Wall clock time and date at job start Fri Apr 10 2020 17:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38254 * 120.00210 * 269.72660 * 13 10 9 15 15 C 1.38214 * 120.00017 * 179.80910 * 14 13 10 16 16 C 1.38260 * 120.00040 * 0.41856 * 15 14 13 17 17 C 1.38216 * 119.99748 * 359.81604 * 16 15 14 18 18 S 1.76196 * 119.99709 * 179.97438 * 17 16 15 19 19 N 1.65600 * 107.21836 * 270.02108 * 18 17 16 20 20 O 1.42099 * 106.40471 * 23.55787 * 18 17 16 21 21 O 1.42106 * 106.40107 * 156.48048 * 18 17 16 22 22 C 1.38220 * 119.99762 * 90.00067 * 13 10 9 23 23 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 25 25 H 1.08002 * 119.99931 * 0.02562 * 14 13 10 26 26 H 1.08007 * 120.00195 * 180.21025 * 15 14 13 27 27 H 1.07997 * 119.99690 * 179.78924 * 16 15 14 28 28 H 0.96999 * 120.00183 * 150.00635 * 19 18 17 29 29 H 0.96998 * 119.99688 * 329.99674 * 19 18 17 30 30 H 1.07994 * 119.99844 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3161 -3.4270 1.6039 15 6 5.0024 -3.5051 2.8010 16 6 4.4063 -4.0903 3.9028 17 6 3.1226 -4.5938 3.8079 18 16 2.3632 -5.3402 5.2117 19 7 2.7355 -6.9533 5.1708 20 8 3.0184 -4.8061 6.3539 21 8 0.9602 -5.2468 5.0060 22 6 2.4346 -4.5122 2.6115 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 -0.0068 25 1 4.7830 -2.9728 0.7424 26 1 6.0057 -3.1121 2.8750 27 1 4.9439 -4.1544 4.8372 28 1 2.8114 -7.4547 5.9977 29 1 2.8776 -7.3967 4.3199 30 1 1.4317 -4.9057 2.5373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359485914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:06 Heat of formation + Delta-G solvation = -152.831657 kcal Electronic energy + Delta-G solvation = -20958.588989 eV Core-core repulsion = 17392.706664 eV Total energy + Delta-G solvation = -3565.882324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.022 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26613 -38.34425 -38.12320 -37.01794 -36.76323 -36.49534 -34.11705 -32.87700 -32.60284 -32.37205 -26.46317 -24.65798 -24.38339 -21.04813 -20.30503 -20.07485 -19.54289 -18.42763 -18.34869 -17.96321 -17.27232 -17.07910 -16.70623 -16.37162 -16.15124 -15.76884 -15.32276 -15.03964 -14.36291 -13.85019 -13.55091 -13.49847 -13.30556 -13.27161 -13.15373 -13.11640 -13.05741 -13.00919 -12.88683 -12.31041 -12.20237 -12.08924 -11.85876 -11.63790 -11.36669 -10.81524 -10.40125 -10.19680 -8.33526 -5.91188 -0.73318 -0.50676 -0.33506 -0.12785 1.47840 1.49509 1.60434 1.93976 2.18121 2.30259 2.60596 2.65824 2.90078 3.17809 3.31806 3.59280 3.71070 3.84306 3.93611 4.30333 4.40935 4.64073 4.73095 4.93149 5.02546 5.07412 5.23080 5.58816 5.61393 6.32482 6.70972 6.94372 7.29161 8.85127 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.005190 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.703991 B = 5393.499015 C = 5760.288562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.019 4.019 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.314 4.314 8 H 0.114 0.886 9 N -0.975 5.975 10 S 2.667 3.333 11 O -1.008 7.008 12 O -0.987 6.987 13 C -0.697 4.697 14 C 0.022 3.978 15 C -0.152 4.152 16 C 0.026 3.974 17 C -0.702 4.702 18 S 2.731 3.269 19 N -1.228 6.228 20 O -0.981 6.981 21 O -0.997 6.997 22 C 0.052 3.948 23 H 0.272 0.728 24 H 0.406 0.594 25 H 0.153 0.847 26 H 0.181 0.819 27 H 0.180 0.820 28 H 0.433 0.567 29 H 0.430 0.570 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -10.193 10.188 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.221 4.221 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.448 4.448 8 H 0.131 0.869 9 N -0.728 5.728 10 S 2.759 3.241 11 O -0.998 6.998 12 O -0.977 6.977 13 C -0.783 4.783 14 C 0.003 3.997 15 C -0.171 4.171 16 C 0.006 3.994 17 C -0.790 4.790 18 S 2.818 3.182 19 N -0.909 5.909 20 O -0.970 6.970 21 O -0.986 6.986 22 C 0.032 3.968 23 H 0.081 0.919 24 H 0.241 0.759 25 H 0.171 0.829 26 H 0.199 0.801 27 H 0.198 0.802 28 H 0.267 0.733 29 H 0.260 0.740 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.797 -10.157 10.176 17.980 hybrid contribution 0.018 0.759 -0.259 0.803 sum 10.816 -9.397 9.917 17.425 Atomic orbital electron populations 1.69806 1.07384 1.28664 1.51192 1.26047 0.96391 1.02502 0.97148 0.85016 0.79187 0.77528 0.77622 1.17376 1.20670 1.20640 1.19573 0.92592 0.83422 1.49202 0.86855 1.51379 1.16808 1.19262 1.85372 1.03079 0.72796 0.72320 0.75902 1.93445 1.60559 1.57483 1.88330 1.93473 1.61815 1.86997 1.55414 1.31516 1.09677 1.14071 1.23065 1.21600 0.90745 0.87671 0.99694 1.21885 1.02647 1.00800 0.91755 1.21642 0.90790 0.86898 1.00021 1.30892 1.08703 1.22118 1.17251 1.00538 0.72770 0.73056 0.71830 1.52675 1.91457 1.28206 1.18515 1.93556 1.76277 1.78854 1.48319 1.93604 1.32531 1.86534 1.85912 1.20777 0.98072 0.87916 0.90072 0.91855 0.75864 0.82945 0.80119 0.80233 0.73303 0.74009 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.04 13.06 21.65 0.28 -50.75 16 2 C -0.02 -0.98 5.50 84.86 0.47 -0.52 16 3 Si 0.98 40.13 29.55 68.60 2.03 42.16 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.31 -15.73 9.63 84.04 0.81 -14.92 16 8 H 0.11 5.21 7.82 -2.91 -0.02 5.19 16 9 N -0.98 -47.35 5.75 -54.26 -0.31 -47.66 16 10 S 2.67 113.53 5.70 -56.49 -0.32 113.21 16 11 O -1.01 -45.64 17.28 -128.00 -2.21 -47.86 16 12 O -0.99 -44.85 16.98 -128.00 -2.17 -47.02 16 13 C -0.70 -24.80 5.89 22.27 0.13 -24.67 16 14 C 0.02 0.66 9.52 22.27 0.21 0.87 16 15 C -0.15 -3.34 10.05 22.27 0.22 -3.12 16 16 C 0.03 0.55 9.52 22.27 0.21 0.76 16 17 C -0.70 -18.28 5.97 22.27 0.13 -18.14 16 18 S 2.73 62.26 6.28 -56.49 -0.35 61.90 16 19 N -1.23 -15.28 9.52 37.02 0.35 -14.93 16 20 O -0.98 -25.32 17.28 -128.00 -2.21 -27.53 16 21 O -1.00 -31.80 17.28 -128.00 -2.21 -34.01 16 22 C 0.05 1.72 9.00 22.27 0.20 1.92 16 23 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 24 H 0.41 20.62 8.02 -96.74 -0.78 19.85 16 25 H 0.15 4.27 7.61 -2.91 -0.02 4.25 16 26 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 27 H 0.18 2.56 7.62 -2.91 -0.02 2.54 16 28 H 0.43 3.27 8.96 -96.75 -0.87 2.40 16 29 H 0.43 3.77 8.96 -96.75 -0.87 2.90 16 30 H 0.15 4.90 7.18 -2.91 -0.02 4.88 16 Total: -1.00 -76.57 297.65 -6.02 -82.59 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -1.27 Total: 27.72 kcal Atomic # 6 Polarization: -60.21 SS G_CDS: 2.39 Total: -57.82 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: 0.32 Total: -113.34 kcal Atomic # 8 Polarization: -147.62 SS G_CDS: -8.81 Total: -156.43 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 175.79 SS G_CDS: -0.68 Total: 175.11 kcal Total: -76.57 -6.02 -82.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359485914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.237 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds