5.34053 5.39037 5.61209 5.67189 5.74789 6.25129 6.26218 6.98219 7.25102 7.38423 7.77629 8.60700 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.005954 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.677491 B = 4701.686014 C = 5914.305225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.488 3.512 4 O -0.537 6.537 5 C 0.154 3.846 6 N -0.429 5.429 7 C -0.347 4.347 8 H 0.119 0.881 9 C 0.012 3.988 10 N -0.887 5.887 11 Si 0.973 3.027 12 H -0.254 1.254 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.502 3.498 16 O -0.617 6.617 17 C -0.127 4.127 18 C -0.006 4.006 19 C -0.139 4.139 20 C 0.162 3.838 21 F -0.128 7.128 22 C -0.088 4.088 23 C 0.275 3.725 24 N -0.449 5.449 25 C -0.002 4.002 26 H 0.044 0.956 27 H 0.132 0.868 28 H 0.051 0.949 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.274 0.726 32 H 0.163 0.837 33 H 0.193 0.807 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 1.187 5.985 7.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.331 3.669 4 O -0.425 6.425 5 C 0.029 3.971 6 N -0.145 5.145 7 C -0.474 4.474 8 H 0.136 0.864 9 C -0.192 4.192 10 N -0.525 5.525 11 Si 0.798 3.202 12 H -0.178 1.178 13 H -0.210 1.210 14 H -0.205 1.205 15 C 0.294 3.706 16 O -0.506 6.506 17 C -0.131 4.131 18 C -0.026 4.026 19 C -0.157 4.157 20 C 0.140 3.860 21 F -0.106 7.106 22 C -0.093 4.093 23 C -0.039 4.039 24 N -0.125 5.125 25 C -0.023 4.023 26 H 0.063 0.937 27 H 0.150 0.850 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.210 0.790 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.431 2.098 4.919 6.354 hybrid contribution -0.399 0.144 -1.104 1.182 sum 3.032 2.242 3.816 5.365 Atomic orbital electron populations 1.23267 0.76287 1.04744 1.01143 1.86419 1.23976 1.33866 1.85091 1.23970 0.92590 0.80768 0.69572 1.90486 1.67329 1.37623 1.47057 1.20510 0.87061 0.85368 1.04175 1.43324 1.56149 1.08473 1.06597 1.19988 1.26148 1.18176 0.83102 0.86405 1.25918 0.94443 0.96639 1.02186 1.69689 1.23801 1.29981 1.28987 0.85258 0.79335 0.78072 0.77574 1.17844 1.20986 1.20506 1.18403 0.81587 0.87061 0.83572 1.90624 1.57433 1.70803 1.31710 1.19808 1.03755 0.93318 0.96181 1.21527 0.90448 0.94350 0.96251 1.21251 1.03423 0.92608 0.98455 1.17855 0.96405 0.77873 0.93887 1.91535 1.90840 1.31671 1.96561 1.15899 1.09936 0.92151 0.91303 1.25633 0.92780 0.92672 0.92836 1.81241 1.10241 1.10167 1.10877 1.21944 0.92551 0.89686 0.98116 0.93748 0.84973 0.93065 0.85885 0.88643 0.91532 0.81913 0.79033 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.26 10.56 113.37 1.20 2.45 16 2 O -0.38 -15.22 10.57 -51.44 -0.54 -15.76 16 3 C 0.49 22.87 6.00 71.24 0.43 23.30 16 4 O -0.54 -28.55 15.50 21.97 0.34 -28.21 16 5 C 0.15 6.84 5.16 85.63 0.44 7.28 16 6 N -0.43 -19.61 2.17 -643.10 -1.40 -21.01 16 7 C -0.35 -15.58 6.63 84.09 0.56 -15.02 16 8 H 0.12 4.92 5.73 -2.91 -0.02 4.91 16 9 C 0.01 0.55 5.13 84.95 0.44 0.99 16 10 N -0.89 -43.03 8.80 21.68 0.19 -42.84 16 11 Si 0.97 37.92 29.56 68.60 2.03 39.95 16 12 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 13 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 14 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 15 C 0.50 22.14 7.14 86.73 0.62 22.76 16 16 O -0.62 -29.40 16.36 -4.04 -0.07 -29.47 16 17 C -0.13 -4.55 5.46 -20.12 -0.11 -4.66 16 18 C -0.01 -0.16 9.58 22.57 0.22 0.06 16 19 C -0.14 -2.81 9.99 22.24 0.22 -2.59 16 20 C 0.16 4.07 7.28 22.76 0.17 4.23 16 21 F -0.13 -3.16 16.80 44.97 0.76 -2.40 16 22 C -0.09 -2.75 5.73 -21.33 -0.12 -2.87 16 23 C 0.28 9.59 14.97 88.31 1.32 10.91 16 24 N -0.45 -17.16 18.55 19.02 0.35 -16.81 16 25 C 0.00 -0.06 7.33 22.81 0.17 0.10 16 26 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.12 5.42 6.64 -2.39 -0.02 5.40 16 30 H 0.10 3.92 7.57 -2.39 -0.02 3.90 16 31 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 32 H 0.16 3.75 7.90 -2.91 -0.02 3.73 16 33 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.15 6.32 5.55 -2.91 -0.02 6.30 16 Total: -1.00 -63.03 314.75 8.38 -54.65 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.18 Total: 14.96 kcal Atomic # 6 Polarization: 41.41 SS G_CDS: 5.54 Total: 46.95 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -0.85 Total: -80.66 kcal Atomic # 8 Polarization: -73.17 SS G_CDS: -0.27 Total: -73.44 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -63.03 8.38 -54.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341042557.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.328 kcal (2) G-P(sol) polarization free energy of solvation -63.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds