Wall clock time and date at job start Fri Apr 10 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 111.00233 * 2 1 4 4 C 1.53049 * 109.36962 * 176.80960 * 3 2 1 5 5 N 1.46956 * 109.37889 * 58.38792 * 4 3 2 6 6 C 1.38409 * 110.99759 * 176.82522 * 5 4 3 7 7 N 1.32493 * 119.22023 * 359.72915 * 6 5 4 8 8 C 1.32272 * 120.74221 * 179.71774 * 7 6 5 9 9 C 1.38607 * 119.19729 * 0.54856 * 8 7 6 10 10 C 1.50701 * 120.71982 * 179.70949 * 9 8 7 11 11 N 1.46903 * 109.47030 * 270.02119 * 10 9 8 12 12 C 1.46894 * 111.00053 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47253 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47296 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00053 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00008 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99940 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46883 * 89.99689 * 18 16 14 20 20 H 1.48501 * 109.47105 * 209.99537 * 18 16 14 21 21 H 1.48494 * 109.47401 * 329.99963 * 18 16 14 22 22 C 1.38605 * 118.55685 * 359.72757 * 9 8 7 23 23 N 1.32272 * 119.19981 * 0.02562 * 22 9 8 24 24 C 1.46957 * 110.88202 * 300.71439 * 5 4 3 25 25 C 1.46955 * 111.00423 * 236.19937 * 2 1 3 26 26 H 1.09008 * 109.47123 * 59.99941 * 1 2 3 27 27 H 1.08999 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47073 * 300.00316 * 1 2 3 29 29 H 1.09005 * 109.49150 * 56.83886 * 3 2 1 30 30 H 1.08999 * 109.50586 * 296.79217 * 3 2 1 31 31 H 1.09002 * 109.49200 * 178.36943 * 4 3 2 32 32 H 1.09002 * 109.48985 * 298.41362 * 4 3 2 33 33 H 1.07998 * 120.40297 * 180.30312 * 8 7 6 34 34 H 1.08997 * 109.47237 * 30.02058 * 10 9 8 35 35 H 1.08999 * 109.46971 * 150.02475 * 10 9 8 36 36 H 1.00907 * 110.99769 * 303.95576 * 11 10 9 37 37 H 1.09002 * 109.46879 * 299.99659 * 12 11 10 38 38 H 1.09003 * 109.47164 * 59.99660 * 12 11 10 39 39 H 1.09000 * 109.47503 * 299.99789 * 13 12 11 40 40 H 1.09003 * 109.47224 * 59.99806 * 13 12 11 41 41 H 0.97007 * 119.99929 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.40313 * 180.02562 * 22 9 8 43 43 H 1.08997 * 109.47347 * 299.31758 * 24 5 4 44 44 H 1.09002 * 109.50396 * 179.27890 * 24 5 4 45 45 H 1.09002 * 109.48806 * 303.15815 * 25 2 1 46 46 H 1.09003 * 109.48675 * 63.21848 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0505 0.5657 -1.0594 6 6 5.4346 0.5657 -1.0588 7 7 6.0810 1.2137 -0.1009 8 6 7.4032 1.2288 -0.0681 9 6 8.1117 0.5658 -1.0579 10 6 9.6187 0.5662 -1.0575 11 7 10.1082 1.7173 -1.8278 12 6 11.5766 1.7500 -1.8498 13 6 12.0478 2.9594 -2.6599 14 6 13.5542 2.9932 -2.6819 15 1 14.1191 2.2284 -2.1698 16 6 14.2114 4.0001 -3.3568 17 7 15.5260 4.0293 -3.3765 18 14 13.2343 5.3225 -4.2433 19 1 12.9754 6.4525 -3.3152 20 1 14.0089 5.8100 -5.4128 21 1 11.9420 4.7565 -4.7066 22 6 7.4040 -0.0972 -2.0482 23 7 6.0817 -0.0773 -2.0198 24 6 3.5234 -0.8061 -1.0597 25 6 1.9957 -0.7632 -1.1400 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6013 1.9129 0.8602 30 1 1.6937 1.8777 -0.9171 31 1 3.9178 2.3449 0.0513 32 1 3.8253 0.8483 1.0109 33 1 7.9245 1.7546 0.7181 34 1 9.9818 0.6344 -0.0321 35 1 9.9824 -0.3557 -1.5113 36 1 9.7328 1.7116 -2.7645 37 1 11.9536 1.8262 -0.8299 38 1 11.9535 0.8362 -2.3092 39 1 11.6708 2.8828 -3.6798 40 1 11.6708 3.8734 -2.2009 41 1 15.9884 4.7379 -3.8510 42 1 7.9258 -0.6238 -2.8336 43 1 3.8253 -1.3115 -0.1424 44 1 3.9178 -1.3473 -1.9197 45 1 1.6014 -1.7790 -1.1110 46 1 1.6938 -0.2821 -2.0704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344323093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:24 Heat of formation + Delta-G solvation = 52.203242 kcal Electronic energy + Delta-G solvation = -24100.125805 eV Core-core repulsion = 20638.281430 eV Total energy + Delta-G solvation = -3461.844375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.36089 -40.19044 -37.84982 -36.59516 -35.07855 -34.81927 -33.29627 -32.07837 -31.20718 -29.32202 -26.91492 -26.06802 -25.33970 -24.37243 -24.25128 -22.79971 -22.22117 -21.02227 -19.02647 -18.95086 -18.74398 -16.96792 -16.69830 -16.36757 -16.29154 -16.11974 -15.96743 -15.76083 -15.47459 -15.37484 -15.11737 -14.73151 -14.56554 -14.43644 -14.33037 -13.69679 -13.56545 -13.14849 -13.04522 -12.88848 -12.77235 -12.42285 -12.17482 -12.09847 -12.02664 -11.97863 -11.84332 -11.70800 -11.61686 -11.39812 -11.07530 -10.76484 -10.20829 -9.51744 -9.38286 -9.26100 -8.29339 -6.33313 -0.12869 0.11129 1.37768 1.38296 1.50648 2.05730 2.36566 2.64762 2.89786 3.06579 3.12345 3.42328 3.58427 3.71473 3.81945 3.84996 3.93435 3.97448 4.09308 4.15525 4.28879 4.46614 4.49271 4.53367 4.60493 4.62117 4.68215 4.73533 4.75955 4.79898 4.84853 4.93746 4.98093 5.00813 5.04077 5.21191 5.30735 5.50910 5.51469 5.64126 5.66280 5.96704 5.99000 6.09190 6.18040 6.25889 6.48516 6.75601 7.07494 7.31654 8.87063 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.002128 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.098636 B =13152.069237 C =13478.110163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.059 3.941 4 C 0.078 3.922 5 N -0.471 5.471 6 C 0.473 3.527 7 N -0.564 5.564 8 C 0.186 3.814 9 C -0.208 4.208 10 C 0.115 3.885 11 N -0.693 5.693 12 C 0.088 3.912 13 C -0.007 4.007 14 C -0.532 4.532 15 H 0.035 0.965 16 C 0.005 3.995 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.248 1.248 22 C 0.176 3.824 23 N -0.546 5.546 24 C 0.074 3.926 25 C 0.061 3.939 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.340 0.660 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.191 0.809 43 H 0.044 0.956 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.908 -10.874 6.926 34.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.069 4.069 4 C -0.049 4.049 5 N -0.192 5.192 6 C 0.117 3.883 7 N -0.283 5.283 8 C 0.020 3.980 9 C -0.214 4.214 10 C -0.014 4.014 11 N -0.324 5.324 12 C -0.041 4.041 13 C -0.045 4.045 14 C -0.570 4.570 15 H 0.054 0.946 16 C -0.192 4.192 17 N -0.590 5.590 18 Si 0.776 3.224 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.172 1.172 22 C 0.009 3.991 23 N -0.264 5.264 24 C -0.052 4.052 25 C -0.067 4.067 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.202 0.798 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.207 0.793 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -32.920 -10.366 7.402 35.298 hybrid contribution 1.560 0.197 -1.220 1.990 sum -31.360 -10.168 6.181 33.542 Atomic orbital electron populations 1.22398 0.85302 1.03096 1.01354 1.62214 1.09557 1.13779 1.42802 1.22242 0.92754 0.89815 1.02119 1.22064 0.94479 0.98467 0.89927 1.58688 1.00804 1.16543 1.43123 1.21263 0.91364 0.89368 0.86350 1.68403 1.11261 1.23562 1.25101 1.23332 0.88122 0.90325 0.96250 1.21432 0.98263 1.02583 0.99130 1.20641 0.87989 0.92425 1.00385 1.60568 1.08243 1.43339 1.20235 1.21636 0.85782 0.96871 0.99804 1.19455 0.93579 0.95669 0.95764 1.21423 0.92029 1.10926 1.32632 0.94629 1.25972 0.95751 1.00434 0.96997 1.70062 1.09158 1.35051 1.44775 0.85636 0.79438 0.79089 0.78288 1.19454 1.21079 1.17192 1.23423 0.88184 0.91838 0.95674 1.68035 1.10788 1.22968 1.24625 1.22258 0.95685 0.85163 1.02143 1.22203 0.92263 1.00129 0.92121 0.95268 0.90215 0.90358 0.87934 0.94150 0.89772 0.92948 0.79755 0.89132 0.92681 0.84210 0.91933 0.95769 0.96387 0.96236 0.92505 0.79269 0.93760 0.88681 0.87649 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 127.69 1.23 1.46 16 2 N -0.56 -7.72 4.97 -921.94 -4.58 -12.30 16 3 C 0.06 0.86 5.62 86.31 0.49 1.34 16 4 C 0.08 1.49 4.77 86.31 0.41 1.90 16 5 N -0.47 -10.41 4.77 -708.32 -3.38 -13.79 16 6 C 0.47 11.99 7.17 261.48 1.88 13.87 16 7 N -0.56 -14.16 8.69 -197.98 -1.72 -15.88 16 8 C 0.19 4.20 11.00 84.71 0.93 5.13 16 9 C -0.21 -4.47 5.43 -19.69 -0.11 -4.58 16 10 C 0.12 2.53 5.86 85.56 0.50 3.03 16 11 N -0.69 -20.13 6.49 -517.95 -3.36 -23.49 16 12 C 0.09 3.23 5.62 86.30 0.49 3.71 16 13 C -0.01 -0.31 4.30 29.85 0.13 -0.19 16 14 C -0.53 -30.36 9.66 25.60 0.25 -30.12 16 15 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 16 C 0.01 0.32 5.47 84.66 0.46 0.78 16 17 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 18 Si 0.95 44.66 27.47 68.60 1.88 46.55 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 22 C 0.18 3.75 11.00 84.71 0.93 4.68 16 23 N -0.55 -13.61 9.72 -197.98 -1.92 -15.53 16 24 C 0.07 1.33 5.46 86.31 0.47 1.80 16 25 C 0.06 0.83 5.62 86.31 0.49 1.32 16 26 H 0.03 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.08 0.57 8.13 -2.39 -0.02 0.55 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.74 7.80 -2.39 -0.02 1.72 16 32 H 0.05 1.10 8.04 -2.39 -0.02 1.08 16 33 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.09 1.88 8.10 -2.39 -0.02 1.87 16 35 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.34 9.51 8.72 -89.69 -0.78 8.73 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 40 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 41 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 42 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 1.75 7.64 -2.39 -0.02 1.73 16 45 H 0.11 1.04 8.13 -2.39 -0.02 1.02 16 46 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -69.56 370.39 -4.13 -73.69 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.12 Total: 15.79 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 8.54 Total: 4.14 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -14.67 Total: -140.17 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -69.56 -4.13 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344323093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.896 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds