Wall clock time and date at job start Fri Apr 10 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48501 * 109.47212 * 270.00182 * 3 2 1 5 5 H 1.48492 * 109.47310 * 30.00190 * 3 2 1 6 6 H 1.48502 * 109.47060 * 150.00490 * 3 2 1 7 7 C 1.38958 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00087 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99783 * 180.02562 * 9 7 2 11 11 O 1.21300 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00041 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.47044 * 180.02562 * 12 10 9 14 14 S 1.65601 * 119.99697 * 165.00431 * 13 12 10 15 15 O 1.42101 * 104.27743 * 308.92320 * 14 13 12 16 16 O 1.42106 * 104.27527 * 181.07138 * 14 13 12 17 17 C 1.81393 * 104.45208 * 64.99813 * 14 13 12 18 18 C 1.53009 * 109.47107 * 179.97438 * 17 14 13 19 19 O 1.42899 * 109.47113 * 179.97438 * 18 17 14 20 20 C 1.42903 * 113.99629 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49371 * 243.61887 * 21 20 19 23 23 C 1.53001 * 117.49608 * 174.99962 * 21 20 19 24 24 H 0.96998 * 119.99732 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00637 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47429 * 60.00410 * 12 10 9 27 27 H 1.09001 * 109.47523 * 299.99906 * 12 10 9 28 28 H 0.96992 * 119.99862 * 344.99480 * 13 12 10 29 29 H 1.08997 * 109.47613 * 60.00279 * 17 14 13 30 30 H 1.08998 * 109.47064 * 299.99290 * 17 14 13 31 31 H 1.09007 * 109.46516 * 59.99805 * 18 17 14 32 32 H 1.09004 * 109.47113 * 300.00274 * 18 17 14 33 33 H 1.09002 * 109.47382 * 59.99956 * 20 19 18 34 34 H 1.09001 * 109.46938 * 299.99942 * 20 19 18 35 35 H 1.08995 * 115.55630 * 29.32572 * 21 20 19 36 36 H 1.08998 * 117.50656 * 0.02562 * 22 21 20 37 37 H 1.09001 * 117.49674 * 145.02590 * 22 21 20 38 38 H 1.09003 * 117.49710 * 214.97494 * 23 21 20 39 39 H 1.08998 * 117.50185 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 16 1.6805 -7.5060 0.3703 15 8 0.9767 -7.3515 1.5951 16 8 2.8570 -8.2996 0.2965 17 6 0.5373 -7.9361 -0.9708 18 6 -0.0128 -9.3451 -0.7399 19 8 -0.9138 -9.6836 -1.7961 20 6 -1.4875 -10.9868 -1.6752 21 6 -2.4296 -11.2406 -2.8538 22 6 -3.9141 -11.4397 -2.5414 23 6 -3.0560 -12.6316 -2.9706 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6174 -4.9205 -0.8914 27 1 0.6167 -4.9209 0.8886 28 1 3.1277 -5.8179 -0.2171 29 1 1.0663 -7.9047 -1.9233 30 1 -0.2864 -7.2226 -0.9889 31 1 -0.5417 -9.3769 0.2127 32 1 0.8112 -10.0584 -0.7220 33 1 -2.0468 -11.0525 -0.7419 34 1 -0.6944 -11.7346 -1.6769 35 1 -2.1746 -10.7242 -3.7792 36 1 -4.2197 -11.3895 -1.4963 37 1 -4.6360 -11.0542 -3.2613 38 1 -3.2135 -13.0301 -3.9729 39 1 -2.7968 -13.3660 -2.2080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425226608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:38 Heat of formation + Delta-G solvation = -160.805116 kcal Electronic energy + Delta-G solvation = -22314.974525 eV Core-core repulsion = 18577.659763 eV Total energy + Delta-G solvation = -3737.314761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.24342 -39.52135 -38.26648 -37.60670 -37.12639 -36.31651 -35.36840 -33.31764 -32.89283 -28.74109 -27.93723 -26.14921 -24.49328 -23.25304 -21.65221 -21.40132 -20.37030 -20.05326 -19.11500 -18.24447 -17.66142 -17.26836 -17.11731 -17.03227 -16.52381 -16.40090 -16.04767 -15.95079 -15.37676 -15.33896 -14.66118 -14.47095 -14.16036 -13.85940 -13.58851 -13.30828 -13.19022 -13.11614 -12.91702 -12.91586 -12.81629 -12.42974 -12.38618 -12.26504 -12.12281 -11.92733 -11.54535 -11.34355 -11.23963 -10.66251 -10.53278 -10.39567 -10.05222 -8.48854 -5.97824 -0.88866 1.37755 1.43584 1.54769 1.60810 1.96973 2.29014 2.37115 2.78538 2.97906 3.08168 3.18784 3.24063 3.48988 3.75893 3.90553 3.96086 4.00648 4.12698 4.17166 4.31926 4.41192 4.44596 4.46960 4.48897 4.67449 4.70466 4.77972 4.80061 5.01508 5.21827 5.23930 5.40836 5.89936 6.01654 6.08382 6.54156 7.08440 7.49704 8.02855 8.67927 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019963 B = 0.002530 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.236314 B =11062.354934 C =12119.114367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.563 5.563 10 C 0.432 3.568 11 O -0.628 6.628 12 C 0.107 3.893 13 N -1.105 6.105 14 S 2.642 3.358 15 O -0.983 6.983 16 O -0.984 6.984 17 C -0.618 4.618 18 C 0.063 3.937 19 O -0.392 6.392 20 C 0.081 3.919 21 C -0.172 4.172 22 C -0.181 4.181 23 C -0.163 4.163 24 H 0.279 0.721 25 H 0.401 0.599 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.423 0.577 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 -21.875 -5.343 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.099 0.901 9 N -0.200 5.200 10 C 0.218 3.782 11 O -0.515 6.515 12 C -0.022 4.022 13 N -0.867 5.867 14 S 2.736 3.264 15 O -0.973 6.973 16 O -0.974 6.974 17 C -0.749 4.749 18 C -0.015 4.015 19 O -0.312 6.312 20 C 0.005 3.995 21 C -0.190 4.190 22 C -0.218 4.218 23 C -0.200 4.200 24 H 0.089 0.911 25 H 0.236 0.764 26 H 0.144 0.856 27 H 0.130 0.870 28 H 0.260 0.740 29 H 0.179 0.821 30 H 0.180 0.820 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.155 -22.103 -4.681 24.020 hybrid contribution 0.116 1.166 -0.478 1.265 sum -8.039 -20.938 -5.158 23.013 Atomic orbital electron populations 1.69657 1.06756 1.29507 1.49562 1.26043 0.96559 1.02426 0.96014 0.84924 0.77849 0.76869 0.78681 1.19513 1.19633 1.19916 1.19685 0.92840 0.83849 1.50259 0.90072 1.41865 1.09636 1.04542 1.63925 1.20661 0.88264 0.86201 0.83053 1.90491 1.15790 1.87578 1.57673 1.21077 0.91243 0.84130 1.05800 1.55182 1.19873 1.22854 1.88817 1.03913 0.74693 0.71991 0.75847 1.93573 1.76441 1.85163 1.42089 1.93570 1.47030 1.68889 1.87917 1.30616 1.17392 1.06127 1.20790 1.22192 0.94288 0.93001 0.92035 1.87896 1.61438 1.34611 1.47222 1.22281 0.95894 0.83862 0.97497 1.22150 0.94982 1.02000 0.99918 1.23177 0.92917 1.02671 1.03026 1.23080 1.02489 0.90429 1.03968 0.91121 0.76405 0.85589 0.86970 0.74013 0.82132 0.81963 0.90468 0.90521 0.91819 0.91482 0.87700 0.88176 0.88219 0.87497 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.54 13.05 21.67 0.28 -47.26 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 3 Si 0.99 41.74 29.55 68.60 2.03 43.77 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.34 -18.43 9.68 84.04 0.81 -17.61 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.56 -27.33 5.29 -306.97 -1.62 -28.95 16 10 C 0.43 19.27 7.85 87.66 0.69 19.95 16 11 O -0.63 -32.96 15.30 -3.09 -0.05 -33.00 16 12 C 0.11 3.25 6.61 85.63 0.57 3.82 16 13 N -1.11 -31.78 5.82 -190.78 -1.11 -32.89 16 14 S 2.64 63.98 5.46 -56.49 -0.31 63.67 16 15 O -0.98 -29.67 17.50 -127.65 -2.23 -31.90 16 16 O -0.98 -29.45 18.08 -127.65 -2.31 -31.76 16 17 C -0.62 -10.03 6.44 71.99 0.46 -9.57 16 18 C 0.06 1.05 5.95 71.99 0.43 1.48 16 19 O -0.39 -7.42 10.34 -148.98 -1.54 -8.96 16 20 C 0.08 1.17 6.22 71.98 0.45 1.62 16 21 C -0.17 -2.36 6.06 -10.79 -0.07 -2.43 16 22 C -0.18 -2.07 10.18 30.60 0.31 -1.76 16 23 C -0.16 -1.58 10.25 30.60 0.31 -1.27 16 24 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 25 H 0.40 18.11 7.90 -92.71 -0.73 17.38 16 26 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.11 3.09 7.69 -2.39 -0.02 3.07 16 28 H 0.42 13.51 7.66 -96.75 -0.74 12.77 16 29 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 0.78 7.88 -2.39 -0.02 0.76 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 1.05 8.03 -2.39 -0.02 1.03 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.99 352.50 -2.82 -77.81 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.39 Total: 35.28 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 4.43 Total: -5.81 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -2.45 Total: -109.10 kcal Atomic # 8 Polarization: -99.49 SS G_CDS: -6.13 Total: -105.62 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 63.98 SS G_CDS: -0.31 Total: 63.67 kcal Total: -74.99 -2.82 -77.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425226608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.991 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds