Wall clock time and date at job start Fri Apr 10 2020 17:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00112 * 2 1 4 4 C 1.46900 * 110.99945 * 123.95199 * 2 1 3 5 5 C 1.52993 * 109.47486 * 75.62915 * 4 2 1 6 6 H 1.08999 * 110.63823 * 301.40335 * 5 4 2 7 7 C 1.55156 * 110.71809 * 64.53681 * 5 4 2 8 8 C 1.54911 * 101.58221 * 153.86644 * 7 5 4 9 9 N 1.47425 * 104.83323 * 322.99385 * 8 7 5 10 10 S 1.65592 * 125.64721 * 204.09074 * 9 8 7 11 11 O 1.42106 * 106.40416 * 336.47961 * 10 9 8 12 12 O 1.42096 * 106.40264 * 203.56360 * 10 9 8 13 13 N 1.65597 * 107.21851 * 90.02237 * 10 9 8 14 14 C 1.46499 * 120.00252 * 269.99555 * 13 10 9 15 15 C 1.46500 * 120.00202 * 89.99923 * 13 10 9 16 16 C 1.50697 * 109.47357 * 265.00181 * 15 13 10 17 17 H 1.08001 * 119.99425 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00415 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99864 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47033 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47428 * 299.99943 * 20 18 16 23 23 H 1.48496 * 109.47312 * 60.00343 * 20 18 16 24 24 C 1.47024 * 108.70164 * 24.35290 * 9 8 7 25 25 H 1.08997 * 109.47365 * 296.04678 * 1 2 3 26 26 H 1.09003 * 109.46615 * 56.04847 * 1 2 3 27 27 H 1.08996 * 109.46572 * 176.04688 * 1 2 3 28 28 H 1.09001 * 109.47285 * 188.79841 * 3 2 1 29 29 H 1.09004 * 109.47234 * 308.79818 * 3 2 1 30 30 H 1.09001 * 109.47096 * 68.79361 * 3 2 1 31 31 H 1.09005 * 109.46993 * 315.62701 * 4 2 1 32 32 H 1.09006 * 109.47554 * 195.63038 * 4 2 1 33 33 H 1.09002 * 111.00795 * 35.79352 * 7 5 4 34 34 H 1.09002 * 111.00662 * 271.93928 * 7 5 4 35 35 H 1.08994 * 110.36720 * 204.14711 * 8 7 5 36 36 H 1.09011 * 110.36386 * 81.82840 * 8 7 5 37 37 H 1.08998 * 109.47124 * 270.00404 * 14 13 10 38 38 H 1.08999 * 109.46613 * 30.00221 * 14 13 10 39 39 H 1.08997 * 109.47226 * 150.00008 * 14 13 10 40 40 H 1.08999 * 109.47574 * 144.99545 * 15 13 10 41 41 H 1.09009 * 109.46565 * 24.99945 * 15 13 10 42 42 H 0.96997 * 120.00548 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88121 * 118.13253 * 24 9 8 44 44 H 1.08997 * 109.88190 * 239.29710 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8440 -2.2626 0.8587 6 1 0.7980 -2.5179 0.6892 7 6 2.7156 -2.6860 -0.3531 8 6 2.9671 -4.1837 -0.0471 9 7 3.1219 -4.2488 1.4176 10 16 3.9362 -5.4257 2.2506 11 8 3.9549 -6.5719 1.4107 12 8 3.3957 -5.4341 3.5647 13 7 5.5083 -4.9258 2.3947 14 6 6.4876 -5.2822 1.3651 15 6 5.9198 -4.1271 3.5519 16 6 5.8644 -2.6635 3.1974 17 1 5.5540 -2.3587 2.2089 18 6 6.2098 -1.7135 4.1351 19 7 6.5873 -2.0846 5.3389 20 14 6.1417 0.1007 3.6954 21 1 6.5576 0.9103 4.8688 22 1 7.0582 0.3692 2.5582 23 1 4.7547 0.4650 3.3100 24 6 2.4283 -3.0991 2.0165 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3632 -1.0252 -0.0708 28 1 3.0738 1.3467 -0.1572 29 1 1.5245 1.9414 -0.8009 30 1 1.7786 1.8439 0.9581 31 1 1.4398 -0.5062 2.0387 32 1 3.0496 -0.5277 1.2795 33 1 3.6523 -2.1290 -0.3743 34 1 2.1695 -2.5648 -1.2886 35 1 3.8775 -4.5240 -0.5403 36 1 2.1149 -4.7842 -0.3655 37 1 6.9571 -6.2314 1.6233 38 1 5.9850 -5.3754 0.4024 39 1 7.2493 -4.5049 1.3036 40 1 6.9382 -4.3943 3.8342 41 1 5.2476 -4.3245 4.3870 42 1 6.8307 -1.4164 5.9985 43 1 1.6256 -3.4479 2.6663 44 1 3.1346 -2.4963 2.5873 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408163513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:20 Heat of formation + Delta-G solvation = -67.653640 kcal Electronic energy + Delta-G solvation = -25235.777855 eV Core-core repulsion = 21736.054202 eV Total energy + Delta-G solvation = -3499.723654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.80946 -36.69596 -36.60502 -35.44802 -35.17366 -32.49698 -31.32409 -29.14317 -27.77473 -27.64879 -25.98595 -25.06291 -22.41478 -22.05499 -21.87197 -19.88838 -18.38409 -17.25165 -16.88477 -16.31739 -16.15442 -15.38357 -15.19611 -14.92190 -14.62807 -14.36518 -13.59049 -13.51004 -13.32954 -13.11545 -12.91937 -12.51990 -12.48320 -12.27302 -12.17474 -11.93696 -11.75966 -11.66824 -11.51015 -11.43345 -11.18028 -11.13040 -11.02949 -10.79665 -10.71373 -10.69876 -10.51511 -10.35773 -10.09390 -9.78462 -8.57613 -8.49917 -8.39084 -8.01881 -6.12747 -4.19120 1.27699 3.20573 3.27257 3.28128 3.54380 3.88655 4.18476 4.33021 4.70412 4.86588 4.88944 5.09009 5.17275 5.21849 5.28170 5.38072 5.43358 5.50870 5.59492 5.62176 5.67967 5.77861 5.82112 5.84197 5.86371 5.96699 6.09407 6.18211 6.21610 6.24993 6.34390 6.48508 6.53707 6.65457 6.82975 6.98376 6.99465 7.34330 7.44349 7.65125 7.84665 8.14709 8.85782 9.46124 10.95378 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.007589 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.199193 B = 3688.482581 C = 5617.614558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.544 5.544 3 C 0.024 3.976 4 C 0.060 3.940 5 C -0.088 4.088 6 H 0.077 0.923 7 C -0.108 4.108 8 C 0.123 3.877 9 N -1.014 6.014 10 S 2.800 3.200 11 O -0.997 6.997 12 O -0.976 6.976 13 N -0.997 5.997 14 C 0.107 3.893 15 C 0.244 3.756 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.275 1.275 24 C 0.124 3.876 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.265 0.735 43 H 0.062 0.938 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 2.973 -11.509 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.268 5.268 3 C -0.124 4.124 4 C -0.068 4.068 5 C -0.109 4.109 6 H 0.096 0.904 7 C -0.147 4.147 8 C -0.003 4.003 9 N -0.853 5.853 10 S 2.810 3.190 11 O -0.982 6.982 12 O -0.960 6.960 13 N -0.839 5.839 14 C -0.039 4.039 15 C 0.122 3.878 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.002 4.002 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.804 1.924 -11.348 14.491 hybrid contribution -0.007 1.945 0.490 2.006 sum -8.811 3.869 -10.858 14.509 Atomic orbital electron populations 1.22427 0.87781 1.02208 1.00122 1.61942 1.07630 1.13567 1.43613 1.22388 1.01109 0.88854 1.00064 1.22200 1.01076 0.92731 0.90827 1.22137 0.99667 0.93600 0.95446 0.90419 1.22656 1.00248 0.94125 0.97623 1.21923 1.00826 0.97439 0.80128 1.59062 1.68666 1.42045 1.15551 1.01302 0.72772 0.72465 0.72464 1.93532 1.87469 1.47260 1.69903 1.93565 1.78311 1.86708 1.37405 1.57703 1.24907 1.68779 1.32475 1.21208 0.93387 1.00024 0.89316 1.19215 0.97444 0.89202 0.81984 1.21519 1.46270 0.91100 0.98780 0.91872 1.24951 0.95079 0.99001 0.94833 1.69920 1.44554 1.34222 1.04065 0.86672 0.78535 0.84945 0.77921 1.21270 1.20196 1.20074 1.21706 0.96570 0.86848 0.95058 0.95813 0.91743 0.91239 0.91206 0.91641 0.95706 0.94181 0.89912 0.90529 0.90323 0.91395 0.92106 0.93790 0.93019 0.90859 0.94467 0.93152 0.92536 0.91920 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.40 60.06 0.56 0.79 16 2 N -0.54 -6.33 4.72 -251.26 -1.18 -7.52 16 3 C 0.02 0.26 9.52 60.07 0.57 0.83 16 4 C 0.06 0.80 4.30 -3.83 -0.02 0.78 16 5 C -0.09 -1.17 2.97 -88.78 -0.26 -1.43 16 6 H 0.08 0.92 6.96 -51.93 -0.36 0.56 16 7 C -0.11 -1.37 6.31 -24.58 -0.16 -1.52 16 8 C 0.12 1.73 6.98 -2.53 -0.02 1.72 16 9 N -1.01 -17.77 3.75 -111.41 -0.42 -18.19 16 10 S 2.80 58.06 6.31 -107.50 -0.68 57.38 16 11 O -1.00 -21.18 16.80 -57.17 -0.96 -22.14 16 12 O -0.98 -23.34 16.27 -57.17 -0.93 -24.27 16 13 N -1.00 -21.11 3.23 -123.05 -0.40 -21.50 16 14 C 0.11 1.89 10.31 59.85 0.62 2.51 16 15 C 0.24 6.09 5.41 -5.19 -0.03 6.06 16 16 C -0.54 -13.81 8.95 -34.44 -0.31 -14.12 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 20 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 C 0.12 2.07 6.60 -3.06 -0.02 2.05 16 25 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 26 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 27 H 0.07 0.64 6.89 -51.93 -0.36 0.28 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 30 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 31 H 0.04 0.53 7.96 -51.93 -0.41 0.12 16 32 H 0.08 1.26 7.94 -51.93 -0.41 0.85 16 33 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 39 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.05 1.39 6.91 -51.92 -0.36 1.03 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.64 7.38 -51.93 -0.38 1.25 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -31.10 364.79 -10.22 -41.32 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.71 Total: -0.55 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 0.85 Total: -0.72 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.26 Total: -71.66 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -1.89 Total: -46.41 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 58.06 SS G_CDS: -0.68 Total: 57.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.10 -10.22 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408163513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.330 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds