Wall clock time and date at job start Fri Apr 10 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 111.00233 * 2 1 4 4 C 1.53049 * 109.36962 * 176.80960 * 3 2 1 5 5 N 1.46956 * 109.37889 * 58.38792 * 4 3 2 6 6 C 1.38409 * 110.99759 * 176.82522 * 5 4 3 7 7 N 1.32493 * 119.22023 * 359.72915 * 6 5 4 8 8 C 1.32272 * 120.74221 * 179.71774 * 7 6 5 9 9 C 1.38607 * 119.19729 * 0.54856 * 8 7 6 10 10 C 1.50701 * 120.71982 * 179.70949 * 9 8 7 11 11 N 1.46903 * 109.47030 * 270.02119 * 10 9 8 12 12 C 1.46894 * 111.00053 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47253 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47296 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00053 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00008 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99940 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46883 * 89.99689 * 18 16 14 20 20 H 1.48501 * 109.47105 * 209.99537 * 18 16 14 21 21 H 1.48494 * 109.47401 * 329.99963 * 18 16 14 22 22 C 1.38605 * 118.55685 * 359.72757 * 9 8 7 23 23 N 1.32272 * 119.19981 * 0.02562 * 22 9 8 24 24 C 1.46957 * 110.88202 * 300.71439 * 5 4 3 25 25 C 1.46955 * 111.00423 * 236.19937 * 2 1 3 26 26 H 1.09008 * 109.47123 * 59.99941 * 1 2 3 27 27 H 1.08999 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47073 * 300.00316 * 1 2 3 29 29 H 1.09005 * 109.49150 * 56.83886 * 3 2 1 30 30 H 1.08999 * 109.50586 * 296.79217 * 3 2 1 31 31 H 1.09002 * 109.49200 * 178.36943 * 4 3 2 32 32 H 1.09002 * 109.48985 * 298.41362 * 4 3 2 33 33 H 1.07998 * 120.40297 * 180.30312 * 8 7 6 34 34 H 1.08997 * 109.47237 * 30.02058 * 10 9 8 35 35 H 1.08999 * 109.46971 * 150.02475 * 10 9 8 36 36 H 1.00907 * 110.99769 * 303.95576 * 11 10 9 37 37 H 1.09002 * 109.46879 * 299.99659 * 12 11 10 38 38 H 1.09003 * 109.47164 * 59.99660 * 12 11 10 39 39 H 1.09000 * 109.47503 * 299.99789 * 13 12 11 40 40 H 1.09003 * 109.47224 * 59.99806 * 13 12 11 41 41 H 0.97007 * 119.99929 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.40313 * 180.02562 * 22 9 8 43 43 H 1.08997 * 109.47347 * 299.31758 * 24 5 4 44 44 H 1.09002 * 109.50396 * 179.27890 * 24 5 4 45 45 H 1.09002 * 109.48806 * 303.15815 * 25 2 1 46 46 H 1.09003 * 109.48675 * 63.21848 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0505 0.5657 -1.0594 6 6 5.4346 0.5657 -1.0588 7 7 6.0810 1.2137 -0.1009 8 6 7.4032 1.2288 -0.0681 9 6 8.1117 0.5658 -1.0579 10 6 9.6187 0.5662 -1.0575 11 7 10.1082 1.7173 -1.8278 12 6 11.5766 1.7500 -1.8498 13 6 12.0478 2.9594 -2.6599 14 6 13.5542 2.9932 -2.6819 15 1 14.1191 2.2284 -2.1698 16 6 14.2114 4.0001 -3.3568 17 7 15.5260 4.0293 -3.3765 18 14 13.2343 5.3225 -4.2433 19 1 12.9754 6.4525 -3.3152 20 1 14.0089 5.8100 -5.4128 21 1 11.9420 4.7565 -4.7066 22 6 7.4040 -0.0972 -2.0482 23 7 6.0817 -0.0773 -2.0198 24 6 3.5234 -0.8061 -1.0597 25 6 1.9957 -0.7632 -1.1400 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6013 1.9129 0.8602 30 1 1.6937 1.8777 -0.9171 31 1 3.9178 2.3449 0.0513 32 1 3.8253 0.8483 1.0109 33 1 7.9245 1.7546 0.7181 34 1 9.9818 0.6344 -0.0321 35 1 9.9824 -0.3557 -1.5113 36 1 9.7328 1.7116 -2.7645 37 1 11.9536 1.8262 -0.8299 38 1 11.9535 0.8362 -2.3092 39 1 11.6708 2.8828 -3.6798 40 1 11.6708 3.8734 -2.2009 41 1 15.9884 4.7379 -3.8510 42 1 7.9258 -0.6238 -2.8336 43 1 3.8253 -1.3115 -0.1424 44 1 3.9178 -1.3473 -1.9197 45 1 1.6014 -1.7790 -1.1110 46 1 1.6938 -0.2821 -2.0704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344323093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:24 Heat of formation + Delta-G solvation = 75.102933 kcal Electronic energy + Delta-G solvation = -24099.132800 eV Core-core repulsion = 20638.281430 eV Total energy + Delta-G solvation = -3460.851370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47357 -39.46368 -36.72407 -35.66379 -33.90148 -33.23339 -31.86124 -31.39193 -29.78765 -28.43485 -25.69913 -25.22207 -24.27208 -23.51261 -23.22815 -21.84739 -20.45687 -20.30799 -18.21112 -17.83085 -16.79698 -15.97772 -15.74427 -15.49129 -15.48667 -15.24142 -14.91690 -14.56133 -14.46252 -14.39589 -13.98146 -13.60078 -13.50009 -12.97810 -12.92672 -12.66760 -12.61368 -12.31357 -12.21701 -11.73674 -11.43262 -11.39389 -11.34175 -11.10134 -10.98172 -10.91180 -10.34709 -10.21661 -9.82855 -9.77506 -9.28798 -9.24344 -8.84897 -8.56103 -8.54619 -8.05180 -6.06431 -4.05138 0.79726 1.01207 2.87464 3.31893 3.38955 3.43527 3.44315 3.58836 3.98158 4.33230 4.44609 4.52975 4.55147 4.56493 4.63289 4.71579 4.78951 4.87167 4.94104 4.96405 5.08308 5.10349 5.13519 5.28229 5.36722 5.41850 5.48478 5.50728 5.54474 5.62151 5.70040 5.85079 6.04997 6.12037 6.19299 6.28057 6.47929 6.56342 6.60122 6.71684 7.01341 7.06938 7.33515 7.50702 7.66045 7.83104 7.99151 8.50153 8.97280 9.55880 11.06729 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.002128 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.098636 B =13152.069237 C =13478.110163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.053 3.947 4 C 0.073 3.927 5 N -0.463 5.463 6 C 0.484 3.516 7 N -0.551 5.551 8 C 0.193 3.807 9 C -0.208 4.208 10 C 0.109 3.891 11 N -0.691 5.691 12 C 0.073 3.927 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.176 3.824 23 N -0.530 5.530 24 C 0.070 3.930 25 C 0.056 3.944 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.336 0.664 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.021 0.979 41 H 0.263 0.737 42 H 0.168 0.832 43 H 0.052 0.948 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.474 -10.795 7.137 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.075 4.075 4 C -0.054 4.054 5 N -0.183 5.183 6 C 0.128 3.872 7 N -0.269 5.269 8 C 0.025 3.975 9 C -0.214 4.214 10 C -0.021 4.021 11 N -0.322 5.322 12 C -0.055 4.055 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 C 0.009 3.991 23 N -0.248 5.248 24 C -0.056 4.056 25 C -0.072 4.072 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.188 0.812 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.185 0.815 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.105 0.895 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -30.451 -10.266 7.600 33.022 hybrid contribution 0.791 0.250 -1.341 1.577 sum -29.660 -10.016 6.258 31.925 Atomic orbital electron populations 1.22349 0.86787 1.02239 1.00899 1.62193 1.08196 1.14077 1.42794 1.22282 0.94235 0.89350 1.01645 1.22103 0.93152 0.99375 0.90808 1.58587 1.01408 1.15555 1.42767 1.20937 0.90591 0.89436 0.86272 1.68355 1.10773 1.23011 1.24811 1.22994 0.88208 0.90483 0.95770 1.21536 0.98760 1.02185 0.98913 1.20656 0.87847 0.93179 1.00458 1.60690 1.10704 1.41172 1.19593 1.21993 0.83486 0.98967 1.01008 1.19550 0.96852 0.93671 0.94734 1.21052 0.89426 1.12034 1.33574 0.91065 1.25006 0.94763 0.97717 0.95917 1.69914 1.07194 1.33765 1.43294 0.86738 0.80476 0.82267 0.79542 1.20227 1.21479 1.19026 1.23010 0.88477 0.92270 0.95372 1.67975 1.10099 1.22378 1.24316 1.22249 0.94429 0.86200 1.02767 1.22214 0.93658 0.99085 0.92284 0.95420 0.91228 0.91150 0.89468 0.93729 0.88822 0.91963 0.81232 0.89860 0.94184 0.84665 0.91483 0.95714 0.96850 0.96072 0.92699 0.81532 0.92998 0.88316 0.89499 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.60 60.06 0.58 0.72 16 2 N -0.55 -4.22 4.97 -242.76 -1.21 -5.43 16 3 C 0.05 0.42 5.62 -3.77 -0.02 0.39 16 4 C 0.07 0.71 4.77 -3.77 -0.02 0.70 16 5 N -0.46 -5.23 4.77 -175.23 -0.84 -6.06 16 6 C 0.48 6.29 7.17 -322.79 -2.32 3.98 16 7 N -0.55 -7.10 8.69 -13.93 -0.12 -7.22 16 8 C 0.19 2.30 11.00 -17.23 -0.19 2.11 16 9 C -0.21 -2.43 5.43 -104.35 -0.57 -3.00 16 10 C 0.11 1.32 5.86 -4.97 -0.03 1.29 16 11 N -0.69 -10.80 6.49 -115.06 -0.75 -11.54 16 12 C 0.07 1.40 5.62 -3.83 -0.02 1.37 16 13 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 14 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 18 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 C 0.18 2.04 11.00 -17.23 -0.19 1.85 16 23 N -0.53 -6.89 9.72 -13.93 -0.14 -7.02 16 24 C 0.07 0.65 5.46 -3.77 -0.02 0.63 16 25 C 0.06 0.42 5.62 -3.77 -0.02 0.40 16 26 H 0.03 0.15 8.14 -51.92 -0.42 -0.27 16 27 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.97 7.80 -51.93 -0.40 0.57 16 32 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 33 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.34 5.12 8.72 -39.29 -0.34 4.78 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 40 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.94 7.64 -51.93 -0.40 0.54 16 45 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -32.36 370.39 -12.55 -44.91 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.83 Total: -0.27 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.37 Total: -3.16 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -2.27 Total: -64.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.36 -12.55 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344323093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.013 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds