Wall clock time and date at job start Fri Apr 10 2020 17:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00168 * 2 1 4 4 C 1.52993 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.53034 * 109.46271 * 175.00181 * 4 3 2 6 6 C 1.53192 * 109.31802 * 181.37580 * 5 4 3 7 7 N 1.46933 * 108.77332 * 305.36774 * 6 5 4 8 8 S 1.65595 * 120.62849 * 233.58481 * 7 6 5 9 9 O 1.42105 * 106.40149 * 203.53935 * 8 7 6 10 10 O 1.42098 * 106.40317 * 336.45808 * 8 7 6 11 11 N 1.65606 * 107.22013 * 90.00117 * 8 7 6 12 12 C 1.46489 * 120.00129 * 89.99663 * 11 8 7 13 13 C 1.46504 * 119.99819 * 269.99910 * 11 8 7 14 14 C 1.50693 * 109.47172 * 94.99586 * 13 11 8 15 15 H 1.08000 * 119.99929 * 0.02562 * 14 13 11 16 16 C 1.37874 * 120.00099 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99920 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00030 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46919 * 120.00298 * 18 16 14 21 21 H 1.48500 * 109.46804 * 239.99842 * 18 16 14 22 22 C 1.46925 * 118.73831 * 53.85449 * 7 6 5 23 23 C 1.53036 * 109.45237 * 295.06736 * 4 3 2 24 24 H 1.08996 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47173 * 299.99972 * 1 2 3 26 26 H 1.09004 * 109.46658 * 59.99608 * 1 2 3 27 27 H 1.00903 * 110.99580 * 236.04969 * 2 1 3 28 28 H 1.09001 * 109.46476 * 60.00215 * 3 2 1 29 29 H 1.08999 * 109.47435 * 300.00712 * 3 2 1 30 30 H 1.09003 * 109.45945 * 55.03412 * 4 3 2 31 31 H 1.09000 * 109.49815 * 61.42437 * 5 4 3 32 32 H 1.09001 * 109.49818 * 301.32784 * 5 4 3 33 33 H 1.08994 * 109.59097 * 185.58192 * 6 5 4 34 34 H 1.08995 * 109.70267 * 65.21951 * 6 5 4 35 35 H 1.08998 * 109.47302 * 90.00098 * 12 11 8 36 36 H 1.09005 * 109.47350 * 210.00090 * 12 11 8 37 37 H 1.08996 * 109.47412 * 330.00152 * 12 11 8 38 38 H 1.08996 * 109.47155 * 215.00149 * 13 11 8 39 39 H 1.09007 * 109.47086 * 334.99657 * 13 11 8 40 40 H 0.97001 * 120.00062 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.58173 * 65.93172 * 22 7 6 42 42 H 1.08999 * 109.58418 * 186.35104 * 22 7 6 43 43 H 1.08999 * 109.49828 * 298.56911 * 23 4 3 44 44 H 1.09007 * 109.50076 * 58.66727 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 6 4.0730 2.7539 -0.1251 6 6 5.6039 2.7063 -0.1587 7 7 6.0804 1.9784 1.0254 8 16 7.1971 2.6591 2.0413 9 8 7.8416 1.5825 2.7083 10 8 7.8974 3.6296 1.2753 11 7 6.3601 3.4938 3.2012 12 6 5.9616 2.8240 4.4415 13 6 6.0182 4.9022 2.9868 14 6 4.6246 5.0005 2.4220 15 1 4.0507 4.1036 2.2412 16 6 4.0817 6.2354 2.1370 17 7 4.7803 7.3275 2.3576 18 14 2.3538 6.3572 1.4376 19 1 1.7847 4.9942 1.2843 20 1 1.5009 7.1485 2.3605 21 1 2.4023 7.0259 0.1125 22 6 5.5519 0.6329 1.2877 23 6 4.0175 0.7060 1.3080 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6460 1.8949 -0.8899 30 1 3.8725 0.7320 -0.8414 31 1 3.7462 3.3464 0.7294 32 1 3.7029 3.2064 -1.0450 33 1 6.0014 3.7211 -0.1482 34 1 5.9358 2.1930 -1.0611 35 1 6.7491 2.9395 5.1861 36 1 5.0399 3.2699 4.8153 37 1 5.7991 1.7640 4.2460 38 1 6.0641 5.4358 3.9361 39 1 6.7262 5.3454 2.2863 40 1 4.3983 8.1964 2.1574 41 1 5.8776 -0.0474 0.5007 42 1 5.9151 0.2793 2.2526 43 1 3.6912 1.3178 2.1491 44 1 3.6079 -0.2991 1.4082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440440501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:18 Heat of formation + Delta-G solvation = -80.398341 kcal Electronic energy + Delta-G solvation = -25607.678296 eV Core-core repulsion = 22107.401991 eV Total energy + Delta-G solvation = -3500.276305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.62790 -36.66228 -35.90707 -35.42867 -35.16631 -32.50039 -32.29721 -30.69685 -27.76416 -27.16254 -25.06370 -24.14353 -22.96412 -22.38990 -21.72700 -19.93704 -18.30477 -17.27930 -16.75384 -16.37902 -15.82836 -15.64926 -14.85820 -14.73346 -14.50410 -14.20396 -13.97979 -13.50217 -13.37266 -13.29718 -13.05031 -12.77242 -12.33429 -12.21646 -12.16585 -11.82398 -11.76356 -11.66171 -11.35240 -11.25663 -11.17911 -11.11931 -10.97709 -10.78162 -10.58958 -10.42131 -10.27725 -10.17228 -9.91580 -9.55292 -8.60969 -8.52651 -8.49129 -7.97334 -6.12632 -4.18404 1.31872 3.20054 3.28161 3.29701 3.52741 4.14686 4.20314 4.33203 4.87488 4.93837 4.98383 5.18132 5.21896 5.24607 5.32598 5.40902 5.53576 5.63397 5.66337 5.74121 5.76028 5.78699 5.82781 5.93922 6.07571 6.12226 6.17915 6.21412 6.31137 6.33737 6.52737 6.57136 6.69068 6.80717 6.91165 7.03821 7.26523 7.36912 7.47295 7.67250 7.86398 8.16330 8.87415 9.46732 10.95615 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.008087 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.936616 B = 3461.723451 C = 5266.683719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.060 3.940 4 C -0.077 4.077 5 C -0.142 4.142 6 C 0.135 3.865 7 N -1.003 6.003 8 S 2.786 3.214 9 O -1.001 7.001 10 O -0.979 6.979 11 N -0.997 5.997 12 C 0.108 3.892 13 C 0.243 3.757 14 C -0.535 4.535 15 H 0.070 0.930 16 C 0.065 3.935 17 N -0.889 5.889 18 Si 0.886 3.114 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.283 1.283 22 C 0.124 3.876 23 C -0.119 4.119 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.338 0.662 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -13.036 -4.119 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.069 4.069 4 C -0.096 4.096 5 C -0.181 4.181 6 C 0.010 3.990 7 N -0.842 5.842 8 S 2.795 3.205 9 O -0.985 6.985 10 O -0.963 6.963 11 N -0.839 5.839 12 C -0.039 4.039 13 C 0.121 3.879 14 C -0.575 4.575 15 H 0.088 0.912 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.714 3.286 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.002 4.002 23 C -0.158 4.158 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.154 0.846 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.059 -12.962 -3.500 14.026 hybrid contribution -1.835 0.624 -1.281 2.323 sum -5.894 -12.338 -4.780 14.485 Atomic orbital electron populations 1.22175 0.88185 1.01462 1.00384 1.60412 1.07373 1.14837 1.49608 1.22104 0.95195 0.88793 1.00799 1.21048 0.93313 0.97073 0.98210 1.22160 0.95679 0.96265 1.04013 1.21221 0.94273 0.97212 0.86338 1.58177 1.61844 1.25158 1.39012 1.01744 0.73682 0.72296 0.72756 1.93522 1.73586 1.56174 1.75215 1.93562 1.70840 1.61137 1.70765 1.57660 1.74098 1.23055 1.29069 1.21193 1.00574 0.95595 0.86523 1.19215 0.96300 0.74071 0.98297 1.21669 1.00143 0.92701 1.42947 0.91217 1.24931 0.97508 0.95721 0.95618 1.69941 1.37044 0.97870 1.47898 0.86648 0.84774 0.78301 0.78918 1.19419 1.21106 1.20889 1.21429 0.94295 0.83085 1.01374 1.21924 0.94442 1.01643 0.97772 0.91693 0.91724 0.96336 0.84552 0.90666 0.95411 0.91824 0.88384 0.91831 0.88575 0.92558 0.93905 0.90904 0.93014 0.94571 0.93211 0.92690 0.91976 0.89981 0.91302 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.07 0.64 0.91 16 2 N -0.69 -7.41 6.28 -121.13 -0.76 -8.17 16 3 C 0.06 0.75 5.07 -3.83 -0.02 0.73 16 4 C -0.08 -1.00 2.29 -90.59 -0.21 -1.20 16 5 C -0.14 -2.20 5.36 -26.61 -0.14 -2.34 16 6 C 0.14 2.21 6.38 -3.71 -0.02 2.19 16 7 N -1.00 -16.98 3.34 -113.27 -0.38 -17.36 16 8 S 2.79 56.34 6.07 -107.50 -0.65 55.69 16 9 O -1.00 -20.82 15.92 -57.17 -0.91 -21.73 16 10 O -0.98 -22.88 15.41 -57.17 -0.88 -23.77 16 11 N -1.00 -20.60 3.23 -123.06 -0.40 -21.00 16 12 C 0.11 1.87 10.31 59.84 0.62 2.48 16 13 C 0.24 5.94 5.41 -5.19 -0.03 5.91 16 14 C -0.54 -13.32 8.99 -34.44 -0.31 -13.63 16 15 H 0.07 1.65 5.51 -52.49 -0.29 1.36 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -24.88 13.29 55.43 0.74 -24.15 16 18 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.12 1.74 6.41 -3.49 -0.02 1.71 16 23 C -0.12 -1.56 5.28 -26.39 -0.14 -1.70 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.34 3.11 8.82 -39.29 -0.35 2.76 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.82 5.31 -51.93 -0.28 1.54 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.81 7.13 -51.93 -0.37 1.44 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 38 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.05 1.34 6.92 -51.92 -0.36 0.99 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.15 7.12 -51.93 -0.37 0.78 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -30.14 356.39 -10.06 -40.20 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.44 Total: 3.33 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 0.27 Total: -3.32 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -0.80 Total: -70.68 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.79 Total: -45.49 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 56.34 SS G_CDS: -0.65 Total: 55.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.14 -10.06 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440440501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.197 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds