Wall clock time and date at job start Fri Apr 10 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00139 * 2 1 4 4 H 1.48502 * 109.46958 * 270.00159 * 3 2 1 5 5 H 1.48503 * 109.47129 * 30.00023 * 3 2 1 6 6 H 1.48505 * 109.47340 * 150.00090 * 3 2 1 7 7 C 1.37880 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99947 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47358 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47193 * 54.15250 * 11 10 9 13 13 N 1.46900 * 109.47511 * 294.15656 * 11 10 9 14 14 C 1.50697 * 109.47111 * 174.15252 * 11 10 9 15 15 O 1.21284 * 119.99520 * 88.58861 * 14 11 10 16 16 N 1.34770 * 120.00064 * 268.30877 * 14 11 10 17 17 C 1.46497 * 120.00350 * 355.00122 * 16 14 11 18 18 C 1.53006 * 109.47009 * 95.33531 * 17 16 14 19 19 N 1.46900 * 109.47083 * 174.67329 * 18 17 16 20 20 C 1.46500 * 120.00060 * 175.00377 * 16 14 11 21 21 C 1.50704 * 109.47228 * 89.99882 * 20 16 14 22 22 C 1.38229 * 120.00054 * 269.72675 * 21 20 16 23 23 C 1.38239 * 119.99835 * 179.76554 * 22 21 20 24 24 C 1.38231 * 120.00132 * 0.48586 * 23 22 21 25 25 C 1.38236 * 119.99718 * 359.79162 * 24 23 22 26 26 C 1.38228 * 120.00398 * 359.95515 * 25 24 23 27 27 H 0.96996 * 119.99891 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46949 * 59.99915 * 9 7 2 29 29 H 1.09005 * 109.47024 * 300.00126 * 9 7 2 30 30 H 1.09005 * 109.47047 * 59.99615 * 10 9 7 31 31 H 1.08997 * 109.46787 * 300.00093 * 10 9 7 32 32 H 1.00901 * 110.99696 * 299.99845 * 13 11 10 33 33 H 1.00903 * 110.99868 * 63.95170 * 13 11 10 34 34 H 1.09000 * 109.47801 * 215.33761 * 17 16 14 35 35 H 1.09000 * 109.47244 * 335.33764 * 17 16 14 36 36 H 1.09001 * 109.46797 * 294.66909 * 18 17 16 37 37 H 1.08994 * 109.46923 * 54.67389 * 18 17 16 38 38 H 1.00908 * 111.00117 * 56.04421 * 19 18 17 39 39 H 1.00895 * 110.99892 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47440 * 210.00048 * 20 16 14 41 41 H 1.09001 * 109.47390 * 330.00282 * 20 16 14 42 42 H 1.08001 * 120.00360 * 0.02562 * 22 21 20 43 43 H 1.08010 * 119.99613 * 180.25471 * 23 22 21 44 44 H 1.08001 * 120.00189 * 179.76997 * 24 23 22 45 45 H 1.07997 * 119.99613 * 179.97438 * 25 24 23 46 46 H 1.07991 * 120.00513 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0216 -2.6367 0.0010 11 6 5.5515 -2.6367 0.0009 12 1 5.9149 -2.0349 0.8340 13 7 6.0412 -2.0699 -1.2627 14 6 6.0538 -4.0501 0.1456 15 8 6.2314 -4.7343 -0.8400 16 7 6.3109 -4.5520 1.3696 17 6 6.2076 -3.6914 2.5507 18 6 4.8239 -3.8563 3.1824 19 7 4.7638 -3.0928 4.4360 20 6 6.6937 -5.9581 1.5192 21 6 8.1929 -6.0829 1.4297 22 6 8.7969 -6.2944 0.2045 23 6 10.1725 -6.4040 0.1218 24 6 10.9432 -6.3121 1.2656 25 6 10.3387 -6.1063 2.4916 26 6 8.9636 -5.9915 2.5737 27 1 -0.4850 0.8400 0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 3.6585 -3.1503 -0.8893 31 1 3.6578 -3.1507 0.8907 32 1 5.7177 -2.6104 -2.0509 33 1 5.7718 -1.1017 -1.3532 34 1 6.9730 -3.9732 3.2738 35 1 6.3511 -2.6518 2.2564 36 1 4.0639 -3.4856 2.4945 37 1 4.6427 -4.9108 3.3903 38 1 4.9920 -2.1224 4.2797 39 1 3.8589 -3.1853 4.8726 40 1 6.3558 -6.3257 2.4881 41 1 6.2322 -6.5467 0.7263 42 1 8.1945 -6.3699 -0.6887 43 1 10.6447 -6.5652 -0.8362 44 1 12.0176 -6.4014 1.2014 45 1 10.9408 -6.0349 3.3853 46 1 8.4914 -5.8303 3.5314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424156704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:26 Heat of formation + Delta-G solvation = -15.117033 kcal Electronic energy + Delta-G solvation = -25524.990213 eV Core-core repulsion = 22027.933861 eV Total energy + Delta-G solvation = -3497.056352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34849 -38.99958 -36.43481 -35.79290 -34.04026 -32.88134 -31.75886 -30.97268 -30.40116 -27.93136 -27.39157 -25.84941 -23.47100 -22.77284 -22.31617 -21.43407 -20.37907 -18.81559 -17.65738 -17.00306 -16.77579 -16.46589 -15.70747 -15.47333 -15.18091 -14.88329 -14.75437 -14.33315 -14.24720 -14.10983 -13.55418 -13.47863 -13.38344 -13.04267 -12.80668 -12.73609 -12.55531 -12.25955 -12.03753 -11.89995 -11.47549 -11.40107 -11.23345 -11.04629 -10.92072 -10.33562 -10.15961 -9.91597 -9.49506 -9.37607 -9.00015 -8.92450 -8.78922 -8.68132 -8.61913 -8.35948 -6.17090 -4.17035 1.18429 1.32995 2.80440 2.96548 3.20347 3.28924 3.29244 3.78120 4.32271 4.39634 4.67676 4.73522 4.78152 4.85294 4.90064 4.99983 5.03153 5.11271 5.15632 5.19093 5.29455 5.38942 5.48218 5.55407 5.55884 5.62665 5.67967 5.89094 5.91564 5.98175 6.16383 6.27833 6.35258 6.42928 6.45734 6.54982 6.61290 6.91399 7.01485 7.04428 7.14958 7.25260 7.33748 7.47166 7.60962 7.72638 8.31983 8.39084 8.86678 9.43979 10.96054 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.003514 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.536323 B = 7966.391363 C = 8578.854478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.130 4.130 11 C 0.069 3.931 12 H 0.095 0.905 13 N -0.832 5.832 14 C 0.531 3.469 15 O -0.533 6.533 16 N -0.607 5.607 17 C 0.108 3.892 18 C 0.033 3.967 19 N -0.849 5.849 20 C 0.155 3.845 21 C -0.103 4.103 22 C -0.091 4.091 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.107 4.107 27 H 0.264 0.736 28 H 0.016 0.984 29 H 0.011 0.989 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.348 0.652 33 H 0.350 0.650 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.342 0.658 39 H 0.347 0.653 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.018 -10.440 7.080 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.170 4.170 11 C -0.046 4.046 12 H 0.112 0.888 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.408 6.408 16 N -0.341 5.341 17 C -0.015 4.015 18 C -0.099 4.099 19 N -0.378 5.378 20 C 0.033 3.967 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.126 4.126 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.249 -11.335 7.059 23.428 hybrid contribution -1.466 1.679 -0.588 2.305 sum 17.783 -9.657 6.471 21.246 Atomic orbital electron populations 1.69910 1.06334 1.27056 1.50507 1.25041 0.94748 0.99205 0.94388 0.86779 0.80258 0.83564 0.78663 1.20166 1.21289 1.19025 1.21046 0.89161 0.94503 1.51509 0.91118 1.19553 0.97561 0.91264 0.96184 1.22275 0.91174 1.01102 1.02447 1.21638 0.95770 0.91983 0.95186 0.88754 1.58793 1.66680 1.07542 1.03369 1.20770 0.75695 0.89342 0.82212 1.90611 1.51830 1.61164 1.37205 1.47878 1.68865 1.10601 1.06724 1.21619 0.97523 0.95315 0.87062 1.22377 0.97106 0.99267 0.91180 1.58733 1.37054 1.16431 1.25625 1.20324 0.90431 0.82745 1.03217 1.20245 0.96164 1.00482 0.93575 1.21261 0.94755 0.97278 0.97694 1.21183 0.94046 1.00642 0.98413 1.21153 0.99663 1.00150 0.92872 1.21094 0.94778 1.00974 0.97662 1.21063 0.93859 0.99725 0.97923 0.92584 0.96597 0.97060 0.91931 0.91744 0.83783 0.83539 0.89791 0.89831 0.93244 0.90971 0.84575 0.84059 0.89712 0.89146 0.85312 0.86221 0.86377 0.86254 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.18 3.82 -27.88 -0.11 -0.29 16 10 C -0.13 -2.43 4.77 -26.73 -0.13 -2.56 16 11 C 0.07 1.10 2.71 -68.87 -0.19 0.92 16 12 H 0.09 1.41 5.67 -51.92 -0.29 1.12 16 13 N -0.83 -13.32 9.05 -5.66 -0.05 -13.37 16 14 C 0.53 8.46 6.82 -10.99 -0.07 8.38 16 15 O -0.53 -9.75 15.22 5.55 0.08 -9.67 16 16 N -0.61 -7.79 2.46 -175.06 -0.43 -8.22 16 17 C 0.11 1.21 5.53 -4.04 -0.02 1.18 16 18 C 0.03 0.37 7.11 -3.82 -0.03 0.34 16 19 N -0.85 -8.74 9.62 -10.37 -0.10 -8.84 16 20 C 0.16 1.78 5.52 -5.19 -0.03 1.75 16 21 C -0.10 -1.21 5.46 -104.62 -0.57 -1.78 16 22 C -0.09 -1.14 9.56 -39.58 -0.38 -1.52 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 26 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 29 H 0.01 0.24 6.32 -51.93 -0.33 -0.09 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.18 5.46 -51.93 -0.28 0.90 16 32 H 0.35 5.70 8.55 -39.29 -0.34 5.37 16 33 H 0.35 5.40 7.58 -39.29 -0.30 5.10 16 34 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.08 0.96 5.63 -51.93 -0.29 0.66 16 36 H 0.05 0.68 5.46 -51.93 -0.28 0.40 16 37 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.34 3.38 8.99 -39.29 -0.35 3.03 16 39 H 0.35 3.35 9.08 -39.29 -0.36 3.00 16 40 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 41 H 0.09 1.13 7.44 -51.93 -0.39 0.74 16 42 H 0.13 1.75 7.40 -52.49 -0.39 1.37 16 43 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -31.52 370.52 -9.27 -40.80 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -6.93 Total: 16.63 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -3.53 Total: -12.78 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.19 Total: -56.61 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.52 -9.27 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424156704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.680 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds