Wall clock time and date at job start Fri Apr 10 2020 17:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.30171 * 120.00544 * 2 1 4 4 N 1.37908 * 119.99429 * 0.29866 * 3 2 1 5 5 H 0.96991 * 120.00137 * 359.97438 * 4 3 2 6 6 C 1.37896 * 119.99339 * 180.23117 * 4 3 2 7 7 N 1.30170 * 119.99214 * 179.77008 * 6 4 3 8 8 C 1.46497 * 120.00436 * 354.32247 * 7 6 4 9 9 C 1.52998 * 109.47148 * 116.27722 * 8 7 6 10 10 C 1.50700 * 109.46920 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00325 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99649 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00228 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99621 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47384 * 60.00271 * 14 12 10 16 16 H 1.48510 * 109.47071 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47418 * 299.99900 * 14 12 10 18 18 N 1.37894 * 120.00396 * 359.49456 * 6 4 3 19 19 H 0.96995 * 120.00090 * 180.24752 * 18 6 4 20 20 C 1.37891 * 119.99679 * 0.23317 * 18 6 4 21 21 N 1.30176 * 119.99823 * 180.02562 * 20 18 6 22 22 C 1.46500 * 119.99823 * 173.67913 * 21 20 18 23 23 C 1.53001 * 109.47002 * 115.73463 * 22 21 20 24 24 C 1.52995 * 109.47414 * 179.97438 * 23 22 21 25 25 C 1.47199 * 109.47179 * 179.97438 * 24 23 22 26 26 N 8.36309 * 156.61227 * 252.70324 * 2 1 3 27 27 N 1.37887 * 120.00290 * 180.02562 * 3 2 1 28 28 H 0.97002 * 120.00548 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47044 * 299.99746 * 1 2 3 31 31 H 1.09000 * 109.47615 * 59.99414 * 1 2 3 32 32 H 1.09002 * 109.46952 * 356.27075 * 8 7 6 33 33 H 1.09006 * 109.47068 * 236.27955 * 8 7 6 34 34 H 1.08999 * 109.47299 * 60.00111 * 9 8 7 35 35 H 1.08999 * 109.46978 * 299.99926 * 9 8 7 36 36 H 0.97001 * 119.99974 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.47147 * 235.72762 * 22 21 20 38 38 H 1.09000 * 109.47481 * 355.73569 * 22 21 20 39 39 H 1.09008 * 109.46863 * 300.00185 * 23 22 21 40 40 H 1.09000 * 109.47374 * 59.99486 * 23 22 21 41 41 H 1.08994 * 109.47579 * 300.00288 * 24 23 22 42 42 H 1.09007 * 109.46545 * 60.00186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1159 1.1273 0.0000 4 7 1.4264 2.3216 0.0062 5 1 0.4565 2.3216 0.0102 6 6 2.1159 3.5157 0.0014 7 7 1.4651 4.6430 0.0028 8 6 0.0049 4.6460 -0.1161 9 6 -0.6096 5.2227 1.1608 10 6 -2.1116 5.2263 1.0382 11 1 -2.5809 4.8541 0.1396 12 6 -2.8866 5.7039 2.0738 13 7 -2.3151 6.1568 3.1682 14 14 -4.7484 5.7078 1.9221 15 1 -5.2318 4.3178 1.7238 16 1 -5.3449 6.2677 3.1615 17 1 -5.1487 6.5416 0.7602 18 7 3.4949 3.5157 0.0009 19 1 3.9799 4.3557 0.0011 20 6 4.1843 2.3215 0.0003 21 7 5.4860 2.3214 0.0004 22 6 6.2184 1.0603 0.1395 23 6 7.0159 0.7900 -1.1380 24 6 7.7813 -0.5267 -0.9926 25 6 8.5480 -0.7869 -2.2219 26 7 9.1409 -0.9870 -3.1696 27 7 3.4948 1.1272 -0.0005 28 1 3.9798 0.2872 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3499 3.6256 -0.2615 33 1 -0.2889 5.2577 -0.9692 34 1 -0.2548 6.2431 1.3060 35 1 -0.3157 4.6110 2.0138 36 1 -2.8603 6.4924 3.8969 37 1 6.9012 1.1282 0.9864 38 1 5.5126 0.2466 0.3061 39 1 6.3330 0.7222 -1.9850 40 1 7.7217 1.6037 -1.3047 41 1 8.4640 -0.4585 -0.1458 42 1 7.0756 -1.3406 -0.8258 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343618744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:49 Heat of formation + Delta-G solvation = 103.875530 kcal Electronic energy + Delta-G solvation = -23796.581241 eV Core-core repulsion = 20233.437201 eV Total energy + Delta-G solvation = -3563.144040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.32575 -38.98295 -38.01176 -37.87014 -36.20279 -35.30673 -34.20113 -33.58275 -32.76743 -31.16456 -28.40175 -27.61033 -26.68434 -24.04316 -22.96650 -22.50533 -21.82817 -21.50157 -20.09079 -18.69073 -18.53498 -17.88197 -17.44123 -17.04185 -16.87357 -16.51278 -16.32919 -15.75093 -15.39067 -15.20722 -15.03840 -14.81026 -14.48945 -14.33372 -14.07791 -13.96091 -13.70813 -13.44023 -13.22606 -12.89743 -12.84249 -12.66207 -12.55671 -12.35264 -12.24486 -11.76702 -11.63450 -11.41381 -10.97086 -10.57761 -10.52480 -10.30362 -9.83274 -9.77916 -8.97855 -8.20198 -6.33419 0.83314 0.88805 0.94342 1.42400 1.45300 1.53048 1.60904 1.81790 1.87697 1.90111 2.23687 2.41486 3.13118 3.14187 3.68293 3.71230 3.79398 4.11322 4.22852 4.34319 4.41169 4.44614 4.54282 4.57207 4.65076 4.72248 4.74778 4.90911 4.94907 4.97381 5.05298 5.28512 5.39513 5.44629 5.51586 5.55778 5.64799 5.76192 5.92618 6.18450 6.27072 6.68582 6.72433 6.82565 7.02505 7.25428 7.36944 8.91130 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.002442 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.566862 B =11464.134072 C =12050.762460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.622 5.622 3 C 0.590 3.410 4 N -0.706 5.706 5 H 0.436 0.564 6 C 0.589 3.411 7 N -0.614 5.614 8 C 0.091 3.909 9 C 0.040 3.960 10 C -0.544 4.544 11 H 0.069 0.931 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.287 1.287 17 H -0.267 1.267 18 N -0.615 5.615 19 H 0.453 0.547 20 C 0.609 3.391 21 N -0.613 5.613 22 C 0.065 3.935 23 C -0.108 4.108 24 C -0.019 4.019 25 C 0.236 3.764 26 N -0.516 5.516 27 N -0.651 5.651 28 H 0.450 0.550 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.077 0.923 34 H -0.008 1.008 35 H -0.016 1.016 36 H 0.264 0.736 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.144 0.856 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.327 -15.254 -4.956 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.358 5.358 3 C 0.223 3.777 4 N -0.359 5.359 5 H 0.282 0.718 6 C 0.221 3.779 7 N -0.348 5.348 8 C -0.039 4.039 9 C 0.002 3.998 10 C -0.582 4.582 11 H 0.087 0.913 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.192 1.192 18 N -0.259 5.259 19 H 0.298 0.702 20 C 0.244 3.756 21 N -0.349 5.349 22 C -0.065 4.065 23 C -0.147 4.147 24 C -0.060 4.060 25 C -0.081 4.081 26 N -0.194 5.194 27 N -0.302 5.302 28 H 0.298 0.702 29 H 0.119 0.881 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.011 0.989 35 H 0.003 0.997 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.162 0.838 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.078 -14.965 -6.220 23.543 hybrid contribution -2.496 -0.114 0.509 2.550 sum 14.582 -15.079 -5.711 21.740 Atomic orbital electron populations 1.22093 0.85742 1.04250 1.00199 1.72344 1.10763 1.19431 1.33233 1.19442 0.85194 0.82428 0.90642 1.44194 1.11440 1.03322 1.76993 0.71797 1.18980 0.84310 0.82767 0.91861 1.72280 1.11232 1.20930 1.30315 1.21744 0.83787 0.98737 0.99615 1.18900 0.94419 0.94784 0.91717 1.21564 0.92293 1.42056 1.02322 0.91303 1.26002 1.04271 0.94627 0.94859 1.70114 1.37610 1.42684 1.06705 0.85463 0.78760 0.79059 0.77528 1.18731 1.21230 1.19152 1.40780 1.00713 1.08153 1.76255 0.70244 1.18932 0.87225 0.78615 0.90870 1.72537 0.99532 1.30048 1.32782 1.21957 0.97012 0.88534 0.98952 1.21480 0.99138 0.96448 0.97664 1.19588 0.98522 0.99751 0.88093 1.30001 0.92278 0.91173 0.94621 1.81272 1.12779 1.11245 1.14109 1.42456 1.01473 1.09609 1.76705 0.70174 0.88125 0.93773 0.92875 0.94594 0.90452 0.98949 0.99727 0.92772 0.87192 0.92331 0.92356 0.90925 0.83805 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.94 127.77 1.27 1.86 16 2 N -0.62 -14.28 11.01 -370.28 -4.08 -18.36 16 3 C 0.59 13.46 8.52 260.20 2.22 15.67 16 4 N -0.71 -18.81 5.20 -197.28 -1.03 -19.84 16 5 H 0.44 12.20 4.36 -92.72 -0.40 11.79 16 6 C 0.59 17.18 8.51 260.20 2.21 19.39 16 7 N -0.61 -22.25 10.61 -348.76 -3.70 -25.95 16 8 C 0.09 3.66 6.22 86.38 0.54 4.20 16 9 C 0.04 2.06 5.30 29.85 0.16 2.22 16 10 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16 11 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 12 C 0.00 0.04 5.46 84.66 0.46 0.50 16 13 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 14 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 N -0.61 -14.07 5.49 -197.28 -1.08 -15.15 16 19 H 0.45 9.56 8.93 -92.71 -0.83 8.74 16 20 C 0.61 11.44 8.51 260.20 2.21 13.65 16 21 N -0.61 -9.69 10.61 -348.75 -3.70 -13.39 16 22 C 0.07 0.47 6.27 86.38 0.54 1.02 16 23 C -0.11 -0.67 5.49 30.59 0.17 -0.50 16 24 C -0.02 -0.03 5.70 28.79 0.16 0.14 16 25 C 0.24 2.91 15.43 89.45 1.38 4.29 16 26 N -0.52 -11.08 18.54 20.00 0.37 -10.71 16 27 N -0.65 -11.08 5.33 -197.28 -1.05 -12.13 16 28 H 0.45 5.11 6.22 -92.71 -0.58 4.54 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.03 7.91 -2.38 -0.02 1.01 16 31 H 0.05 1.08 7.93 -2.39 -0.02 1.06 16 32 H 0.04 1.29 5.43 -2.39 -0.01 1.28 16 33 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 35 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.22 5.46 -2.39 -0.01 0.21 16 39 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H 0.14 -0.51 8.14 -2.38 -0.02 -0.53 16 Total: -1.00 -74.81 360.97 -1.12 -75.93 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.72 Total: 17.53 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 11.56 Total: 33.01 kcal Atomic # 7 Polarization: -157.22 SS G_CDS: -13.98 Total: -171.20 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.81 -1.12 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343618744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.802 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds