Wall clock time and date at job start Fri Apr 10 2020 17:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.30171 * 120.00544 * 2 1 4 4 N 1.37908 * 119.99429 * 0.29866 * 3 2 1 5 5 H 0.96991 * 120.00137 * 359.97438 * 4 3 2 6 6 C 1.37896 * 119.99339 * 180.23117 * 4 3 2 7 7 N 1.30170 * 119.99214 * 179.77008 * 6 4 3 8 8 C 1.46497 * 120.00436 * 354.32247 * 7 6 4 9 9 C 1.52998 * 109.47148 * 116.27722 * 8 7 6 10 10 C 1.50700 * 109.46920 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00325 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99649 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00228 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99621 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47384 * 60.00271 * 14 12 10 16 16 H 1.48510 * 109.47071 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47418 * 299.99900 * 14 12 10 18 18 N 1.37894 * 120.00396 * 359.49456 * 6 4 3 19 19 H 0.96995 * 120.00090 * 180.24752 * 18 6 4 20 20 C 1.37891 * 119.99679 * 0.23317 * 18 6 4 21 21 N 1.30176 * 119.99823 * 180.02562 * 20 18 6 22 22 C 1.46500 * 119.99823 * 173.67913 * 21 20 18 23 23 C 1.53001 * 109.47002 * 115.73463 * 22 21 20 24 24 C 1.52995 * 109.47414 * 179.97438 * 23 22 21 25 25 C 1.47199 * 109.47179 * 179.97438 * 24 23 22 26 26 N 8.36309 * 156.61227 * 252.70324 * 2 1 3 27 27 N 1.37887 * 120.00290 * 180.02562 * 3 2 1 28 28 H 0.97002 * 120.00548 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47044 * 299.99746 * 1 2 3 31 31 H 1.09000 * 109.47615 * 59.99414 * 1 2 3 32 32 H 1.09002 * 109.46952 * 356.27075 * 8 7 6 33 33 H 1.09006 * 109.47068 * 236.27955 * 8 7 6 34 34 H 1.08999 * 109.47299 * 60.00111 * 9 8 7 35 35 H 1.08999 * 109.46978 * 299.99926 * 9 8 7 36 36 H 0.97001 * 119.99974 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.47147 * 235.72762 * 22 21 20 38 38 H 1.09000 * 109.47481 * 355.73569 * 22 21 20 39 39 H 1.09008 * 109.46863 * 300.00185 * 23 22 21 40 40 H 1.09000 * 109.47374 * 59.99486 * 23 22 21 41 41 H 1.08994 * 109.47579 * 300.00288 * 24 23 22 42 42 H 1.09007 * 109.46545 * 60.00186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1159 1.1273 0.0000 4 7 1.4264 2.3216 0.0062 5 1 0.4565 2.3216 0.0102 6 6 2.1159 3.5157 0.0014 7 7 1.4651 4.6430 0.0028 8 6 0.0049 4.6460 -0.1161 9 6 -0.6096 5.2227 1.1608 10 6 -2.1116 5.2263 1.0382 11 1 -2.5809 4.8541 0.1396 12 6 -2.8866 5.7039 2.0738 13 7 -2.3151 6.1568 3.1682 14 14 -4.7484 5.7078 1.9221 15 1 -5.2318 4.3178 1.7238 16 1 -5.3449 6.2677 3.1615 17 1 -5.1487 6.5416 0.7602 18 7 3.4949 3.5157 0.0009 19 1 3.9799 4.3557 0.0011 20 6 4.1843 2.3215 0.0003 21 7 5.4860 2.3214 0.0004 22 6 6.2184 1.0603 0.1395 23 6 7.0159 0.7900 -1.1380 24 6 7.7813 -0.5267 -0.9926 25 6 8.5480 -0.7869 -2.2219 26 7 9.1409 -0.9870 -3.1696 27 7 3.4948 1.1272 -0.0005 28 1 3.9798 0.2872 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3499 3.6256 -0.2615 33 1 -0.2889 5.2577 -0.9692 34 1 -0.2548 6.2431 1.3060 35 1 -0.3157 4.6110 2.0138 36 1 -2.8603 6.4924 3.8969 37 1 6.9012 1.1282 0.9864 38 1 5.5126 0.2466 0.3061 39 1 6.3330 0.7222 -1.9850 40 1 7.7217 1.6037 -1.3047 41 1 8.4640 -0.4585 -0.1458 42 1 7.0756 -1.3406 -0.8258 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343618744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:50 Heat of formation + Delta-G solvation = 123.094523 kcal Electronic energy + Delta-G solvation = -23795.747843 eV Core-core repulsion = 20233.437201 eV Total energy + Delta-G solvation = -3562.310642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34923 -38.12438 -37.21577 -36.95531 -35.22778 -33.93525 -32.96728 -32.43514 -31.85513 -29.51314 -27.69354 -26.68256 -25.06238 -23.00179 -21.81635 -21.51433 -20.91134 -20.29944 -19.10707 -18.00055 -17.13714 -16.69621 -16.39972 -16.09421 -15.97188 -15.71558 -14.75652 -14.62232 -14.52725 -14.19225 -13.95746 -13.93003 -13.56756 -13.23246 -13.06212 -12.95656 -12.50322 -12.31461 -12.24751 -12.00057 -11.93268 -11.52756 -11.29102 -11.08734 -10.78776 -10.46820 -9.93875 -9.86413 -9.82983 -9.38107 -9.03913 -8.92503 -8.73310 -8.45643 -7.87909 -6.10525 -4.15558 1.70519 1.86795 1.98381 2.36620 2.42447 2.57302 2.88303 3.24840 3.25919 3.31506 3.33061 3.56825 4.27831 4.35609 4.45318 4.62302 4.77411 4.84290 4.92160 5.02624 5.12266 5.22108 5.25093 5.26274 5.45037 5.57642 5.66346 5.73601 5.77913 5.85960 5.96633 6.31027 6.40422 6.58574 6.71472 6.85476 7.19259 7.24875 7.53459 7.60682 7.64913 7.85492 8.02015 8.23481 8.35353 8.91007 9.49292 11.00245 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.002442 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.566862 B =11464.134072 C =12050.762460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.620 5.620 3 C 0.595 3.405 4 N -0.702 5.702 5 H 0.439 0.561 6 C 0.567 3.433 7 N -0.574 5.574 8 C 0.074 3.926 9 C 0.031 3.969 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.617 5.617 19 H 0.449 0.551 20 C 0.622 3.378 21 N -0.616 5.616 22 C 0.073 3.927 23 C -0.115 4.115 24 C -0.027 4.027 25 C 0.207 3.793 26 N -0.440 5.440 27 N -0.664 5.664 28 H 0.439 0.561 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.174 -13.286 -4.882 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.356 5.356 3 C 0.228 3.772 4 N -0.357 5.357 5 H 0.287 0.713 6 C 0.200 3.800 7 N -0.304 5.304 8 C -0.055 4.055 9 C -0.007 4.007 10 C -0.568 4.568 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.261 5.261 19 H 0.293 0.707 20 C 0.257 3.743 21 N -0.353 5.353 22 C -0.058 4.058 23 C -0.155 4.155 24 C -0.068 4.068 25 C -0.111 4.111 26 N -0.117 5.117 27 N -0.314 5.314 28 H 0.284 0.716 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.840 -12.930 -6.131 22.099 hybrid contribution -2.636 -0.633 0.446 2.748 sum 14.204 -13.562 -5.684 20.445 Atomic orbital electron populations 1.22005 0.86132 1.03307 1.00407 1.72316 1.10228 1.19685 1.33331 1.19239 0.84295 0.83129 0.90572 1.44161 1.11464 1.03032 1.77078 0.71330 1.18857 0.83347 0.83063 0.94744 1.72332 1.12685 1.19474 1.25907 1.22198 0.82152 0.98313 1.02837 1.19105 0.94561 0.97181 0.89864 1.21092 0.91179 1.42606 1.01948 0.92599 1.25009 0.98836 0.95085 0.95270 1.69959 1.35632 1.41452 1.05743 0.86619 0.85267 0.78377 0.77499 1.20218 1.21201 1.20112 1.40775 1.01852 1.07050 1.76420 0.70668 1.18970 0.86939 0.79030 0.89385 1.72547 1.00100 1.27359 1.35302 1.21710 0.96600 0.89546 0.97928 1.21609 0.99600 0.95663 0.98597 1.19312 0.97997 1.00073 0.89369 1.29199 0.93740 0.93303 0.94828 1.81243 1.10085 1.08704 1.11663 1.42520 1.02559 1.09211 1.77098 0.71601 0.89593 0.92860 0.93363 0.96315 0.90181 0.95232 0.96813 0.92751 0.89173 0.94368 0.91155 0.89806 0.86961 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.94 59.84 0.60 0.96 16 2 N -0.62 -7.72 11.01 -68.39 -0.75 -8.47 16 3 C 0.60 7.29 8.52 -319.12 -2.72 4.57 16 4 N -0.70 -9.63 5.20 -13.71 -0.07 -9.70 16 5 H 0.44 6.25 4.36 -40.82 -0.18 6.07 16 6 C 0.57 8.37 8.51 -319.12 -2.72 5.65 16 7 N -0.57 -10.18 10.61 -61.59 -0.65 -10.84 16 8 C 0.07 1.46 6.22 -4.04 -0.03 1.43 16 9 C 0.03 0.76 5.30 -27.88 -0.15 0.62 16 10 C -0.53 -14.22 9.11 -34.44 -0.31 -14.54 16 11 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 14 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 N -0.62 -7.34 5.49 -13.71 -0.08 -7.42 16 19 H 0.45 4.87 8.93 -40.82 -0.36 4.50 16 20 C 0.62 6.46 8.51 -319.11 -2.72 3.75 16 21 N -0.62 -5.65 10.61 -61.58 -0.65 -6.31 16 22 C 0.07 0.40 6.27 -4.04 -0.03 0.38 16 23 C -0.12 -0.53 5.49 -26.73 -0.15 -0.68 16 24 C -0.03 -0.07 5.70 -29.52 -0.17 -0.24 16 25 C 0.21 1.47 15.43 -20.77 -0.32 1.15 16 26 N -0.44 -4.80 18.54 42.14 0.78 -4.01 16 27 N -0.66 -6.46 5.33 -13.71 -0.07 -6.53 16 28 H 0.44 3.21 6.22 -40.82 -0.25 2.96 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 31 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.02 0.34 5.43 -51.93 -0.28 0.05 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.16 5.46 -51.93 -0.28 -0.13 16 39 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.11 0.08 8.14 -51.93 -0.42 -0.35 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -33.06 360.97 -14.67 -47.73 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.53 Total: 4.95 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -8.80 Total: 4.62 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -0.76 Total: -78.54 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.06 -14.67 -47.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343618744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.828 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds