Wall clock time and date at job start Fri Apr 10 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47169 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.47035 * 59.99878 * 3 2 1 7 7 C 1.37881 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99587 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46765 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47541 * 55.00056 * 11 10 9 13 13 N 1.46902 * 109.47353 * 294.99594 * 11 10 9 14 14 C 1.50706 * 109.46837 * 175.00078 * 11 10 9 15 15 O 1.21279 * 120.00254 * 99.99682 * 14 11 10 16 16 N 1.34776 * 119.99755 * 279.99712 * 14 11 10 17 17 C 1.47075 * 120.88410 * 359.71803 * 16 14 11 18 18 C 1.53240 * 108.52019 * 129.08761 * 17 16 14 19 19 N 1.46899 * 109.34005 * 53.83469 * 18 17 16 20 20 C 1.46899 * 110.99957 * 172.74686 * 19 18 17 21 21 C 1.52997 * 109.47123 * 201.02084 * 20 19 18 22 22 F 1.39903 * 109.47112 * 294.13765 * 21 20 19 23 23 F 1.39899 * 109.47086 * 54.13569 * 21 20 19 24 24 C 1.46895 * 111.26602 * 296.89231 * 19 18 17 25 25 C 1.47080 * 120.87931 * 179.97438 * 16 14 11 26 26 H 0.96999 * 120.00420 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47165 * 60.00325 * 9 7 2 28 28 H 1.09003 * 109.47226 * 300.00238 * 9 7 2 29 29 H 1.08996 * 109.47317 * 59.99988 * 10 9 7 30 30 H 1.09003 * 109.47044 * 299.99920 * 10 9 7 31 31 H 1.00891 * 111.00383 * 176.04884 * 13 11 10 32 32 H 1.00901 * 110.99923 * 300.01023 * 13 11 10 33 33 H 1.08996 * 109.63101 * 248.80274 * 17 16 14 34 34 H 1.09006 * 109.62685 * 9.38116 * 17 16 14 35 35 H 1.09007 * 109.49381 * 293.87282 * 18 17 16 36 36 H 1.09005 * 109.49360 * 173.79580 * 18 17 16 37 37 H 1.09002 * 109.47133 * 321.01654 * 20 19 18 38 38 H 1.09007 * 109.47320 * 81.02028 * 20 19 18 39 39 H 1.09003 * 109.47318 * 174.14006 * 21 20 19 40 40 H 1.09001 * 109.49895 * 303.14343 * 24 19 18 41 41 H 1.08998 * 109.49181 * 183.06253 * 24 19 18 42 42 H 1.08998 * 109.63242 * 350.62829 * 25 16 14 43 43 H 1.09010 * 109.62869 * 111.19993 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 1 0.7885 -5.0068 -0.8432 13 7 0.7283 -5.1189 1.2538 14 6 2.4551 -6.1298 -0.1250 15 8 2.7866 -6.7536 0.8608 16 7 2.9583 -6.4585 -1.3313 17 6 2.5650 -5.7191 -2.5403 18 6 3.8347 -5.2923 -3.2845 19 7 4.6777 -6.4712 -3.5242 20 6 5.8205 -6.1352 -4.3838 21 6 6.3619 -7.4100 -5.0339 22 9 6.8958 -8.2460 -4.0473 23 9 5.3230 -8.0736 -5.6952 24 6 5.1275 -7.0703 -2.2607 25 6 3.9112 -7.5697 -1.4744 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8906 31 1 0.1639 -5.9552 1.2510 32 1 1.3478 -5.1033 2.0500 33 1 1.9625 -6.3615 -3.1826 34 1 1.9911 -4.8361 -2.2590 35 1 4.3838 -4.5689 -2.6817 36 1 3.5626 -4.8397 -4.2381 37 1 5.4997 -5.4398 -5.1595 38 1 6.6038 -5.6730 -3.7828 39 1 7.1411 -7.1498 -5.7503 40 1 5.6587 -6.3222 -1.6721 41 1 5.7930 -7.9074 -2.4717 42 1 4.2273 -7.9103 -0.4884 43 1 3.4384 -8.3903 -2.0140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424159374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:32 Heat of formation + Delta-G solvation = -158.641653 kcal Electronic energy + Delta-G solvation = -26173.214102 eV Core-core repulsion = 22115.704525 eV Total energy + Delta-G solvation = -4057.509577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.78644 -47.79733 -41.53127 -39.30201 -36.91504 -35.90537 -34.83388 -32.31846 -31.93709 -31.19916 -28.42029 -27.31307 -25.57805 -24.51242 -23.37458 -22.45410 -21.81444 -19.97603 -18.84823 -18.34515 -18.21433 -18.17298 -17.40791 -17.13153 -16.91094 -16.49486 -16.32608 -16.09013 -15.59325 -15.33749 -15.20137 -14.93570 -14.87313 -14.33774 -14.18914 -14.13442 -13.84705 -13.57475 -13.39916 -13.34832 -12.88848 -12.83182 -12.67143 -12.50847 -12.38820 -12.23879 -12.18179 -11.77845 -11.68208 -11.53092 -11.20731 -10.98178 -10.48921 -9.91443 -9.65233 -9.44066 -8.13099 -6.23232 1.41056 1.42246 1.44166 1.54897 1.86966 2.44833 2.62250 3.05697 3.20233 3.38219 3.47146 3.61191 3.65860 3.81550 3.92569 4.03425 4.05994 4.13682 4.18513 4.27834 4.32190 4.46042 4.58002 4.61326 4.68344 4.72595 4.77309 4.79548 4.90613 4.97993 5.22513 5.38332 5.57643 5.77020 5.82061 5.84119 5.98636 6.05647 6.27982 6.30822 6.47890 6.95035 6.99467 7.44959 8.98238 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.003606 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.530864 B = 7763.554165 C = 9026.050931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.079 4.079 11 C 0.086 3.914 12 H 0.110 0.890 13 N -0.818 5.818 14 C 0.488 3.512 15 O -0.584 6.584 16 N -0.607 5.607 17 C 0.103 3.897 18 C 0.044 3.956 19 N -0.539 5.539 20 C -0.003 4.003 21 C 0.264 3.736 22 F -0.220 7.220 23 F -0.213 7.213 24 C 0.036 3.964 25 C 0.115 3.885 26 H 0.262 0.738 27 H -0.002 1.002 28 H 0.004 0.996 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.346 0.654 32 H 0.345 0.655 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.030 0.970 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 -14.905 -13.266 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.209 1.209 7 C -0.579 4.579 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.117 4.117 11 C -0.030 4.030 12 H 0.128 0.872 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.465 6.465 16 N -0.340 5.340 17 C -0.019 4.019 18 C -0.084 4.084 19 N -0.264 5.264 20 C -0.131 4.131 21 C 0.210 3.790 22 F -0.202 7.202 23 F -0.195 7.195 24 C -0.093 4.093 25 C -0.008 4.008 26 H 0.071 0.929 27 H 0.016 0.984 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.048 0.952 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.905 -14.809 -13.192 23.132 hybrid contribution 1.090 0.459 0.925 1.501 sum 12.995 -14.350 -12.267 22.919 Atomic orbital electron populations 1.70104 1.07593 1.27438 1.51740 1.25860 0.95643 1.02880 0.94993 0.85516 0.79059 0.79441 0.77703 1.18867 1.20159 1.20897 1.21707 0.93233 0.92627 1.50318 0.92764 1.18813 0.93749 0.91129 0.95889 1.21393 0.97721 0.92043 1.00528 1.21661 0.93704 0.92150 0.95456 0.87225 1.59001 1.27152 1.45257 1.03243 1.22472 0.82086 0.85421 0.82529 1.90616 1.62375 1.55604 1.37921 1.48355 1.44568 1.33674 1.07418 1.22124 0.97299 0.97381 0.85122 1.22540 0.93509 0.90710 1.01637 1.61914 1.19770 1.29378 1.15357 1.23413 0.94179 0.96404 0.99128 1.22477 0.86576 0.84343 0.85568 1.92866 1.86794 1.75431 1.65108 1.92967 1.62079 1.83157 1.81247 1.22751 0.96521 1.00410 0.89580 1.21684 0.89468 0.89101 1.00513 0.92927 0.98388 0.97741 0.94316 0.91521 0.84051 0.84194 0.88939 0.88637 0.94708 0.86638 0.85430 0.90542 0.82799 0.95212 0.87309 0.90300 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.04 2.11 4.86 29.85 0.15 2.25 16 10 C -0.08 -3.14 4.45 30.60 0.14 -3.00 16 11 C 0.09 2.91 2.29 44.17 0.10 3.01 16 12 H 0.11 3.45 6.86 -2.39 -0.02 3.43 16 13 N -0.82 -28.34 8.44 -171.79 -1.45 -29.79 16 14 C 0.49 15.86 6.95 87.66 0.61 16.47 16 15 O -0.58 -22.30 15.70 -3.03 -0.05 -22.35 16 16 N -0.61 -16.09 3.01 -818.01 -2.46 -18.55 16 17 C 0.10 2.24 5.97 86.35 0.52 2.76 16 18 C 0.04 0.82 5.58 86.38 0.48 1.30 16 19 N -0.54 -9.55 4.38 -895.33 -3.92 -13.47 16 20 C 0.00 -0.03 5.39 86.30 0.46 0.43 16 21 C 0.26 2.96 5.58 71.98 0.40 3.37 16 22 F -0.22 -3.58 14.67 44.97 0.66 -2.92 16 23 F -0.21 -3.72 17.15 44.97 0.77 -2.95 16 24 C 0.04 0.73 5.40 86.37 0.47 1.20 16 25 C 0.12 2.75 6.59 86.34 0.57 3.32 16 26 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.45 6.94 -2.39 -0.02 2.43 16 31 H 0.35 10.39 9.06 -89.70 -0.81 9.58 16 32 H 0.34 12.26 8.58 -89.69 -0.77 11.49 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 2.28 4.86 -2.38 -0.01 2.26 16 35 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.12 1.63 7.89 -2.38 -0.02 1.62 16 37 H 0.13 0.94 7.75 -2.39 -0.02 0.92 16 38 H 0.08 0.81 7.99 -2.38 -0.02 0.79 16 39 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 2.09 5.42 -2.39 -0.01 2.07 16 42 H 0.08 2.13 7.06 -2.39 -0.02 2.11 16 43 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -71.37 348.33 -0.09 -71.46 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.54 Total: 26.37 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 4.59 Total: 1.98 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -7.54 Total: -117.19 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 1.43 Total: -5.87 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.37 -0.09 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.185 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds