Wall clock time and date at job start Fri Apr 10 2020 17:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00081 * 2 1 4 4 H 1.48502 * 109.46986 * 269.99476 * 3 2 1 5 5 H 1.48496 * 109.47489 * 29.99813 * 3 2 1 6 6 H 1.48503 * 109.46704 * 149.99738 * 3 2 1 7 7 C 1.37877 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99902 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00432 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47096 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46805 * 305.00185 * 11 10 9 13 13 N 1.46898 * 109.47075 * 65.00133 * 11 10 9 14 14 C 1.50698 * 109.47319 * 184.99993 * 11 10 9 15 15 O 1.21278 * 120.00351 * 260.00289 * 14 11 10 16 16 N 1.34776 * 119.99863 * 79.99962 * 14 11 10 17 17 C 1.47078 * 120.88189 * 359.72276 * 16 14 11 18 18 C 1.53699 * 108.27699 * 128.75304 * 17 16 14 19 19 N 1.46896 * 109.25379 * 54.08444 * 18 17 16 20 20 C 1.46901 * 110.99813 * 172.60630 * 19 18 17 21 21 C 1.53004 * 109.47231 * 201.02043 * 20 19 18 22 22 F 1.39907 * 109.47125 * 294.14054 * 21 20 19 23 23 F 1.39895 * 109.46891 * 54.13779 * 21 20 19 24 24 C 1.46903 * 111.27006 * 296.75555 * 19 18 17 25 25 C 1.47081 * 120.88134 * 179.97438 * 16 14 11 26 26 H 0.96998 * 119.99327 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46633 * 299.99985 * 9 7 2 28 28 H 1.09005 * 109.46548 * 59.99868 * 9 7 2 29 29 H 1.09000 * 109.47252 * 300.00360 * 10 9 7 30 30 H 1.08999 * 109.47181 * 59.99897 * 10 9 7 31 31 H 1.00901 * 111.00129 * 296.04699 * 13 11 10 32 32 H 1.00906 * 111.00154 * 59.99506 * 13 11 10 33 33 H 1.08997 * 109.62938 * 248.52305 * 17 16 14 34 34 H 1.09006 * 109.62993 * 9.10413 * 17 16 14 35 35 H 1.09002 * 109.64978 * 294.08174 * 18 17 16 36 36 H 1.09003 * 109.41759 * 173.94665 * 18 17 16 37 37 H 1.08998 * 109.47351 * 321.02444 * 20 19 18 38 38 H 1.09004 * 109.47214 * 81.02189 * 20 19 18 39 39 H 1.08997 * 109.47073 * 174.14014 * 21 20 19 40 40 H 1.08999 * 109.49041 * 303.14711 * 24 19 18 41 41 H 1.09002 * 109.49283 * 183.06879 * 24 19 18 42 42 H 1.08996 * 109.62810 * 350.90102 * 25 16 14 43 43 H 1.09010 * 109.62573 * 111.47903 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2537 14 6 2.4546 -6.1299 0.1250 15 8 2.7861 -6.7538 -0.8608 16 7 2.9579 -6.4586 1.3313 17 6 2.5740 -5.7114 2.5385 18 6 2.1197 -6.7201 3.6056 19 7 3.1751 -7.7221 3.8055 20 6 2.8580 -8.6017 4.9385 21 6 4.1422 -9.2581 5.4495 22 9 4.6501 -10.1158 4.4678 23 9 5.0881 -8.2689 5.7391 24 6 3.4080 -8.5020 2.5825 25 6 3.9098 -7.5707 1.4746 26 1 -0.4849 0.8401 -0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 2.8718 -3.6044 -0.8894 30 1 2.8718 -3.6045 0.8905 31 1 0.0231 -4.4009 -1.3300 32 1 1.3475 -5.1034 -2.0500 33 1 3.4296 -5.1452 2.9063 34 1 1.7550 -5.0315 2.3034 35 1 1.2059 -7.2149 3.2768 36 1 1.9331 -6.1963 4.5432 37 1 2.4065 -8.0153 5.7386 38 1 2.1595 -9.3734 4.6150 39 1 3.9243 -9.8281 6.3526 40 1 2.4762 -8.9720 2.2680 41 1 4.1556 -9.2707 2.7782 42 1 3.9746 -8.1204 0.5356 43 1 4.8918 -7.1799 1.7418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424159375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:36 Heat of formation + Delta-G solvation = -134.074713 kcal Electronic energy + Delta-G solvation = -25975.781354 eV Core-core repulsion = 21919.337080 eV Total energy + Delta-G solvation = -4056.444274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.18453 -47.17131 -40.23452 -38.23186 -35.55049 -34.83630 -32.87610 -31.35176 -30.45661 -29.88854 -27.14447 -26.00070 -24.25949 -23.41981 -22.66904 -21.31207 -20.20997 -18.87250 -17.95585 -17.59910 -17.35868 -16.73356 -16.29456 -15.88616 -15.32619 -15.26897 -14.96756 -14.61455 -14.37306 -14.32962 -14.18630 -13.99900 -13.53476 -13.44904 -13.17984 -12.83865 -12.78387 -12.54443 -12.17128 -12.09697 -11.88865 -11.69275 -11.42187 -11.30185 -11.09273 -10.93507 -10.85758 -10.67464 -9.99569 -9.87467 -9.27679 -9.18114 -8.93117 -8.48621 -8.44665 -8.19097 -6.09496 -4.12463 2.90581 2.98020 3.27133 3.32479 3.33890 3.37249 3.57639 3.91877 4.13011 4.38866 4.49837 4.61158 4.73582 4.85701 4.91972 5.03136 5.09176 5.14496 5.20982 5.25440 5.26926 5.43877 5.45908 5.58962 5.71042 5.74070 5.79406 5.94788 6.27681 6.43787 6.48615 6.57318 6.63703 6.85934 7.38878 7.50233 7.58304 7.63972 7.87540 7.89784 8.30248 8.42836 8.93448 9.52617 11.01384 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.003138 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.222890 B = 8921.969884 C = 9768.634143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.540 6.540 16 N -0.618 5.618 17 C 0.110 3.890 18 C 0.042 3.958 19 N -0.532 5.532 20 C 0.001 3.999 21 C 0.270 3.730 22 F -0.206 7.206 23 F -0.194 7.194 24 C 0.028 3.972 25 C 0.119 3.881 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.354 0.646 32 H 0.346 0.654 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -18.831 12.673 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.040 4.040 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.415 6.415 16 N -0.353 5.353 17 C -0.014 4.014 18 C -0.087 4.087 19 N -0.257 5.257 20 C -0.128 4.128 21 C 0.216 3.784 22 F -0.187 7.187 23 F -0.176 7.176 24 C -0.100 4.100 25 C -0.004 4.004 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.477 -19.503 12.489 23.588 hybrid contribution 0.173 1.553 -0.271 1.585 sum 4.650 -17.950 12.218 22.206 Atomic orbital electron populations 1.69951 1.06016 1.26776 1.50494 1.25008 0.94868 0.99302 0.95110 0.86582 0.79866 0.83330 0.78187 1.20635 1.21155 1.19836 1.21182 0.93046 0.90861 1.51064 0.92697 1.19095 0.93666 0.91109 0.97298 1.22404 0.99920 0.93832 1.01672 1.21502 0.94678 0.92479 0.95384 0.88655 1.58761 1.18488 1.55840 1.03242 1.20905 0.80944 0.84446 0.82008 1.90618 1.60640 1.53639 1.36649 1.48145 1.45927 1.33748 1.07491 1.22026 1.01971 0.93545 0.83808 1.22655 0.92130 0.93783 1.00084 1.61878 1.44079 1.15273 1.04493 1.23241 0.95118 0.97945 0.96538 1.21971 0.85378 0.81348 0.89724 1.92900 1.89158 1.71281 1.65382 1.93013 1.67385 1.63453 1.93702 1.22884 1.01499 0.96269 0.89372 1.21583 0.92353 0.87875 0.98627 0.92893 0.96376 0.96438 0.92651 0.92384 0.83086 0.84114 0.90082 0.88172 0.93856 0.89095 0.87651 0.91434 0.87140 0.94160 0.87993 0.88683 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 10 C -0.14 -2.72 4.57 -26.73 -0.12 -2.85 16 11 C 0.07 1.28 2.36 -68.87 -0.16 1.12 16 12 H 0.10 1.54 6.53 -51.93 -0.34 1.20 16 13 N -0.83 -14.53 8.94 -5.66 -0.05 -14.58 16 14 C 0.53 9.12 6.96 -10.99 -0.08 9.04 16 15 O -0.54 -10.87 15.70 5.56 0.09 -10.78 16 16 N -0.62 -8.75 3.00 -172.21 -0.52 -9.26 16 17 C 0.11 1.31 5.75 -3.36 -0.02 1.29 16 18 C 0.04 0.40 5.60 -3.46 -0.02 0.38 16 19 N -0.53 -5.09 4.37 -234.05 -1.02 -6.12 16 20 C 0.00 0.01 5.39 -3.82 -0.02 -0.01 16 21 C 0.27 1.81 5.59 37.16 0.21 2.01 16 22 F -0.21 -1.82 14.67 2.25 0.03 -1.78 16 23 F -0.19 -1.92 17.15 2.25 0.04 -1.88 16 24 C 0.03 0.29 5.40 -3.72 -0.02 0.27 16 25 C 0.12 1.50 6.59 -3.63 -0.02 1.48 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.10 7.23 -51.93 -0.38 0.73 16 31 H 0.35 6.14 7.55 -39.29 -0.30 5.84 16 32 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.23 5.32 -51.93 -0.28 0.95 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.70 7.89 -51.93 -0.41 0.29 16 37 H 0.11 0.50 7.75 -51.93 -0.40 0.10 16 38 H 0.07 0.38 7.99 -51.93 -0.41 -0.04 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 1.02 5.42 -51.93 -0.28 0.74 16 42 H 0.09 1.30 7.06 -51.93 -0.37 0.94 16 43 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 346.72 15.07 5.22 5.22 Total: -1.00 -32.52 346.72 -7.65 -40.17 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.36 Total: 7.74 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.80 Total: 0.17 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.86 Total: -55.04 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.52 -7.65 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.904 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds