Wall clock time and date at job start Fri Apr 10 2020 17:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47162 * 239.99906 * 3 2 1 5 5 H 1.48500 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46825 * 119.99964 * 3 2 1 7 7 C 1.38952 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00033 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00047 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99995 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.46986 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99546 * 179.97438 * 13 12 10 15 15 O 1.21579 * 120.00617 * 0.02562 * 14 13 12 16 16 C 1.47611 * 119.99275 * 180.02562 * 14 13 12 17 17 C 1.39699 * 120.10377 * 359.97438 * 16 14 13 18 18 C 1.37723 * 119.97014 * 180.09641 * 17 16 14 19 19 C 1.39004 * 120.26836 * 359.94690 * 18 17 16 20 20 C 1.39258 * 120.04542 * 359.95055 * 19 18 17 21 21 C 1.38293 * 119.96336 * 0.13143 * 20 19 18 22 22 O 1.36154 * 120.76488 * 180.39475 * 20 19 18 23 23 C 1.43173 * 116.67703 * 342.61796 * 22 20 19 24 24 C 1.53462 * 108.23025 * 46.27077 * 23 22 20 25 25 O 1.35967 * 119.24478 * 179.80446 * 19 18 17 26 26 H 0.97009 * 119.99968 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99740 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.47650 * 59.99848 * 12 10 9 29 29 H 1.08997 * 109.47039 * 299.99381 * 12 10 9 30 30 H 0.97001 * 119.99727 * 0.02562 * 13 12 10 31 31 H 1.07999 * 120.01633 * 0.11481 * 17 16 14 32 32 H 1.08004 * 119.86383 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.02433 * 180.17053 * 21 20 19 34 34 H 1.08998 * 109.71539 * 286.57899 * 23 22 20 35 35 H 1.09009 * 109.70698 * 165.95161 * 23 22 20 36 36 H 1.08997 * 109.70847 * 180.51810 * 24 23 22 37 37 H 1.09000 * 109.74134 * 59.91983 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2435 -4.8629 -0.0034 13 7 2.1956 -5.9765 -0.0036 14 6 1.7462 -7.2472 -0.0046 15 8 0.5509 -7.4693 -0.0057 16 6 2.7054 -8.3691 -0.0043 17 6 4.0793 -8.1163 -0.0035 18 6 4.9719 -9.1652 -0.0052 19 6 4.5117 -10.4768 -0.0066 20 6 3.1433 -10.7356 -0.0052 21 6 2.2420 -9.6867 -0.0052 22 8 2.6765 -12.0146 0.0015 23 6 3.6029 -13.0390 -0.3753 24 6 4.9234 -12.7882 0.3653 25 8 5.4112 -11.4964 -0.0123 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3906 -0.0016 28 1 0.6179 -4.9201 -0.8940 29 1 0.6159 -4.9212 0.8859 30 1 3.1492 -5.7992 -0.0023 31 1 4.4414 -7.0988 -0.0013 32 1 6.0337 -8.9677 -0.0051 33 1 1.1807 -9.8863 -0.0013 34 1 3.7724 -13.0038 -1.4514 35 1 3.2050 -14.0150 -0.0970 36 1 5.6509 -13.5511 0.0882 37 1 4.7531 -12.8165 1.4415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344179780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:18 Heat of formation + Delta-G solvation = -116.514601 kcal Electronic energy + Delta-G solvation = -23683.839248 eV Core-core repulsion = 19813.001116 eV Total energy + Delta-G solvation = -3870.838132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57706 -39.80541 -38.27062 -37.60036 -37.28118 -34.51897 -33.73578 -31.69829 -31.36033 -30.95352 -29.23629 -27.44114 -25.37082 -24.56783 -23.06684 -22.08258 -20.18070 -19.70118 -19.03903 -18.20226 -17.91676 -17.54114 -16.65548 -15.86674 -15.75580 -15.33954 -15.27991 -15.25488 -14.74387 -14.56791 -14.17334 -14.11004 -14.02696 -13.89554 -13.54746 -13.38688 -12.74515 -12.29688 -12.04292 -11.98478 -11.63577 -11.46189 -11.37539 -11.10510 -10.82162 -10.51035 -10.32078 -9.88093 -9.63336 -8.96688 -8.82955 -8.64864 -8.36266 -8.10974 -6.51894 -3.94051 0.63840 1.06693 2.55997 2.80450 2.88011 3.13649 3.21490 3.24319 3.39067 3.69120 3.75770 3.80762 4.10881 4.27365 4.38867 4.48025 4.73918 4.78729 4.85523 4.94768 5.02433 5.09173 5.13598 5.16565 5.54904 5.81192 5.86076 5.93290 5.95144 6.05389 6.11054 6.23884 6.53635 6.62865 7.06290 7.45407 7.76035 7.90969 8.37505 8.44828 9.03735 9.38328 9.86015 10.64824 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.041094 B = 0.002354 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.200856 B =11890.793738 C =12532.333600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.701 5.701 14 C 0.559 3.441 15 O -0.544 6.544 16 C -0.125 4.125 17 C -0.076 4.076 18 C -0.120 4.120 19 C 0.072 3.928 20 C 0.038 3.962 21 C -0.052 4.052 22 O -0.305 6.305 23 C 0.020 3.980 24 C 0.019 3.981 25 O -0.305 6.305 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.411 0.589 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -23.803 0.003 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.355 5.355 14 C 0.346 3.654 15 O -0.423 6.423 16 C -0.129 4.129 17 C -0.095 4.095 18 C -0.139 4.139 19 C 0.027 3.973 20 C -0.007 4.007 21 C -0.072 4.072 22 O -0.219 6.219 23 C -0.056 4.056 24 C -0.056 4.056 25 O -0.219 6.219 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.250 0.750 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.176 -23.793 0.002 24.851 hybrid contribution 0.285 0.693 -0.002 0.749 sum 7.462 -23.100 0.000 24.275 Atomic orbital electron populations 1.69607 1.06015 1.28661 1.49140 1.25334 0.95674 0.99958 0.96745 0.85864 0.78774 0.80120 0.79162 1.19761 1.20861 1.19767 1.19682 0.93445 0.81986 1.48408 0.87692 1.41786 1.09510 1.04459 1.62489 1.19718 0.88288 0.84972 0.85704 1.90491 1.13692 1.86822 1.57491 1.20992 0.91815 0.85578 1.03507 1.45605 1.11751 1.04453 1.73664 1.17966 0.87929 0.82571 0.76955 1.90771 1.16043 1.84882 1.50633 1.19647 0.93454 0.93006 1.06745 1.21223 0.91552 0.99625 0.97106 1.20366 1.01082 0.88435 1.03978 1.19153 0.87215 0.89109 1.01871 1.18686 0.90959 0.85155 1.05902 1.20451 1.00323 0.88754 0.97641 1.86358 1.38361 1.12591 1.84633 1.23641 0.89993 0.91758 1.00180 1.23670 0.97458 0.84193 1.00300 1.86283 1.35249 1.16362 1.84013 0.91512 0.76990 0.89577 0.89576 0.74993 0.83921 0.83978 0.83313 0.90362 0.85930 0.85932 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.43 9.71 7.85 -10.99 -0.09 9.62 16 11 O -0.60 -15.06 15.24 5.54 0.08 -14.98 16 12 C 0.11 2.00 6.15 -5.19 -0.03 1.96 16 13 N -0.70 -11.79 5.48 -62.50 -0.34 -12.13 16 14 C 0.56 9.24 7.76 -12.43 -0.10 9.15 16 15 O -0.54 -10.45 16.34 5.30 0.09 -10.37 16 16 C -0.13 -1.73 5.87 -104.99 -0.62 -2.35 16 17 C -0.08 -0.90 9.53 -39.22 -0.37 -1.27 16 18 C -0.12 -1.30 9.94 -39.49 -0.39 -1.69 16 19 C 0.07 0.82 6.51 -38.92 -0.25 0.57 16 20 C 0.04 0.45 6.48 -39.18 -0.25 0.20 16 21 C -0.05 -0.69 9.50 -39.02 -0.37 -1.07 16 22 O -0.30 -3.27 10.42 -32.98 -0.34 -3.61 16 23 C 0.02 0.13 7.26 37.40 0.27 0.40 16 24 C 0.02 0.12 7.26 37.40 0.27 0.39 16 25 O -0.30 -3.00 10.41 -32.39 -0.34 -3.34 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.41 6.64 5.46 -40.82 -0.22 6.41 16 31 H 0.14 1.52 6.39 -52.49 -0.34 1.19 16 32 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.15 2.01 7.64 -52.49 -0.40 1.61 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.12 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -32.69 326.16 -6.22 -38.91 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -3.75 Total: 13.69 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -2.17 Total: 8.09 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.32 Total: -48.73 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.51 Total: -32.30 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.69 -6.22 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344179780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.605 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds