Wall clock time and date at job start Fri Apr 10 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00121 * 2 1 4 4 C 1.46904 * 111.00319 * 123.95336 * 2 1 3 5 5 C 1.52997 * 109.47067 * 164.14194 * 4 2 1 6 6 H 1.08998 * 110.77834 * 59.45006 * 5 4 2 7 7 C 1.55156 * 110.72465 * 296.20342 * 5 4 2 8 8 C 1.54913 * 101.57980 * 206.13662 * 7 5 4 9 9 N 1.47426 * 104.83489 * 37.01023 * 8 7 5 10 10 S 1.65598 * 125.64961 * 155.83333 * 9 8 7 11 11 O 1.42097 * 106.40245 * 203.56446 * 10 9 8 12 12 O 1.42106 * 106.40207 * 336.48889 * 10 9 8 13 13 N 1.65596 * 107.21567 * 90.02383 * 10 9 8 14 14 C 1.46510 * 120.00325 * 270.00128 * 13 10 9 15 15 C 1.46503 * 120.00307 * 90.00199 * 13 10 9 16 16 C 1.50703 * 109.47046 * 94.99514 * 15 13 10 17 17 H 1.07996 * 120.00427 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99680 * 180.02562 * 16 15 13 19 19 N 1.31510 * 119.99944 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00199 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47093 * 89.99542 * 20 18 16 22 22 H 1.48495 * 109.46891 * 209.99650 * 20 18 16 23 23 H 1.48503 * 109.46908 * 329.99487 * 20 18 16 24 24 C 1.47020 * 108.70047 * 335.86986 * 9 8 7 25 25 H 1.09000 * 109.46718 * 296.45827 * 1 2 3 26 26 H 1.08995 * 109.47194 * 56.46575 * 1 2 3 27 27 H 1.09002 * 109.46904 * 176.46088 * 1 2 3 28 28 H 1.09007 * 109.47417 * 183.95752 * 3 2 1 29 29 H 1.08998 * 109.47128 * 303.95371 * 3 2 1 30 30 H 1.08998 * 109.47102 * 63.95518 * 3 2 1 31 31 H 1.09004 * 109.46818 * 44.14599 * 4 2 1 32 32 H 1.08993 * 109.47183 * 284.14865 * 4 2 1 33 33 H 1.09000 * 111.00265 * 88.05951 * 7 5 4 34 34 H 1.09003 * 111.00344 * 324.21001 * 7 5 4 35 35 H 1.09004 * 110.36184 * 155.84856 * 8 7 5 36 36 H 1.09003 * 110.36460 * 278.16874 * 8 7 5 37 37 H 1.08998 * 109.47088 * 90.00009 * 14 13 10 38 38 H 1.09002 * 109.47311 * 210.00081 * 14 13 10 39 39 H 1.08997 * 109.46338 * 330.00102 * 14 13 10 40 40 H 1.08994 * 109.47727 * 214.99989 * 15 13 10 41 41 H 1.09004 * 109.46402 * 335.00220 * 15 13 10 42 42 H 0.96994 * 120.00338 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.88406 * 120.47580 * 24 9 8 44 44 H 1.09001 * 109.88236 * 241.48608 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4737 -1.0811 0.8998 6 1 4.0512 -0.1637 0.7860 7 6 3.6473 -1.9966 -0.3408 8 6 4.9796 -2.7156 -0.0126 9 7 4.9404 -2.9366 1.4445 10 16 5.7723 -4.1096 2.2655 11 8 5.0630 -4.3313 3.4767 12 8 6.0464 -5.1396 1.3256 13 7 7.2364 -3.4644 2.6924 14 6 8.3833 -3.5892 1.7893 15 6 7.3851 -2.7687 3.9731 16 6 7.9117 -3.7291 5.0082 17 1 8.1158 -4.7548 4.7390 18 6 8.1331 -3.2980 6.2991 19 7 8.5932 -4.1359 7.2023 20 14 7.7795 -1.5239 6.7650 21 1 6.3744 -1.4051 7.2305 22 1 8.6987 -1.1055 7.8536 23 1 7.9843 -0.6510 5.5812 24 6 4.0396 -1.9435 2.0477 25 1 -0.3633 0.4579 0.9200 26 1 -0.3633 0.5677 -0.8566 27 1 -0.3633 -1.0257 -0.0634 28 1 3.0829 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.4373 -1.6968 1.2384 32 1 1.8913 -0.1792 2.0501 33 1 3.7362 -1.4061 -1.2526 34 1 2.8269 -2.7101 -0.4176 35 1 5.0362 -3.6682 -0.5394 36 1 5.8271 -2.0835 -0.2778 37 1 8.4088 -2.7340 1.1140 38 1 9.3036 -3.6191 2.3726 39 1 8.2907 -4.5075 1.2094 40 1 8.0835 -1.9400 3.8576 41 1 6.4160 -2.3854 4.2928 42 1 8.7486 -3.8328 8.1105 43 1 3.2257 -2.4487 2.5677 44 1 4.5935 -1.3170 2.7469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408163514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:23 Heat of formation + Delta-G solvation = -59.819913 kcal Electronic energy + Delta-G solvation = -24509.882060 eV Core-core repulsion = 21010.498102 eV Total energy + Delta-G solvation = -3499.383958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.11850 -36.94909 -36.67284 -35.61127 -35.19366 -32.38391 -31.59323 -29.42221 -28.38287 -27.88360 -26.27455 -25.15504 -22.42245 -22.24980 -21.82048 -20.16450 -18.55735 -17.38068 -17.09544 -16.72140 -16.31048 -15.48590 -15.45678 -15.21295 -14.70779 -14.34326 -14.00048 -13.63806 -13.43424 -13.30239 -12.95292 -12.78641 -12.67631 -12.52927 -12.37354 -12.16320 -11.99547 -11.74678 -11.69502 -11.55867 -11.34623 -11.22784 -11.17219 -11.05787 -10.97556 -10.66724 -10.61080 -10.46351 -10.24696 -9.55705 -8.85334 -8.65054 -8.59727 -8.10982 -6.08586 -4.07927 1.09005 3.25865 3.30985 3.32337 3.44988 3.62356 4.05622 4.37475 4.46040 4.55158 4.63843 4.86594 4.97547 5.05608 5.14988 5.18611 5.21613 5.29302 5.31505 5.38981 5.51998 5.53493 5.57405 5.58324 5.61878 5.65616 5.86805 5.93661 5.94556 5.97362 6.15271 6.21046 6.34522 6.41895 6.55237 6.71264 6.71628 6.73801 7.08130 7.40096 7.57589 8.48812 8.96344 9.50270 11.05063 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.004451 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.858288 B = 6288.878515 C = 7270.431484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.061 3.939 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.106 4.106 8 C 0.113 3.887 9 N -1.023 6.023 10 S 2.794 3.206 11 O -0.957 6.957 12 O -0.988 6.988 13 N -0.991 5.991 14 C 0.095 3.905 15 C 0.228 3.772 16 C -0.532 4.532 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.872 3.128 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.125 3.875 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.070 0.930 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 11.251 -16.787 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.113 4.113 6 H 0.102 0.898 7 C -0.145 4.145 8 C -0.012 4.012 9 N -0.862 5.862 10 S 2.803 3.197 11 O -0.941 6.941 12 O -0.973 6.973 13 N -0.833 5.833 14 C -0.051 4.051 15 C 0.105 3.895 16 C -0.571 4.571 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.001 4.001 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.282 10.060 -16.772 23.094 hybrid contribution -0.184 1.737 1.205 2.122 sum -12.466 11.796 -15.566 23.170 Atomic orbital electron populations 1.22385 0.87292 1.02318 1.00401 1.61941 1.07738 1.13867 1.43282 1.22441 1.01177 0.88719 1.00356 1.22170 0.94938 0.98332 0.91269 1.22207 0.95199 0.98620 0.95270 0.89843 1.22639 0.96510 0.97831 0.97536 1.22040 0.98255 1.00725 0.80226 1.59402 1.60061 1.50463 1.16297 1.01624 0.72828 0.72722 0.72478 1.93626 1.72382 1.83618 1.44499 1.93524 1.85381 1.53507 1.64846 1.57485 1.24260 1.73900 1.27632 1.21370 0.90652 1.00199 0.92892 1.19420 0.97027 0.93149 0.79932 1.21386 1.43855 0.98422 0.93455 0.90419 1.24872 0.94492 0.97439 0.96156 1.69892 1.45092 1.34954 1.03362 0.86921 0.78895 0.85545 0.78778 1.19784 1.20911 1.18978 1.21639 0.93171 0.90104 0.95192 0.95714 0.91435 0.91277 0.91052 0.91543 0.95644 0.90279 0.94162 0.89958 0.90724 0.90250 0.92005 0.94264 0.90165 0.91307 0.94973 0.95514 0.92506 0.91177 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.54 60.07 0.57 0.74 16 2 N -0.54 -4.57 4.72 -251.26 -1.19 -5.75 16 3 C 0.02 0.16 9.39 60.06 0.56 0.72 16 4 C 0.06 0.56 4.28 -3.82 -0.02 0.54 16 5 C -0.09 -0.93 2.90 -88.79 -0.26 -1.19 16 6 H 0.08 0.79 6.83 -51.93 -0.35 0.43 16 7 C -0.11 -1.04 6.29 -24.58 -0.15 -1.20 16 8 C 0.11 1.36 7.10 -2.53 -0.02 1.34 16 9 N -1.02 -15.71 3.76 -111.41 -0.42 -16.13 16 10 S 2.79 56.69 6.31 -107.50 -0.68 56.01 16 11 O -0.96 -23.16 16.69 -57.17 -0.95 -24.12 16 12 O -0.99 -21.03 16.06 -57.17 -0.92 -21.95 16 13 N -0.99 -20.64 3.23 -123.04 -0.40 -21.04 16 14 C 0.10 1.64 10.68 59.85 0.64 2.28 16 15 C 0.23 5.45 4.15 -5.19 -0.02 5.42 16 16 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 18 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 20 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 24 C 0.13 1.68 6.59 -3.06 -0.02 1.66 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.07 0.52 6.72 -51.92 -0.35 0.17 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.02 0.18 8.11 -51.93 -0.42 -0.24 16 31 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.04 0.37 8.03 -51.93 -0.42 -0.05 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.08 0.97 7.78 -51.93 -0.40 0.56 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.14 7.02 -51.93 -0.36 0.78 16 40 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 41 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -34.92 361.25 -9.83 -44.75 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -7.67 Total: -3.38 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.85 Total: -3.35 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.23 Total: -69.84 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.87 Total: -46.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 56.69 SS G_CDS: -0.68 Total: 56.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.92 -9.83 -44.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408163514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.074 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds