Wall clock time and date at job start Fri Apr 10 2020 17:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00159 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00281 * 3 2 1 6 6 H 1.48509 * 109.47046 * 149.99910 * 3 2 1 7 7 C 1.38956 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.47526 * 119.99808 * 180.02562 * 14 13 12 17 17 C 1.39442 * 120.23633 * 0.02562 * 16 14 13 18 18 C 1.38485 * 120.25708 * 180.02562 * 17 16 14 19 19 F 1.35098 * 119.66086 * 180.02562 * 18 17 16 20 20 C 1.38067 * 120.67332 * 359.97438 * 18 17 16 21 21 C 1.39676 * 120.08740 * 0.02562 * 20 18 17 22 22 N 1.35861 * 133.48685 * 179.97438 * 21 20 18 23 23 C 1.30090 * 109.55587 * 180.02562 * 22 21 20 24 24 N 1.36108 * 110.05242 * 359.97438 * 23 22 21 25 25 H 0.97004 * 126.31679 * 179.97438 * 24 23 22 26 26 C 1.37601 * 107.37201 * 359.74973 * 24 23 22 27 27 H 0.96996 * 119.99927 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 30 30 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 32 32 H 1.08002 * 119.86991 * 0.02562 * 17 16 14 33 33 H 1.07995 * 119.95384 * 180.02562 * 20 18 17 34 34 H 1.07999 * 124.97959 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0491 -3.7518 0.0017 14 6 7.3742 -3.9981 0.0013 15 8 8.1643 -3.0738 0.0009 16 6 7.8659 -5.3890 0.0013 17 6 6.9641 -6.4525 0.0013 18 6 7.4253 -7.7584 0.0018 19 9 6.5409 -8.7797 0.0012 20 6 8.7795 -8.0271 0.0020 21 6 9.7016 -6.9779 0.0020 22 7 11.0592 -6.9263 0.0026 23 6 11.4478 -5.6848 0.0029 24 7 10.3670 -4.8575 0.0020 25 1 10.3859 -3.8877 0.0024 26 6 9.2426 -5.6506 -0.0046 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9241 -1.8567 0.8910 30 1 5.9240 -1.8567 -0.8890 31 1 5.4187 -4.4890 0.0016 32 1 5.9019 -6.2571 0.0008 33 1 9.1263 -9.0498 0.0020 34 1 12.4772 -5.3583 0.0030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344189128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:20 Heat of formation + Delta-G solvation = -63.665414 kcal Electronic energy + Delta-G solvation = -23551.024750 eV Core-core repulsion = 19591.310777 eV Total energy + Delta-G solvation = -3959.713973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.94724 -43.31395 -41.15131 -40.05872 -37.95659 -36.34792 -35.46674 -34.27150 -33.84906 -31.63570 -30.34619 -29.36412 -26.54439 -25.16365 -23.57254 -23.04319 -21.65822 -21.51205 -20.63286 -19.45533 -19.19016 -18.33055 -17.66585 -17.18512 -17.07474 -17.06963 -16.68073 -16.49860 -16.21637 -16.07908 -15.49615 -15.48609 -15.14044 -14.90363 -14.47278 -14.25059 -14.14849 -13.93551 -13.73614 -13.05421 -12.97997 -12.53675 -12.45299 -12.00991 -11.90679 -11.59004 -11.56629 -11.14147 -10.68521 -10.39650 -10.30929 -9.57272 -9.40097 -8.46248 -6.08690 -0.76156 0.09697 1.26450 1.30359 1.33683 1.43711 1.77013 1.79347 1.92697 1.94552 2.20100 2.53531 2.80095 2.83002 3.10008 3.17335 3.55580 3.65121 3.84865 3.97396 4.08338 4.20052 4.36288 4.37789 4.42142 4.53214 4.82620 4.94017 5.06554 5.17123 5.46839 5.54047 5.87160 6.25945 6.35007 6.47004 6.69071 6.77339 6.88480 7.27559 7.76576 8.70210 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.003013 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.653848 B = 9290.002410 C =10439.510367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.118 3.882 13 N -0.701 5.701 14 C 0.567 3.433 15 O -0.566 6.566 16 C -0.106 4.106 17 C -0.094 4.094 18 C 0.081 3.919 19 F -0.135 7.135 20 C -0.069 4.069 21 C 0.048 3.952 22 N -0.526 5.526 23 C 0.293 3.707 24 N -0.581 5.581 25 H 0.442 0.558 26 C 0.077 3.923 27 H 0.281 0.719 28 H 0.393 0.607 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.413 0.587 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.829 -7.196 0.024 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.780 3.220 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.216 5.216 10 C 0.230 3.770 11 O -0.501 6.501 12 C -0.009 4.009 13 N -0.355 5.355 14 C 0.356 3.644 15 O -0.447 6.447 16 C -0.112 4.112 17 C -0.114 4.114 18 C 0.060 3.940 19 F -0.113 7.113 20 C -0.089 4.089 21 C -0.071 4.071 22 N -0.246 5.246 23 C 0.006 3.994 24 N -0.193 5.193 25 H 0.285 0.715 26 C -0.038 4.038 27 H 0.091 0.909 28 H 0.229 0.771 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 25.213 -7.890 0.029 26.419 hybrid contribution -1.460 1.521 -0.006 2.109 sum 23.753 -6.369 0.023 24.592 Atomic orbital electron populations 1.69784 1.08126 1.29499 1.49188 1.26093 0.96420 1.02683 0.95664 0.85433 0.79627 0.76901 0.80065 1.18080 1.19998 1.15326 1.19029 0.81009 0.95263 1.50816 0.91890 1.41900 1.06094 1.07443 1.66135 1.20509 0.90088 0.83910 0.82503 1.90540 1.70773 1.32324 1.56423 1.20976 0.89610 0.84530 1.05799 1.45620 1.07046 1.09285 1.73505 1.18060 0.81861 0.88447 0.76061 1.90672 1.55644 1.45935 1.52468 1.18439 0.90146 0.92409 1.10208 1.21277 1.00917 0.90334 0.98920 1.16928 0.86608 0.83981 1.06521 1.91538 1.67692 1.57802 1.94290 1.20422 0.89253 1.00353 0.98882 1.18823 0.91412 0.90909 1.05912 1.70571 1.08597 1.21166 1.24260 1.26602 0.95515 0.83650 0.93587 1.43431 1.04371 1.11568 1.59891 0.71477 1.18711 0.88347 0.92413 1.04334 0.90914 0.77125 0.87102 0.87006 0.74705 0.82653 0.81814 0.71161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.76 13.96 21.67 0.30 -53.46 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.96 36.90 27.74 68.60 1.90 38.80 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 7 C -0.33 -18.43 10.16 84.04 0.85 -17.58 16 8 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 9 N -0.58 -25.37 5.09 -306.99 -1.56 -26.93 16 10 C 0.44 18.33 7.85 87.66 0.69 19.02 16 11 O -0.61 -30.58 15.24 -3.05 -0.05 -30.62 16 12 C 0.12 3.50 6.15 85.63 0.53 4.03 16 13 N -0.70 -19.92 5.48 -469.99 -2.57 -22.50 16 14 C 0.57 15.17 7.76 86.69 0.67 15.84 16 15 O -0.57 -16.10 15.28 -4.01 -0.06 -16.16 16 16 C -0.11 -2.52 5.88 -20.08 -0.12 -2.64 16 17 C -0.09 -2.09 9.51 22.62 0.22 -1.88 16 18 C 0.08 1.75 7.27 22.29 0.16 1.91 16 19 F -0.13 -3.04 17.25 44.97 0.78 -2.26 16 20 C -0.07 -1.39 10.06 22.58 0.23 -1.16 16 21 C 0.05 1.05 7.22 39.40 0.28 1.34 16 22 N -0.53 -10.29 11.28 -192.04 -2.17 -12.46 16 23 C 0.29 3.54 12.97 180.04 2.34 5.88 16 24 N -0.58 -9.37 6.00 -190.47 -1.14 -10.52 16 25 H 0.44 6.23 7.71 -92.71 -0.72 5.51 16 26 C 0.08 1.70 6.88 39.24 0.27 1.97 16 27 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.39 14.28 5.76 -92.71 -0.53 13.74 16 29 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.41 12.07 5.46 -92.71 -0.51 11.56 16 32 H 0.16 3.29 6.39 -2.91 -0.02 3.27 16 33 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.27 0.02 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -75.37 308.69 1.42 -73.95 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.59 Total: 35.42 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 6.59 Total: 26.74 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -7.15 Total: -125.87 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.11 Total: -46.78 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.90 Total: 38.80 kcal Total: -75.37 1.42 -73.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.286 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds