Wall clock time and date at job start Fri Apr 10 2020 17:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48504 * 109.47305 * 270.00589 * 3 2 1 5 5 H 1.48504 * 109.47168 * 30.00100 * 3 2 1 6 6 H 1.48494 * 109.47178 * 150.00384 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47384 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46961 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99675 * 180.02562 * 11 10 9 13 13 O 1.21352 * 120.00364 * 359.97438 * 12 11 10 14 14 C 1.49339 * 119.99525 * 180.02562 * 12 11 10 15 15 O 1.21379 * 120.00404 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99525 * 180.02562 * 14 12 11 17 17 C 1.39893 * 119.99621 * 185.52702 * 16 14 12 18 18 C 1.38908 * 120.05566 * 24.83162 * 17 16 14 19 19 C 1.38131 * 120.05669 * 180.02562 * 18 17 16 20 20 C 1.38289 * 120.21103 * 0.02562 * 19 18 17 21 21 C 1.38640 * 120.17806 * 0.02562 * 20 19 18 22 22 C 1.39101 * 119.87215 * 359.67519 * 21 20 19 23 23 O 1.36556 * 108.67427 * 179.77641 * 22 21 20 24 24 C 1.43989 * 105.54206 * 343.16853 * 23 22 21 25 25 O 1.36519 * 131.47725 * 179.97438 * 21 20 19 26 26 H 0.97003 * 120.00045 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46984 * 59.99490 * 9 7 2 28 28 H 1.09002 * 109.46787 * 300.00035 * 9 7 2 29 29 H 1.08993 * 109.47175 * 59.99835 * 10 9 7 30 30 H 1.09002 * 109.47049 * 299.99705 * 10 9 7 31 31 H 0.96999 * 120.00033 * 359.97438 * 11 10 9 32 32 H 0.96996 * 120.00349 * 5.80406 * 16 14 12 33 33 H 1.08002 * 119.97080 * 359.97137 * 18 17 16 34 34 H 1.08002 * 119.89615 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.91145 * 179.97438 * 20 19 18 36 36 H 1.09000 * 110.57945 * 268.27083 * 24 23 22 37 37 H 1.09000 * 110.70693 * 145.44274 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0007 13 8 3.4000 -6.0981 -0.0003 14 6 1.4397 -7.3913 -0.0019 15 8 0.2259 -7.3913 -0.0028 16 7 2.1136 -8.5585 -0.0010 17 6 1.4191 -9.7671 -0.1188 18 6 0.1740 -9.7970 -0.7338 19 6 -0.5120 -10.9903 -0.8497 20 6 0.0364 -12.1591 -0.3543 21 6 1.2781 -12.1398 0.2622 22 6 1.9764 -10.9422 0.3762 23 8 3.1567 -11.1839 1.0190 24 6 2.9965 -12.4681 1.6501 25 8 2.0242 -13.1355 0.8240 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8906 31 1 0.5426 -4.9307 -0.0011 32 1 3.0797 -8.5607 0.0854 33 1 -0.2585 -8.8862 -1.1210 34 1 -1.4802 -11.0104 -1.3280 35 1 -0.5044 -13.0894 -0.4472 36 1 2.6201 -12.3513 2.6663 37 1 3.9384 -13.0167 1.6522 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344418560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:27 Heat of formation + Delta-G solvation = -122.594278 kcal Electronic energy + Delta-G solvation = -23717.364742 eV Core-core repulsion = 19846.262975 eV Total energy + Delta-G solvation = -3871.101766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.27939 -42.06843 -40.18748 -38.61712 -37.46675 -36.92736 -35.80484 -34.81319 -31.75308 -31.01754 -30.77997 -27.53746 -26.79711 -25.75627 -24.26429 -23.52925 -22.74652 -21.56484 -20.20717 -19.38853 -18.77694 -18.57483 -18.37672 -17.79874 -17.28353 -17.14896 -16.62660 -16.51910 -16.23852 -15.90951 -15.70354 -15.23526 -15.08354 -14.78614 -14.40222 -14.30820 -14.07457 -13.92889 -13.47017 -13.26495 -12.96624 -12.95221 -12.56531 -12.46865 -12.29507 -12.26430 -11.69553 -11.56535 -11.42479 -10.76244 -10.61738 -10.25947 -9.32883 -9.14662 -8.23528 -6.34418 -0.28608 0.06053 0.43811 1.06459 1.43792 1.43904 1.55364 1.68513 1.94363 2.35176 2.43038 2.49192 2.56289 3.11744 3.23160 3.49803 3.77615 3.89649 4.05723 4.17426 4.26447 4.35227 4.37390 4.44610 4.48084 4.80837 4.81447 5.01541 5.09606 5.16794 5.33306 5.41974 5.43487 5.55246 5.71922 5.79390 6.02350 6.12495 6.20166 6.49924 6.76015 6.82388 7.35180 8.88450 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.037149 B = 0.002331 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.536094 B =12011.189715 C =12613.207485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.019 3.981 10 C 0.137 3.863 11 N -0.682 5.682 12 C 0.506 3.494 13 O -0.545 6.545 14 C 0.520 3.480 15 O -0.506 6.506 16 N -0.633 5.633 17 C 0.151 3.849 18 C -0.136 4.136 19 C -0.075 4.075 20 C -0.110 4.110 21 C 0.042 3.958 22 C -0.014 4.014 23 O -0.325 6.325 24 C 0.206 3.794 25 O -0.316 6.316 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.417 0.583 32 H 0.429 0.571 33 H 0.153 0.847 34 H 0.177 0.823 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -27.632 0.691 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.019 4.019 10 C 0.015 3.985 11 N -0.333 5.333 12 C 0.286 3.714 13 O -0.424 6.424 14 C 0.302 3.698 15 O -0.381 6.381 16 N -0.279 5.279 17 C 0.056 3.944 18 C -0.156 4.156 19 C -0.093 4.093 20 C -0.129 4.129 21 C -0.003 4.003 22 C -0.061 4.061 23 O -0.242 6.242 24 C 0.096 3.904 25 O -0.233 6.233 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.254 0.746 32 H 0.268 0.732 33 H 0.170 0.830 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.119 0.881 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.256 -27.544 0.699 27.582 hybrid contribution 0.577 1.052 0.300 1.237 sum 1.833 -26.492 0.999 26.574 Atomic orbital electron populations 1.70072 1.07645 1.28027 1.50979 1.25896 0.95768 1.03220 0.94458 0.85422 0.78630 0.78362 0.78491 1.19794 1.20791 1.18835 1.21450 0.93762 0.91575 1.51514 0.91735 1.19180 0.94333 0.91763 0.96620 1.21527 0.95148 0.80525 1.01350 1.46027 1.12046 1.05188 1.70053 1.19931 0.87414 0.85281 0.78814 1.90752 1.13914 1.87674 1.50038 1.20090 0.87387 0.85021 0.77321 1.90733 1.13404 1.87279 1.46637 1.43030 1.12361 1.03130 1.69369 1.17009 0.94175 0.81397 1.01825 1.21427 0.93048 1.01369 0.99745 1.21238 1.01019 0.89364 0.97667 1.20531 0.91057 1.01230 1.00071 1.19835 0.94510 0.84734 1.01247 1.19451 0.88009 0.94543 1.04081 1.87329 1.31276 1.39071 1.66496 1.26094 0.94602 0.76738 0.92959 1.87349 1.45019 1.29605 1.61303 0.92564 0.97186 0.97279 0.91889 0.91794 0.74600 0.73191 0.82998 0.80579 0.81673 0.88118 0.81945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.02 0.91 5.09 29.85 0.15 1.07 16 10 C 0.14 5.57 5.61 86.38 0.48 6.06 16 11 N -0.68 -23.75 5.55 -464.54 -2.58 -26.32 16 12 C 0.51 16.67 7.89 87.23 0.69 17.36 16 13 O -0.55 -20.02 16.48 -3.25 -0.05 -20.08 16 14 C 0.52 14.94 7.69 87.23 0.67 15.61 16 15 O -0.51 -15.35 13.64 -3.34 -0.05 -15.39 16 16 N -0.63 -15.98 5.36 -304.56 -1.63 -17.61 16 17 C 0.15 3.57 6.44 38.24 0.25 3.82 16 18 C -0.14 -2.87 8.71 22.40 0.20 -2.67 16 19 C -0.07 -1.09 10.03 22.26 0.22 -0.87 16 20 C -0.11 -1.61 10.06 22.38 0.23 -1.39 16 21 C 0.04 0.81 7.14 22.57 0.16 0.97 16 22 C -0.01 -0.32 7.05 22.70 0.16 -0.16 16 23 O -0.32 -6.70 11.40 -76.71 -0.87 -7.57 16 24 C 0.21 2.69 8.90 113.37 1.01 3.70 16 25 O -0.32 -5.59 11.40 -76.27 -0.87 -6.46 16 26 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.42 13.68 7.94 -92.71 -0.74 12.95 16 32 H 0.43 10.26 8.26 -92.71 -0.77 9.50 16 33 H 0.15 3.50 5.78 -2.91 -0.02 3.48 16 34 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -67.61 330.16 0.81 -66.80 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.35 Total: 20.67 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 4.91 Total: 14.86 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.92 Total: -97.83 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -1.84 Total: -49.50 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -67.61 0.81 -66.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344418560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.794 kcal (2) G-P(sol) polarization free energy of solvation -67.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds