Wall clock time and date at job start Fri Apr 10 2020 17:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00214 * 2 1 4 4 C 1.50699 * 109.47368 * 84.99977 * 3 2 1 5 5 H 1.08000 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99904 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99480 * 179.97438 * 6 4 3 8 8 Si 1.86791 * 120.00282 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47314 * 90.00318 * 8 6 4 10 10 H 1.48499 * 109.47146 * 210.00368 * 8 6 4 11 11 H 1.48502 * 109.47353 * 330.00218 * 8 6 4 12 12 S 1.65598 * 119.99761 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40399 * 28.29779 * 12 2 1 14 14 O 1.42099 * 106.40088 * 161.21646 * 12 2 1 15 15 N 1.65600 * 107.22205 * 274.75446 * 12 2 1 16 16 C 1.46926 * 120.63034 * 271.92624 * 15 12 2 17 17 C 1.52757 * 109.00752 * 233.57698 * 16 15 12 18 18 C 1.53034 * 109.38813 * 305.59297 * 17 16 15 19 19 C 1.53041 * 109.53940 * 61.23409 * 18 17 16 20 20 C 1.46920 * 120.62962 * 92.19945 * 15 12 2 21 21 H 1.09000 * 109.58922 * 246.15688 * 20 15 12 22 22 C 1.53004 * 109.58587 * 6.44508 * 20 15 12 23 23 C 1.53004 * 109.47063 * 186.02314 * 22 20 15 24 24 N 1.46897 * 109.47088 * 184.69657 * 23 22 20 25 25 H 1.09002 * 109.47454 * 85.97078 * 1 2 3 26 26 H 1.09000 * 109.47005 * 205.97316 * 1 2 3 27 27 H 1.09001 * 109.47033 * 325.97095 * 1 2 3 28 28 H 1.09006 * 109.47377 * 205.00550 * 3 2 1 29 29 H 1.09005 * 109.46772 * 325.00063 * 3 2 1 30 30 H 0.97009 * 120.00003 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.58716 * 353.41774 * 16 15 12 32 32 H 1.09005 * 109.58855 * 113.84182 * 16 15 12 33 33 H 1.09004 * 109.56301 * 185.55027 * 17 16 15 34 34 H 1.09004 * 109.38424 * 65.52005 * 17 16 15 35 35 H 1.09001 * 109.45387 * 301.21641 * 18 17 16 36 36 H 1.08996 * 109.45103 * 181.25593 * 18 17 16 37 37 H 1.09005 * 109.49606 * 178.68896 * 19 18 17 38 38 H 1.09000 * 109.52094 * 58.61014 * 19 18 17 39 39 H 1.08993 * 109.46981 * 306.01905 * 22 20 15 40 40 H 1.08997 * 109.47227 * 66.02649 * 22 20 15 41 41 H 1.09002 * 109.47166 * 304.69637 * 23 22 20 42 42 H 1.08996 * 109.46968 * 64.69469 * 23 22 20 43 43 H 1.00902 * 110.99712 * 56.05306 * 24 23 22 44 44 H 1.00902 * 110.99766 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9282 1.1939 2.2331 6 6 2.9998 2.9509 1.6662 7 7 3.1250 3.3848 2.9014 8 14 3.7139 3.9401 0.2519 9 1 2.6952 4.8994 -0.2454 10 1 4.9082 4.6865 0.7231 11 1 4.1063 3.0211 -0.8467 12 16 2.2929 -1.4342 0.0006 13 8 1.4540 -2.3821 -0.6452 14 8 3.6112 -1.1366 -0.4384 15 7 2.4245 -1.9236 1.5772 16 6 3.5533 -1.4806 2.4068 17 6 4.2377 -2.7055 3.0107 18 6 3.2021 -3.5499 3.7568 19 6 2.1292 -4.0284 2.7759 20 6 1.4179 -2.8139 2.1711 21 1 0.8750 -2.2819 2.9523 22 6 0.4391 -3.2753 1.0893 23 6 -0.6923 -4.0784 1.7342 24 7 -1.5701 -4.6161 0.6863 25 1 -0.3634 0.0722 -1.0251 26 1 -0.3633 -0.9239 0.4501 27 1 -0.3633 0.8517 0.5751 28 1 3.1858 1.1177 -0.4344 29 1 1.6501 2.0042 -0.5895 30 1 3.5885 4.2184 3.0780 31 1 4.2660 -0.9318 1.7912 32 1 3.1880 -0.8377 3.2077 33 1 5.0141 -2.3845 3.7053 34 1 4.6854 -3.2994 2.2139 35 1 2.7376 -2.9480 4.5379 36 1 3.6933 -4.4125 4.2069 37 1 1.4047 -4.6489 3.3035 38 1 2.5959 -4.6100 1.9809 39 1 0.0232 -2.4055 0.5809 40 1 0.9638 -3.9016 0.3678 41 1 -0.2705 -4.9008 2.3121 42 1 -1.2687 -3.4293 2.3933 43 1 -1.0465 -5.1696 0.0248 44 1 -2.3257 -5.1514 1.0870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342908927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:30 Heat of formation + Delta-G solvation = -82.619549 kcal Electronic energy + Delta-G solvation = -25830.533082 eV Core-core repulsion = 22330.160458 eV Total energy + Delta-G solvation = -3500.372624 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.05160 -38.56267 -37.32516 -36.91537 -36.08807 -34.48936 -33.47498 -32.66923 -30.27718 -28.64040 -26.78671 -25.06035 -24.37419 -23.73536 -22.22076 -21.42567 -19.82731 -19.10807 -18.55652 -18.10404 -17.37189 -16.64172 -16.41665 -16.15753 -15.99336 -15.59948 -15.29032 -15.10966 -14.72679 -14.50886 -14.42520 -14.34472 -14.31076 -14.11277 -13.64016 -13.29986 -13.15319 -13.04360 -12.99508 -12.93860 -12.58559 -12.37289 -12.12690 -12.01353 -11.95473 -11.66602 -11.64121 -11.46146 -11.31908 -10.93991 -10.76321 -9.93491 -9.71049 -9.44874 -8.28462 -6.31955 -0.30016 1.34702 1.39008 1.48730 1.93307 2.34843 2.54547 3.05970 3.37845 3.39834 3.77540 3.90985 4.04902 4.05449 4.11871 4.23623 4.35176 4.41313 4.47851 4.57498 4.60316 4.71219 4.79921 4.80355 4.86115 4.91802 4.94601 4.99193 5.07037 5.14786 5.20255 5.27401 5.35681 5.38469 5.45775 5.49588 5.56299 5.66156 5.91459 6.31932 6.33650 6.71366 6.71869 7.32083 8.86480 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.006050 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.275592 B = 4626.616570 C = 5300.663519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.000 6.000 3 C 0.219 3.781 4 C -0.532 4.532 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.934 5.934 8 Si 0.921 3.079 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.256 1.256 12 S 2.785 3.215 13 O -0.982 6.982 14 O -1.020 7.020 15 N -0.994 5.994 16 C 0.127 3.873 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.121 4.121 20 C 0.149 3.851 21 H 0.076 0.924 22 C -0.143 4.143 23 C 0.067 3.933 24 N -0.860 5.860 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.344 0.656 44 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -16.312 0.528 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.840 5.840 3 C 0.094 3.906 4 C -0.572 4.572 5 H 0.072 0.928 6 C -0.174 4.174 7 N -0.574 5.574 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.206 1.206 11 H -0.180 1.180 12 S 2.797 3.203 13 O -0.966 6.966 14 O -1.004 7.004 15 N -0.834 5.834 16 C 0.001 3.999 17 C -0.168 4.168 18 C -0.151 4.151 19 C -0.160 4.160 20 C 0.043 3.957 21 H 0.094 0.906 22 C -0.182 4.182 23 C -0.064 4.064 24 N -0.392 5.392 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.157 0.843 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.922 -15.814 -0.347 16.566 hybrid contribution 0.702 0.489 0.305 0.908 sum -4.221 -15.325 -0.042 15.896 Atomic orbital electron populations 1.21624 0.78015 1.03231 1.02268 1.57480 1.15622 1.21711 1.89140 1.19346 0.92161 0.82542 0.96566 1.21582 1.35958 1.06951 0.92673 0.92768 1.25583 0.95875 0.98354 0.97638 1.70006 1.43908 1.22729 1.20787 0.86095 0.79023 0.79698 0.80643 1.18454 1.20609 1.18033 1.01781 0.72175 0.72470 0.73889 1.93735 1.67550 1.59423 1.75885 1.93477 1.40304 1.85544 1.81075 1.57926 1.33945 1.60845 1.30724 1.21216 0.86957 0.96981 0.94700 1.21817 0.98657 0.96027 1.00250 1.21481 0.96099 0.99906 0.97569 1.21976 0.98706 0.96172 0.99171 1.21235 0.87834 0.90658 0.95982 0.90614 1.22674 0.96428 1.02824 0.96304 1.21782 0.93394 0.98050 0.93217 1.58566 1.15422 1.45894 1.19279 0.91795 0.90211 0.91276 0.94929 0.93944 0.92406 0.91777 0.92387 0.89666 0.91921 0.91630 0.89579 0.88295 0.91856 0.90662 0.89766 0.93431 0.90976 0.84293 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.17 10.36 127.77 1.32 4.50 16 2 N -1.00 -41.17 3.23 -543.22 -1.75 -42.92 16 3 C 0.22 10.44 4.48 85.63 0.38 10.82 16 4 C -0.53 -28.83 9.94 25.60 0.25 -28.57 16 5 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 6 C 0.02 1.39 5.47 84.65 0.46 1.85 16 7 N -0.93 -55.34 13.96 21.45 0.30 -55.04 16 8 Si 0.92 42.90 27.47 68.60 1.88 44.79 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 12 S 2.79 110.84 5.82 -56.49 -0.33 110.51 16 13 O -0.98 -37.10 11.90 -128.00 -1.52 -38.62 16 14 O -1.02 -47.96 15.25 -128.00 -1.95 -49.91 16 15 N -0.99 -33.95 3.35 -491.54 -1.65 -35.60 16 16 C 0.13 4.46 6.44 86.22 0.56 5.02 16 17 C -0.13 -3.35 6.06 30.52 0.19 -3.17 16 18 C -0.11 -2.32 5.89 30.62 0.18 -2.14 16 19 C -0.12 -2.49 5.03 30.67 0.15 -2.34 16 20 C 0.15 3.97 2.96 44.98 0.13 4.11 16 21 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 22 C -0.14 -3.80 3.21 30.60 0.10 -3.70 16 23 C 0.07 1.32 6.67 86.30 0.58 1.89 16 24 N -0.86 -16.38 9.62 -186.72 -1.80 -18.18 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 26 H 0.08 2.43 4.97 -2.39 -0.01 2.42 16 27 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 28 H 0.03 1.66 5.94 -2.38 -0.01 1.64 16 29 H 0.04 1.92 7.54 -2.38 -0.02 1.90 16 30 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 31 H 0.06 2.62 6.96 -2.38 -0.02 2.60 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.49 6.81 -2.38 -0.02 1.47 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 2.30 3.17 -2.39 -0.01 2.30 16 40 H 0.08 2.46 6.54 -2.39 -0.02 2.44 16 41 H 0.05 0.74 6.56 -2.39 -0.02 0.72 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.34 6.27 8.99 -89.69 -0.81 5.46 16 44 H 0.35 4.89 9.08 -89.69 -0.81 4.08 16 Total: -1.00 -67.80 342.16 -3.17 -70.97 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.66 Total: 25.74 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.31 Total: -11.74 kcal Atomic # 7 Polarization: -146.84 SS G_CDS: -4.90 Total: -151.74 kcal Atomic # 8 Polarization: -85.06 SS G_CDS: -3.48 Total: -88.53 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 16 Polarization: 110.84 SS G_CDS: -0.33 Total: 110.51 kcal Total: -67.80 -3.17 -70.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342908927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.647 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds