Wall clock time and date at job start Fri Apr 10 2020 17:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48501 * 109.47212 * 270.00182 * 3 2 1 5 5 H 1.48492 * 109.47310 * 30.00190 * 3 2 1 6 6 H 1.48502 * 109.47060 * 150.00490 * 3 2 1 7 7 C 1.38958 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00087 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99783 * 180.02562 * 9 7 2 11 11 O 1.21300 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00041 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.47044 * 180.02562 * 12 10 9 14 14 S 1.65601 * 119.99697 * 165.00431 * 13 12 10 15 15 O 1.42101 * 104.27743 * 308.92320 * 14 13 12 16 16 O 1.42106 * 104.27527 * 181.07138 * 14 13 12 17 17 C 1.81393 * 104.45208 * 64.99813 * 14 13 12 18 18 C 1.53009 * 109.47107 * 179.97438 * 17 14 13 19 19 O 1.42899 * 109.47113 * 179.97438 * 18 17 14 20 20 C 1.42903 * 113.99629 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49371 * 243.61887 * 21 20 19 23 23 C 1.53001 * 117.49608 * 174.99962 * 21 20 19 24 24 H 0.96998 * 119.99732 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00637 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47429 * 60.00410 * 12 10 9 27 27 H 1.09001 * 109.47523 * 299.99906 * 12 10 9 28 28 H 0.96992 * 119.99862 * 344.99480 * 13 12 10 29 29 H 1.08997 * 109.47613 * 60.00279 * 17 14 13 30 30 H 1.08998 * 109.47064 * 299.99290 * 17 14 13 31 31 H 1.09007 * 109.46516 * 59.99805 * 18 17 14 32 32 H 1.09004 * 109.47113 * 300.00274 * 18 17 14 33 33 H 1.09002 * 109.47382 * 59.99956 * 20 19 18 34 34 H 1.09001 * 109.46938 * 299.99942 * 20 19 18 35 35 H 1.08995 * 115.55630 * 29.32572 * 21 20 19 36 36 H 1.08998 * 117.50656 * 0.02562 * 22 21 20 37 37 H 1.09001 * 117.49674 * 145.02590 * 22 21 20 38 38 H 1.09003 * 117.49710 * 214.97494 * 23 21 20 39 39 H 1.08998 * 117.50185 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 16 1.6805 -7.5060 0.3703 15 8 0.9767 -7.3515 1.5951 16 8 2.8570 -8.2996 0.2965 17 6 0.5373 -7.9361 -0.9708 18 6 -0.0128 -9.3451 -0.7399 19 8 -0.9138 -9.6836 -1.7961 20 6 -1.4875 -10.9868 -1.6752 21 6 -2.4296 -11.2406 -2.8538 22 6 -3.9141 -11.4397 -2.5414 23 6 -3.0560 -12.6316 -2.9706 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6174 -4.9205 -0.8914 27 1 0.6167 -4.9209 0.8886 28 1 3.1277 -5.8179 -0.2171 29 1 1.0663 -7.9047 -1.9233 30 1 -0.2864 -7.2226 -0.9889 31 1 -0.5417 -9.3769 0.2127 32 1 0.8112 -10.0584 -0.7220 33 1 -2.0468 -11.0525 -0.7419 34 1 -0.6944 -11.7346 -1.6769 35 1 -2.1746 -10.7242 -3.7792 36 1 -4.2197 -11.3895 -1.4963 37 1 -4.6360 -11.0542 -3.2613 38 1 -3.2135 -13.0301 -3.9729 39 1 -2.7968 -13.3660 -2.2080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425226608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:39 Heat of formation + Delta-G solvation = -132.657591 kcal Electronic energy + Delta-G solvation = -22313.753957 eV Core-core repulsion = 18577.659763 eV Total energy + Delta-G solvation = -3736.094193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.89137 -38.45969 -37.12361 -37.03777 -35.98956 -34.69803 -33.74004 -32.13661 -31.37043 -27.33302 -27.19048 -24.35920 -23.73520 -22.80196 -21.09659 -19.69044 -19.29890 -18.19363 -18.00485 -17.26314 -16.81760 -16.17566 -16.02669 -15.89081 -15.50844 -14.88927 -14.78718 -14.61621 -14.31651 -13.96453 -13.84116 -13.64194 -12.56961 -12.35456 -12.28186 -12.15745 -12.11756 -11.99999 -11.94596 -11.93072 -11.58639 -11.54580 -11.14557 -11.08694 -10.80683 -10.67091 -10.45870 -10.31305 -9.92350 -9.64521 -9.40518 -8.62220 -8.10533 -6.52279 -3.93911 0.13550 2.65942 3.05986 3.11649 3.22322 3.28116 3.42659 3.71122 3.79293 4.07676 4.12458 4.23012 4.42779 4.44928 4.53565 4.68468 4.79575 4.80327 4.87228 5.02691 5.12957 5.14600 5.20439 5.23959 5.37730 5.42215 5.46514 5.67330 5.71659 5.76314 5.80153 6.24526 6.74339 7.22524 7.46033 7.92823 8.45313 9.04905 9.38511 9.87159 10.64729 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019963 B = 0.002530 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.236314 B =11062.354934 C =12119.114367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.434 3.566 11 O -0.589 6.589 12 C 0.101 3.899 13 N -1.096 6.096 14 S 2.626 3.374 15 O -0.951 6.951 16 O -0.956 6.956 17 C -0.641 4.641 18 C 0.077 3.923 19 O -0.375 6.375 20 C 0.088 3.912 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.174 4.174 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.428 0.572 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 -21.042 -4.662 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.188 5.188 10 C 0.218 3.782 11 O -0.474 6.474 12 C -0.029 4.029 13 N -0.860 5.860 14 S 2.715 3.285 15 O -0.941 6.941 16 O -0.946 6.946 17 C -0.768 4.768 18 C -0.001 4.001 19 O -0.294 6.294 20 C 0.011 3.989 21 C -0.173 4.173 22 C -0.214 4.214 23 C -0.211 4.211 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.267 0.733 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.874 -21.267 -4.030 22.711 hybrid contribution -0.248 1.028 -0.655 1.244 sum -7.122 -20.240 -4.685 21.962 Atomic orbital electron populations 1.69607 1.05989 1.28498 1.49574 1.25316 0.95682 0.99919 0.96846 0.85807 0.79259 0.80485 0.78456 1.20302 1.20821 1.19319 1.19737 0.93491 0.82004 1.48109 0.87670 1.41817 1.09403 1.04509 1.63056 1.19589 0.88350 0.84663 0.85556 1.90516 1.13668 1.86568 1.56677 1.21008 0.91516 0.87583 1.02812 1.55123 1.20146 1.22400 1.88359 1.04522 0.75059 0.73174 0.75786 1.93616 1.76153 1.85028 1.39292 1.93609 1.44960 1.68710 1.87295 1.30905 1.18051 1.05265 1.22577 1.21993 0.93574 0.92989 0.91539 1.87937 1.61193 1.33360 1.46899 1.22096 0.95396 0.84562 0.96850 1.22134 0.94358 1.00474 1.00364 1.23094 0.93431 1.02220 1.02654 1.22987 1.03957 0.90963 1.03188 0.91622 0.77104 0.90148 0.88561 0.73266 0.83897 0.83930 0.91581 0.91652 0.92721 0.92484 0.86694 0.88538 0.88471 0.88311 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.54 13.05 55.50 0.72 -22.81 16 2 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.34 5.29 -10.96 -0.06 -13.39 16 10 C 0.43 9.70 7.85 -10.99 -0.09 9.62 16 11 O -0.59 -15.17 15.30 5.54 0.08 -15.09 16 12 C 0.10 1.63 6.61 -5.19 -0.03 1.59 16 13 N -1.10 -16.39 5.82 -11.65 -0.07 -16.46 16 14 S 2.63 33.69 5.46 -107.50 -0.59 33.11 16 15 O -0.95 -14.92 17.50 -57.54 -1.01 -15.92 16 16 O -0.96 -14.64 18.08 -57.54 -1.04 -15.68 16 17 C -0.64 -6.15 6.44 37.16 0.24 -5.91 16 18 C 0.08 0.74 5.95 37.16 0.22 0.96 16 19 O -0.37 -3.97 10.34 -35.23 -0.36 -4.33 16 20 C 0.09 0.72 6.22 37.16 0.23 0.95 16 21 C -0.16 -1.18 6.06 -90.62 -0.55 -1.73 16 22 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 23 C -0.17 -1.01 10.25 -26.73 -0.27 -1.29 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.40 8.97 7.90 -40.82 -0.32 8.65 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.43 7.69 -51.93 -0.40 1.03 16 28 H 0.43 6.88 7.66 -34.47 -0.26 6.62 16 29 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.14 1.20 8.14 -51.92 -0.42 0.78 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.39 7.88 -51.93 -0.41 -0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -34.64 352.50 -8.34 -42.98 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.55 Total: 11.87 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.76 Total: -5.01 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.60 Total: -52.67 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -2.33 Total: -51.02 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 33.69 SS G_CDS: -0.59 Total: 33.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.64 -8.34 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425226608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.677 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds