Wall clock time and date at job start Fri Apr 10 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48504 * 109.47305 * 270.00589 * 3 2 1 5 5 H 1.48504 * 109.47168 * 30.00100 * 3 2 1 6 6 H 1.48494 * 109.47178 * 150.00384 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47384 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46961 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99675 * 180.02562 * 11 10 9 13 13 O 1.21352 * 120.00364 * 359.97438 * 12 11 10 14 14 C 1.49339 * 119.99525 * 180.02562 * 12 11 10 15 15 O 1.21379 * 120.00404 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99525 * 180.02562 * 14 12 11 17 17 C 1.39893 * 119.99621 * 185.52702 * 16 14 12 18 18 C 1.38908 * 120.05566 * 24.83162 * 17 16 14 19 19 C 1.38131 * 120.05669 * 180.02562 * 18 17 16 20 20 C 1.38289 * 120.21103 * 0.02562 * 19 18 17 21 21 C 1.38640 * 120.17806 * 0.02562 * 20 19 18 22 22 C 1.39101 * 119.87215 * 359.67519 * 21 20 19 23 23 O 1.36556 * 108.67427 * 179.77641 * 22 21 20 24 24 C 1.43989 * 105.54206 * 343.16853 * 23 22 21 25 25 O 1.36519 * 131.47725 * 179.97438 * 21 20 19 26 26 H 0.97003 * 120.00045 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46984 * 59.99490 * 9 7 2 28 28 H 1.09002 * 109.46787 * 300.00035 * 9 7 2 29 29 H 1.08993 * 109.47175 * 59.99835 * 10 9 7 30 30 H 1.09002 * 109.47049 * 299.99705 * 10 9 7 31 31 H 0.96999 * 120.00033 * 359.97438 * 11 10 9 32 32 H 0.96996 * 120.00349 * 5.80406 * 16 14 12 33 33 H 1.08002 * 119.97080 * 359.97137 * 18 17 16 34 34 H 1.08002 * 119.89615 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.91145 * 179.97438 * 20 19 18 36 36 H 1.09000 * 110.57945 * 268.27083 * 24 23 22 37 37 H 1.09000 * 110.70693 * 145.44274 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0007 13 8 3.4000 -6.0981 -0.0003 14 6 1.4397 -7.3913 -0.0019 15 8 0.2259 -7.3913 -0.0028 16 7 2.1136 -8.5585 -0.0010 17 6 1.4191 -9.7671 -0.1188 18 6 0.1740 -9.7970 -0.7338 19 6 -0.5120 -10.9903 -0.8497 20 6 0.0364 -12.1591 -0.3543 21 6 1.2781 -12.1398 0.2622 22 6 1.9764 -10.9422 0.3762 23 8 3.1567 -11.1839 1.0190 24 6 2.9965 -12.4681 1.6501 25 8 2.0242 -13.1355 0.8240 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8906 31 1 0.5426 -4.9307 -0.0011 32 1 3.0797 -8.5607 0.0854 33 1 -0.2585 -8.8862 -1.1210 34 1 -1.4802 -11.0104 -1.3280 35 1 -0.5044 -13.0894 -0.4472 36 1 2.6201 -12.3513 2.6663 37 1 3.9384 -13.0167 1.6522 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344418560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:28 Heat of formation + Delta-G solvation = -99.411432 kcal Electronic energy + Delta-G solvation = -23716.359458 eV Core-core repulsion = 19846.262975 eV Total energy + Delta-G solvation = -3870.096483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.54484 -40.91901 -38.95374 -37.69118 -36.70214 -35.49501 -34.62583 -32.90448 -30.30650 -30.09792 -29.71958 -26.19251 -25.94189 -24.30110 -23.43623 -22.43029 -21.09396 -20.37721 -19.07437 -18.55070 -17.98232 -17.49541 -16.90832 -16.58586 -16.24390 -15.92233 -15.62725 -14.98266 -14.97452 -14.57152 -14.51226 -14.47272 -13.71537 -13.63584 -13.36823 -13.27730 -12.96841 -12.62860 -12.35761 -12.15681 -11.51134 -11.43906 -11.26806 -11.09364 -10.75485 -10.69130 -10.45061 -9.85592 -9.52475 -9.27840 -8.79595 -8.51958 -8.45635 -8.35118 -6.13304 -4.17152 0.64927 0.82780 1.52697 2.23618 2.37215 3.05763 3.13504 3.27160 3.33590 3.37021 3.40054 3.61844 4.24944 4.32445 4.36230 4.47988 4.55162 4.74665 4.79750 4.99356 5.02371 5.23776 5.27196 5.60206 5.83420 5.91509 6.07540 6.11617 6.17768 6.20117 6.48964 6.61879 6.76155 6.82162 7.35487 7.49671 7.53005 7.72683 7.83476 8.11096 8.25020 8.88378 9.48049 10.98160 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.002331 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.536094 B =12011.189715 C =12613.207485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.682 5.682 12 C 0.500 3.500 13 O -0.527 6.527 14 C 0.511 3.489 15 O -0.496 6.496 16 N -0.643 5.643 17 C 0.177 3.823 18 C -0.124 4.124 19 C -0.085 4.085 20 C -0.118 4.118 21 C 0.053 3.947 22 C -0.004 4.004 23 O -0.307 6.307 24 C 0.216 3.784 25 O -0.308 6.308 26 H 0.263 0.737 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.411 0.589 32 H 0.427 0.573 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.949 -26.194 0.675 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.333 5.333 12 C 0.279 3.721 13 O -0.405 6.405 14 C 0.294 3.706 15 O -0.369 6.369 16 N -0.290 5.290 17 C 0.081 3.919 18 C -0.144 4.144 19 C -0.103 4.103 20 C -0.138 4.138 21 C 0.008 3.992 22 C -0.050 4.050 23 O -0.224 6.224 24 C 0.104 3.896 25 O -0.224 6.224 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.266 0.734 33 H 0.180 0.820 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.102 0.898 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.026 -26.058 0.680 26.087 hybrid contribution 0.652 0.763 0.289 1.044 sum 1.678 -25.295 0.970 25.369 Atomic orbital electron populations 1.69957 1.06100 1.27009 1.49987 1.25000 0.94908 0.99469 0.94887 0.86490 0.79796 0.82909 0.78223 1.20523 1.21138 1.19722 1.21002 0.93233 0.90202 1.51838 0.92142 1.19362 0.94171 0.90816 0.98300 1.21988 0.96329 0.80495 1.01523 1.46234 1.11854 1.05653 1.69521 1.19656 0.87653 0.84844 0.79941 1.90765 1.13008 1.87271 1.49417 1.20687 0.87799 0.85405 0.76753 1.90730 1.13281 1.87292 1.45639 1.43165 1.12292 1.03281 1.70221 1.16802 0.93363 0.81669 1.00030 1.21353 0.93111 1.00604 0.99327 1.20881 1.00245 0.90480 0.98719 1.20126 0.91749 1.00086 1.01823 1.19523 0.93875 0.84939 1.00896 1.19329 0.87517 0.94344 1.03827 1.87359 1.31329 1.37498 1.66189 1.25610 0.93415 0.77725 0.92857 1.87370 1.44674 1.29438 1.60952 0.92735 0.95600 0.95617 0.91684 0.91672 0.75261 0.73422 0.82020 0.83735 0.84513 0.89793 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.12 2.38 5.61 -4.04 -0.02 2.36 16 11 N -0.68 -11.77 5.55 -60.77 -0.34 -12.10 16 12 C 0.50 8.23 7.89 -11.64 -0.09 8.14 16 13 O -0.53 -9.69 16.48 5.50 0.09 -9.60 16 14 C 0.51 7.33 7.69 -11.64 -0.09 7.25 16 15 O -0.50 -7.53 13.64 5.47 0.07 -7.46 16 16 N -0.64 -8.12 5.36 -10.21 -0.05 -8.17 16 17 C 0.18 2.13 6.44 -83.59 -0.54 1.60 16 18 C -0.12 -1.36 8.71 -39.37 -0.34 -1.70 16 19 C -0.08 -0.72 10.03 -39.60 -0.40 -1.12 16 20 C -0.12 -1.02 10.06 -39.41 -0.40 -1.42 16 21 C 0.05 0.55 7.14 -39.11 -0.28 0.27 16 22 C 0.00 -0.04 7.05 -38.92 -0.27 -0.32 16 23 O -0.31 -3.29 11.40 -45.88 -0.52 -3.81 16 24 C 0.22 1.59 8.90 101.05 0.90 2.49 16 25 O -0.31 -3.00 11.40 -45.75 -0.52 -3.53 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.41 6.65 7.94 -40.82 -0.32 6.32 16 32 H 0.43 5.07 8.26 -40.82 -0.34 4.73 16 33 H 0.16 1.89 5.78 -52.49 -0.30 1.59 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -31.63 330.16 -6.56 -38.19 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.89 Total: 5.79 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.09 Total: 4.73 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.34 Total: -45.30 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.88 Total: -24.39 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.63 -6.56 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344418560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.225 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds