Wall clock time and date at job start Fri Apr 10 2020 17:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00159 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00281 * 3 2 1 6 6 H 1.48509 * 109.47046 * 149.99910 * 3 2 1 7 7 C 1.38956 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.47526 * 119.99808 * 180.02562 * 14 13 12 17 17 C 1.39442 * 120.23633 * 0.02562 * 16 14 13 18 18 C 1.38485 * 120.25708 * 180.02562 * 17 16 14 19 19 F 1.35098 * 119.66086 * 180.02562 * 18 17 16 20 20 C 1.38067 * 120.67332 * 359.97438 * 18 17 16 21 21 C 1.39676 * 120.08740 * 0.02562 * 20 18 17 22 22 N 1.35861 * 133.48685 * 179.97438 * 21 20 18 23 23 C 1.30090 * 109.55587 * 180.02562 * 22 21 20 24 24 N 1.36108 * 110.05242 * 359.97438 * 23 22 21 25 25 H 0.97004 * 126.31679 * 179.97438 * 24 23 22 26 26 C 1.37601 * 107.37201 * 359.74973 * 24 23 22 27 27 H 0.96996 * 119.99927 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 30 30 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 32 32 H 1.08002 * 119.86991 * 0.02562 * 17 16 14 33 33 H 1.07995 * 119.95384 * 180.02562 * 20 18 17 34 34 H 1.07999 * 124.97959 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0491 -3.7518 0.0017 14 6 7.3742 -3.9981 0.0013 15 8 8.1643 -3.0738 0.0009 16 6 7.8659 -5.3890 0.0013 17 6 6.9641 -6.4525 0.0013 18 6 7.4253 -7.7584 0.0018 19 9 6.5409 -8.7797 0.0012 20 6 8.7795 -8.0271 0.0020 21 6 9.7016 -6.9779 0.0020 22 7 11.0592 -6.9263 0.0026 23 6 11.4478 -5.6848 0.0029 24 7 10.3670 -4.8575 0.0020 25 1 10.3859 -3.8877 0.0024 26 6 9.2426 -5.6506 -0.0046 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9241 -1.8567 0.8910 30 1 5.9240 -1.8567 -0.8890 31 1 5.4187 -4.4890 0.0016 32 1 5.9019 -6.2571 0.0008 33 1 9.1263 -9.0498 0.0020 34 1 12.4772 -5.3583 0.0030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344189128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:21 Heat of formation + Delta-G solvation = -38.806938 kcal Electronic energy + Delta-G solvation = -23549.946805 eV Core-core repulsion = 19591.310777 eV Total energy + Delta-G solvation = -3958.636029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.06595 -42.54024 -39.92142 -38.44358 -37.08536 -34.74530 -33.92986 -33.47064 -31.89124 -30.70974 -29.53793 -27.97561 -24.98626 -24.02732 -22.71282 -22.23168 -20.62951 -19.80154 -19.02019 -18.44904 -18.11249 -17.39452 -16.53776 -16.12063 -15.96988 -15.61631 -15.51912 -15.20916 -15.20166 -14.90811 -14.47547 -14.16710 -14.09260 -13.51008 -13.29778 -13.15424 -12.59700 -12.31307 -12.26145 -12.19810 -11.67575 -11.30563 -11.10202 -10.71072 -10.66888 -10.17278 -10.11321 -9.77756 -9.19749 -8.88121 -8.75962 -8.55083 -8.38270 -6.47436 -4.00483 0.09296 0.94931 2.10370 2.61437 2.81804 2.92907 2.95743 2.98429 3.07482 3.41777 3.47855 3.59276 3.96908 4.05037 4.29666 4.40069 4.51369 4.72747 4.86574 4.91714 5.06692 5.15522 5.38622 5.52095 5.63355 5.65693 5.66418 5.76216 5.96650 6.26369 6.37356 6.98363 7.34715 7.40097 7.45012 7.90747 8.03713 8.36743 8.74309 9.21847 9.53926 10.64541 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.003013 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.653848 B = 9290.002410 C =10439.510367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.123 0.877 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.578 6.578 12 C 0.106 3.894 13 N -0.695 5.695 14 C 0.562 3.438 15 O -0.555 6.555 16 C -0.094 4.094 17 C -0.094 4.094 18 C 0.088 3.912 19 F -0.130 7.130 20 C -0.074 4.074 21 C 0.060 3.940 22 N -0.495 5.495 23 C 0.270 3.730 24 N -0.582 5.582 25 H 0.437 0.563 26 C 0.091 3.909 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.414 0.586 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.191 -8.594 -0.015 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.221 3.779 11 O -0.463 6.463 12 C -0.022 4.022 13 N -0.349 5.349 14 C 0.349 3.651 15 O -0.435 6.435 16 C -0.100 4.100 17 C -0.114 4.114 18 C 0.066 3.934 19 F -0.109 7.109 20 C -0.095 4.095 21 C -0.058 4.058 22 N -0.214 5.214 23 C -0.017 4.017 24 N -0.193 5.193 25 H 0.279 0.721 26 C -0.024 4.024 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.254 0.746 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 21.540 -9.275 -0.012 23.452 hybrid contribution -0.402 2.125 0.010 2.163 sum 21.139 -7.150 -0.001 22.315 Atomic orbital electron populations 1.69615 1.05729 1.27918 1.47759 1.25077 0.95537 0.98196 0.97033 0.86670 0.79883 0.83763 0.79150 1.19356 1.19910 1.19266 1.19450 0.78873 0.96866 1.48831 0.85987 1.42108 1.07751 1.06079 1.65110 1.19559 0.87881 0.84997 0.85486 1.90548 1.69076 1.30840 1.55798 1.21051 0.94177 0.83323 1.03646 1.45594 1.06606 1.09788 1.72866 1.17909 0.82503 0.87850 0.76795 1.90688 1.55558 1.45429 1.51865 1.18599 0.89612 0.93303 1.08516 1.21246 1.00819 0.90212 0.99168 1.16924 0.86402 0.84216 1.05842 1.91551 1.67485 1.57684 1.94163 1.20229 0.89571 0.99548 1.00152 1.18591 0.90691 0.90788 1.05762 1.70540 1.09189 1.19399 1.22318 1.25552 0.94153 0.84836 0.97179 1.43321 1.04676 1.11247 1.60079 0.72070 1.18567 0.87993 0.91700 1.04097 0.91288 0.79228 0.89350 0.89336 0.74617 0.82870 0.83416 0.76155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.43 13.96 55.50 0.77 -23.65 16 2 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 3 Si 0.88 18.44 27.74 -169.99 -4.71 13.72 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.09 6.52 56.52 0.37 -4.72 16 7 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 8 H 0.12 3.74 7.39 -52.49 -0.39 3.36 16 9 N -0.57 -12.81 5.09 -10.96 -0.06 -12.86 16 10 C 0.43 9.11 7.85 -10.98 -0.09 9.02 16 11 O -0.58 -14.02 15.24 5.55 0.08 -13.93 16 12 C 0.11 1.69 6.15 -5.19 -0.03 1.66 16 13 N -0.70 -10.32 5.48 -62.52 -0.34 -10.66 16 14 C 0.56 7.96 7.76 -12.48 -0.10 7.86 16 15 O -0.55 -8.54 15.28 5.28 0.08 -8.46 16 16 C -0.09 -1.17 5.88 -104.95 -0.62 -1.78 16 17 C -0.09 -1.06 9.51 -39.04 -0.37 -1.43 16 18 C 0.09 0.96 7.27 -39.55 -0.29 0.68 16 19 F -0.13 -1.48 17.25 2.25 0.04 -1.44 16 20 C -0.07 -0.79 10.06 -39.11 -0.39 -1.18 16 21 C 0.06 0.71 7.22 -84.71 -0.61 0.10 16 22 N -0.49 -5.41 11.28 -12.05 -0.14 -5.54 16 23 C 0.27 2.08 12.97 -89.73 -1.16 0.91 16 24 N -0.58 -5.42 6.00 -11.55 -0.07 -5.49 16 25 H 0.44 3.65 7.71 -40.82 -0.31 3.34 16 26 C 0.09 1.07 6.88 -83.73 -0.58 0.50 16 27 H 0.28 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.37 7.32 5.76 -40.82 -0.24 7.08 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.41 6.09 5.46 -40.82 -0.22 5.87 16 32 H 0.15 1.60 6.39 -52.49 -0.34 1.26 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.22 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -33.01 308.69 -6.53 -39.54 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -2.36 Total: 15.21 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -4.48 Total: 8.92 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.17 Total: -58.21 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.17 Total: -22.39 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.71 Total: 13.72 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.01 -6.53 -39.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.732 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds